PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000360835	[[43593288, 43600155], [43603539, 43603619], [43604077, 43604230], [43606048, 43606246], [43606927, 43607089], [43608430, 43608598], [43610095, 43610257], [43614260, 43614464], [43616455, 43616593], [43617178, 43617295], [43618643, 43618748], [43619102, 43619222], [43623379, 43623502], [43625077, 43625194], [43627758, 43627881], [43634843, 43634960], [43654224, 43654341], [43658725, 43658851], [43687051, 43687186], [43715942, 43716071], [43735109, 43735241], [43739179, 43739394]]	[[43600002, 43600155], [43603539, 43603619], [43604077, 43604230], [43606048, 43606246], [43606927, 43607089], [43608430, 43608598], [43610095, 43610257], [43614260, 43614464], [43616455, 43616593], [43617178, 43617295], [43618643, 43618748], [43619102, 43619222], [43623379, 43623502], [43625077, 43625194], [43627758, 43627881], [43634843, 43634960], [43654224, 43654341], [43658725, 43658851], [43687051, 43687186], [43715942, 43716071], [43735109, 43735241], [43739179, 43739267]]
ENST00000449304	[[43627761, 43627881], [43634843, 43634960], [43651493, 43651583], [43654224, 43654341], [43658725, 43658805]]	[[43627761, 43627881], [43634843, 43634960], [43651493, 43651583], [43654224, 43654341], [43658725, 43658805]]
ENST00000290460	[[43633581, 43634960], [43651493, 43651583], [43654224, 43654341], [43658725, 43658851], [43687051, 43687186], [43715942, 43716071], [43735109, 43735241], [43739179, 43739329]]	[[43634733, 43634960], [43651493, 43651583], [43654224, 43654341], [43658725, 43658851], [43687051, 43687186], [43715942, 43716071], [43735109, 43735241], [43739179, 43739267]]
ENST00000477991	[[43666137, 43666595], [43668514, 43668545]]	None
ENST00000470433	[[43666142, 43666595], [43668429, 43668520]]	None
ENST00000461595	[[43712842, 43713116], [43714228, 43714355], [43715942, 43716071]]	None
ENST00000480833	[[43712963, 43713116], [43715942, 43716071]]	None
NM_173050	[[43599228, 43600155], [43603539, 43603619], [43604077, 43604230], [43606048, 43606246], [43606927, 43607089], [43608430, 43608598], [43610095, 43610257], [43614260, 43614464], [43616455, 43616593], [43617178, 43617295], [43618643, 43618748], [43619102, 43619222], [43623379, 43623502], [43625077, 43625194], [43627758, 43627881], [43634843, 43634960], [43654224, 43654341], [43658725, 43658851], [43687051, 43687186], [43715942, 43716071], [43735109, 43735241], [43739179, 43739394]]	[[43600002, 43600155], [43603539, 43603619], [43604077, 43604230], [43606048, 43606246], [43606927, 43607089], [43608430, 43608598], [43610095, 43610257], [43614260, 43614464], [43616455, 43616593], [43617178, 43617295], [43618643, 43618748], [43619102, 43619222], [43623379, 43623502], [43625077, 43625194], [43627758, 43627881], [43634843, 43634960], [43654224, 43654341], [43658725, 43658851], [43687051, 43687186], [43715942, 43716071], [43735109, 43735241], [43739179, 43739267]]

Promoter

Chrom	Start	End	Description
chr22	43739340	43739385	CAGE_peak_1_at_SCUBE1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr22	GH22I043313	43313875	43313984	0.89	[{'connected_gene': 'RRP7BP', 'score': 12.41}, {'connected_gene': 'TTLL1', 'score': 12.25}, {'connected_gene': 'SCUBE1', 'score': 11.58}, {'connected_gene': 'LOC101927447', 'score': 11.55}, {'connected_gene': 'LOC100506679', 'score': 10.18}, {'connected_gene': 'ENSG00000261251', 'score': 9.86}, {'connected_gene': 'GC22M043296', 'score': 0.44}, {'connected_gene': 'GC22M043280', 'score': 0.29}]
chr22	GH22I043343	43343362	43343504	1.12	[{'connected_gene': 'SCUBE1', 'score': 550.77}, {'connected_gene': 'RPL5P34', 'score': 12.73}, {'connected_gene': 'RN7SKP80', 'score': 9.85}, {'connected_gene': 'POLDIP3', 'score': 9.79}, {'connected_gene': 'LOC105373053', 'score': 0.25}]
chr22	GH22I043376	43376814	43379034	1.06	[{'connected_gene': 'SCUBE1', 'score': 12.52}, {'connected_gene': 'LOC101927447', 'score': 12.37}, {'connected_gene': 'MPPED1', 'score': 11.77}, {'connected_gene': 'ENSG00000234892', 'score': 11.29}, {'connected_gene': 'MCAT', 'score': 5.02}, {'connected_gene': 'LOC105373053', 'score': 0.39}]
chr22	GH22I043370	43370135	43370304	0.2	[{'connected_gene': 'SCUBE1', 'score': 11.9}, {'connected_gene': 'LOC101927447', 'score': 11.66}, {'connected_gene': 'ENSG00000234892', 'score': 10.6}, {'connected_gene': 'LOC105373053', 'score': 0.34}]
chr22	GH22I043297	43297805	43298122	0.38	[{'connected_gene': 'SCUBE1', 'score': 19.25}, {'connected_gene': 'LOC101927447', 'score': 12.16}, {'connected_gene': 'GC22M043280', 'score': 0.39}, {'connected_gene': 'GC22M043296', 'score': 0.34}]
chr22	GH22I043296	43296971	43297419	0.2	[{'connected_gene': 'SCUBE1', 'score': 19.63}, {'connected_gene': 'LOC101927447', 'score': 12.16}, {'connected_gene': 'GC22M043280', 'score': 0.39}, {'connected_gene': 'GC22M043296', 'score': 0.34}]
chr22	GH22I043300	43300823	43302877	0.58	[{'connected_gene': 'SCUBE1', 'score': 18.09}, {'connected_gene': 'LOC101927447', 'score': 11.99}, {'connected_gene': 'GC22M043280', 'score': 0.37}, {'connected_gene': 'GC22M043296', 'score': 0.34}]
chr22	GH22I043292	43292112	43294877	1.3	[{'connected_gene': 'SCUBE1', 'score': 16.46}, {'connected_gene': 'GC22M043280', 'score': 0.44}, {'connected_gene': 'GC22M043296', 'score': 0.31}]
chr22	GH22I043257	43257055	43257990	0.85	[{'connected_gene': 'SCUBE1', 'score': 11.94}, {'connected_gene': 'GC22M043246', 'score': 0.44}, {'connected_gene': 'GC22M043260', 'score': 0.44}]
chr22	GH22I043288	43288635	43291004	1.13	[{'connected_gene': 'SCUBE1', 'score': 7.48}, {'connected_gene': 'GC22M043280', 'score': 0.44}, {'connected_gene': 'GC22M043296', 'score': 0.29}]
chr22	GH22I043415	43415210	43415605	0.22	[{'connected_gene': 'MPPED1', 'score': 13.7}, {'connected_gene': 'SCUBE1', 'score': 3.98}, {'connected_gene': 'TTLL1', 'score': 2.68}, {'connected_gene': 'SULT4A1', 'score': 1.18}, {'connected_gene': 'GC22P043447', 'score': 0.29}]
chr22	GH22I043385	43385795	43385964	0.76	[{'connected_gene': 'MCAT', 'score': 5.53}, {'connected_gene': 'LOC105373053', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.26}]
chr22	GH22I043266	43266035	43268315	0.31	[{'connected_gene': 'TTLL12', 'score': 5.36}, {'connected_gene': 'MCAT', 'score': 4.59}, {'connected_gene': 'GC22M043260', 'score': 0.77}, {'connected_gene': 'LOC101927447', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.18}]
chr22	GH22I043202	43202535	43204057	0.46	[{'connected_gene': 'TTLL12', 'score': 11.66}, {'connected_gene': 'GC22M043198', 'score': 0.77}, {'connected_gene': 'LOC105373052', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.11}]
chr22	GH22I043205	43205573	43206564	0.6	[{'connected_gene': 'TTLL12', 'score': 11.34}, {'connected_gene': 'LOC105373052', 'score': 0.77}, {'connected_gene': 'GC22M043198', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.12}]
chr22	GH22I043227	43227383	43227666	0.2	[{'connected_gene': 'TTLL12', 'score': 13.4}, {'connected_gene': 'ENSG00000234892', 'score': 0.77}, {'connected_gene': 'LOC105373051', 'score': 0.39}, {'connected_gene': 'SCUBE1', 'score': 0.13}]
chr22	GH22I043226	43226305	43227294	0.58	[{'connected_gene': 'TTLL12', 'score': 12.77}, {'connected_gene': 'LOC101927447', 'score': 10.81}, {'connected_gene': 'SCUBE1', 'score': 10.69}, {'connected_gene': 'MCAT', 'score': 10.3}, {'connected_gene': 'MPPED1', 'score': 10.24}, {'connected_gene': 'ENSG00000234892', 'score': 0.44}, {'connected_gene': 'LOC105373051', 'score': 0.39}]
chr22	GH22I043388	43388435	43388604	0.82	[{'connected_gene': 'LOC105373053', 'score': 0.77}, {'connected_gene': 'SCUBE1', 'score': 0.25}]
chr22	GH22I043389	43388795	43388853	0.57	[{'connected_gene': 'LOC105373053', 'score': 0.77}, {'connected_gene': 'SCUBE1', 'score': 0.25}]
chr22	GH22I043240	43240715	43241470	1.26	[{'connected_gene': 'LOC101927447', 'score': 12.03}, {'connected_gene': 'SCUBE1', 'score': 11.88}, {'connected_gene': 'TTLL12', 'score': 7.21}, {'connected_gene': 'TTLL1', 'score': 4.59}, {'connected_gene': 'ENSG00000234892', 'score': 0.44}, {'connected_gene': 'GC22P043247', 'score': 0.44}]
chr22	GH22I043234	43234821	43238189	0.87	[{'connected_gene': 'LOC101927447', 'score': 11.6}, {'connected_gene': 'SCUBE1', 'score': 11.47}, {'connected_gene': 'ENSG00000234892', 'score': 6.98}, {'connected_gene': 'TTLL12', 'score': 6.37}, {'connected_gene': 'GC22P043247', 'score': 0.39}]
chr22	GH22I043346	43346535	43346684	0.57	[{'connected_gene': 'LOC101927447', 'score': 11.91}, {'connected_gene': 'ENSG00000234892', 'score': 11.43}, {'connected_gene': 'SCUBE1', 'score': 0.77}, {'connected_gene': 'LOC105373053', 'score': 0.26}]
chr22	GH22I043305	43305905	43306128	0.31	[{'connected_gene': 'LOC101927447', 'score': 11.91}, {'connected_gene': 'SCUBE1', 'score': 11.89}, {'connected_gene': 'GC22M043296', 'score': 0.37}, {'connected_gene': 'GC22M043280', 'score': 0.34}]
chr22	GH22I043307	43307446	43307704	0.31	[{'connected_gene': 'LOC101927447', 'score': 11.91}, {'connected_gene': 'SCUBE1', 'score': 11.89}, {'connected_gene': 'GC22M043296', 'score': 0.39}, {'connected_gene': 'GC22M043280', 'score': 0.34}]
chr22	GH22I043238	43238575	43238724	0.83	[{'connected_gene': 'LOC101927447', 'score': 11.6}, {'connected_gene': 'SCUBE1', 'score': 11.48}, {'connected_gene': 'ENSG00000234892', 'score': 0.44}, {'connected_gene': 'GC22P043247', 'score': 0.44}]
chr22	GH22I043306	43306428	43306922	0.2	[{'connected_gene': 'LOC101927447', 'score': 11.91}, {'connected_gene': 'SCUBE1', 'score': 11.89}, {'connected_gene': 'GC22M043296', 'score': 0.37}, {'connected_gene': 'GC22M043280', 'score': 0.34}]
chr22	GH22I043243	43239991	43240339	0.38	[{'connected_gene': 'LOC101927447', 'score': 12.01}, {'connected_gene': 'SCUBE1', 'score': 11.88}, {'connected_gene': 'ENSG00000234892', 'score': 0.44}, {'connected_gene': 'GC22P043247', 'score': 0.44}]
chr22	GH22I043298	43298184	43298738	0.38	[{'connected_gene': 'LOC101927447', 'score': 12.16}, {'connected_gene': 'SCUBE1', 'score': 12.08}, {'connected_gene': 'GC22M043280', 'score': 0.39}, {'connected_gene': 'GC22M043296', 'score': 0.34}]
chr22	GH22I043249	43249884	43251770	0.43	[{'connected_gene': 'LOC101927447', 'score': 12.08}, {'connected_gene': 'SCUBE1', 'score': 11.93}, {'connected_gene': 'GC22M043246', 'score': 0.77}, {'connected_gene': 'GC22P043247', 'score': 0.77}, {'connected_gene': 'GC22M043260', 'score': 0.39}]
chr22	GH22I043239	43239415	43239564	0.58	[{'connected_gene': 'LOC101927447', 'score': 12.01}, {'connected_gene': 'SCUBE1', 'score': 11.88}, {'connected_gene': 'ENSG00000234892', 'score': 0.44}, {'connected_gene': 'GC22P043247', 'score': 0.44}]
chr22	GH22I043241	43241483	43241993	0.75	[{'connected_gene': 'LOC101927447', 'score': 12.03}, {'connected_gene': 'SCUBE1', 'score': 11.88}, {'connected_gene': 'ENSG00000234892', 'score': 0.44}, {'connected_gene': 'GC22P043247', 'score': 0.44}]
chr22	GH22I043268	43268460	43268949	0.2	[{'connected_gene': 'LOC101927447', 'score': 0.44}, {'connected_gene': 'GC22M043260', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.19}]
chr22	GH22I043270	43270435	43270604	0.69	[{'connected_gene': 'LOC101927447', 'score': 0.44}, {'connected_gene': 'GC22M043260', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.19}]
chr22	GH22I043275	43275575	43275984	0.93	[{'connected_gene': 'LOC101927447', 'score': 550.77}, {'connected_gene': 'GC22M043260', 'score': 0.39}, {'connected_gene': 'SCUBE1', 'score': 0.2}]
chr22	GH22I043269	43269336	43270064	0.66	[{'connected_gene': 'LOC101927447', 'score': 0.44}, {'connected_gene': 'GC22M043260', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.19}]
chr22	GH22I043272	43272002	43274163	0.87	[{'connected_gene': 'LOC101927447', 'score': 0.77}, {'connected_gene': 'GC22M043260', 'score': 0.39}, {'connected_gene': 'SCUBE1', 'score': 0.19}]
chr22	GH22I043271	43271081	43271430	0.46	[{'connected_gene': 'LOC101927447', 'score': 0.77}, {'connected_gene': 'GC22M043260', 'score': 0.44}, {'connected_gene': 'SCUBE1', 'score': 0.19}]
chr22	GH22I043278	43278365	43278950	0.63	[{'connected_gene': 'LOC101927447', 'score': 0.77}, {'connected_gene': 'GC22M043280', 'score': 0.77}, {'connected_gene': 'SCUBE1', 'score': 0.21}]
chr22	GH22I043242	43242546	43249857	0.54	[{'connected_gene': 'GC22P043247', 'score': 550.77}, {'connected_gene': 'RRP7BP', 'score': 12.81}, {'connected_gene': 'LOC101927447', 'score': 12.05}, {'connected_gene': 'SCUBE1', 'score': 11.89}, {'connected_gene': 'POLDIP3', 'score': 10.66}, {'connected_gene': 'RN7SKP80', 'score': 10.18}, {'connected_gene': 'TTLL12', 'score': 7.64}, {'connected_gene': 'GC22M043246', 'score': 0.77}, {'connected_gene': 'ENSG00000234892', 'score': 0.39}]
chr22	GH22I043235	43233952	43234155	0.59	[{'connected_gene': 'ENSG00000234892', 'score': 550.77}, {'connected_gene': 'GC22P043247', 'score': 0.39}, {'connected_gene': 'SCUBE1', 'score': 0.14}]
chr22	GH22I043291	43291839	43292105	0.46	[{'connected_gene': 'GC22M043280', 'score': 0.44}, {'connected_gene': 'GC22M043296', 'score': 0.29}, {'connected_gene': 'SCUBE1', 'score': 0.23}]
chr22	GH22I043233	43231335	43231484	0.75	[{'connected_gene': 'ENSG00000234892', 'score': 550.77}, {'connected_gene': 'SERHL2', 'score': 4.95}, {'connected_gene': 'LOC105373051', 'score': 0.37}, {'connected_gene': 'SCUBE1', 'score': 0.14}]
chr22	GH22I043232	43231649	43233103	0.62	[{'connected_gene': 'ENSG00000234892', 'score': 550.77}, {'connected_gene': 'TTLL12', 'score': 6.83}, {'connected_gene': 'GC22P043247', 'score': 0.39}, {'connected_gene': 'SCUBE1', 'score': 0.14}]
chr22	GH22I043196	43196875	43198608	0.38	[{'connected_gene': 'GC22M043198', 'score': 550.77}, {'connected_gene': 'TTLL12', 'score': 19.33}, {'connected_gene': 'LOC105373051', 'score': 4.71}, {'connected_gene': 'SCUBE1', 'score': 0.11}]
chr22	GH22I043259	43259929	43265667	1.66	[{'connected_gene': 'GC22M043260', 'score': 550.77}, {'connected_gene': 'TTLL12', 'score': 5.45}, {'connected_gene': 'LOC101927447', 'score': 0.39}, {'connected_gene': 'SCUBE1', 'score': 0.18}]
chr22	GH22I043231	43231075	43231224	0.69	[{'connected_gene': 'ENSG00000234892', 'score': 550.77}, {'connected_gene': 'LOC105373051', 'score': 0.37}, {'connected_gene': 'SCUBE1', 'score': 0.14}]