PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000497970	[[117653681, 117653834], [117654716, 117655075], [117655980, 117656107], [117658196, 117658234]]	[[117654926, 117655075], [117655980, 117656107], [117658196, 117658234]]
ENST00000256649	[[117653681, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660655, 117661389], [117663335, 117664350]]	[[117654926, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660655, 117661389], [117663335, 117663823]]
ENST00000369464	[[117653681, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660709, 117661389], [117663335, 117664384]]	[[117654926, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660709, 117661389], [117663335, 117663823]]
ENST00000369461	[[117654806, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660655, 117661389], [117663335, 117663586], [117664420, 117665209]]	[[117654926, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660655, 117661389], [117663335, 117663586], [117664420, 117664486]]
ENST00000485032	[[117660655, 117661389], [117663335, 117663523], [117664227, 117664414]]	[[117660655, 117661389], [117663335, 117663511]]
NM_025188	[[117653676, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660655, 117661389], [117663335, 117664411]]	[[117654926, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660655, 117661389], [117663335, 117663823]]
NM_001145635	[[117653676, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660709, 117661389], [117663335, 117664411]]	[[117654926, 117655075], [117655980, 117656107], [117658196, 117658311], [117659237, 117659367], [117660709, 117661389], [117663335, 117663823]]

Promoter

Chrom	Start	End	Description
chr1	117664317	117664379	CAGE_peak_1_at_TRIM45_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I116569	116569182	116572275	2.54	[{'connected_gene': 'CD58', 'score': 559.08}, {'connected_gene': 'MAN1A2', 'score': 11.52}, {'connected_gene': 'TRIM45', 'score': 9.93}, {'connected_gene': 'ATP1A1-AS1', 'score': 5.58}, {'connected_gene': 'ATP1A1', 'score': 4.84}, {'connected_gene': 'IGSF3', 'score': 4.41}, {'connected_gene': 'CD101', 'score': 3.64}, {'connected_gene': 'TTF2', 'score': 1.71}, {'connected_gene': 'MIR548AC', 'score': 0.39}]
chr1	GH01I116481	116481277	116485842	1.35	[{'connected_gene': 'ATP1A1-AS1', 'score': 10.96}, {'connected_gene': 'ATP1A1', 'score': 10.78}, {'connected_gene': 'CASQ2', 'score': 4.98}, {'connected_gene': 'TRIM45', 'score': 4.4}, {'connected_gene': 'LINC01762', 'score': 0.77}, {'connected_gene': 'ENSG00000224950', 'score': 0.37}]
chr1	GH01I117076	117076404	117078223	0.98	[{'connected_gene': 'TTF2', 'score': 12.8}, {'connected_gene': 'TRIM45', 'score': 11.09}, {'connected_gene': 'CD101', 'score': 3.4}, {'connected_gene': 'MIR942', 'score': 0.37}]
chr1	GH01I117114	117114004	117115201	0.49	[{'connected_gene': 'TRIM45', 'score': 5.67}, {'connected_gene': 'TTF2', 'score': 5.01}, {'connected_gene': 'PIR35685', 'score': 0.77}, {'connected_gene': 'MIR942', 'score': 0.37}]
chr1	GH01I117262	117262767	117263955	0.31	[{'connected_gene': 'TRIM45', 'score': 10.2}, {'connected_gene': 'MAN1A2', 'score': 9.99}, {'connected_gene': 'VTCN1', 'score': 0.44}, {'connected_gene': 'ENSG00000277141', 'score': 0.37}]
chr1	GH01I117120	117120674	117123582	2.02	[{'connected_gene': 'TRIM45', 'score': 560.67}, {'connected_gene': 'WDR3', 'score': 49.57}, {'connected_gene': 'ATP1A1-AS1', 'score': 18.19}, {'connected_gene': 'VTCN1', 'score': 16.37}, {'connected_gene': 'ENSG00000212266', 'score': 8.63}, {'connected_gene': 'TTF2', 'score': 4.98}, {'connected_gene': 'PIR35685', 'score': 0.77}]
chr1	GH01I117096	117096621	117098260	0.62	[{'connected_gene': 'TRIM45', 'score': 11.14}, {'connected_gene': 'MIR942', 'score': 0.77}, {'connected_gene': 'PIR35685', 'score': 0.34}, {'connected_gene': 'TTF2', 'score': 0.28}]
chr1	GH01I117266	117266601	117272576	0.82	[{'connected_gene': 'VTCN1', 'score': 550.77}, {'connected_gene': 'TRIM45', 'score': 10.2}, {'connected_gene': 'MAN1A2', 'score': 10.0}, {'connected_gene': 'LINC01525', 'score': 4.82}, {'connected_gene': 'ENSG00000277141', 'score': 0.31}]
chr1	GH01I116371	116371905	116381809	2.59	[{'connected_gene': 'ATP1A1', 'score': 556.73}, {'connected_gene': 'ATP1A1-AS1', 'score': 17.46}, {'connected_gene': 'CD58', 'score': 9.98}, {'connected_gene': 'TRIM45', 'score': 9.92}, {'connected_gene': 'NAP1L4P1', 'score': 4.21}, {'connected_gene': 'SLC22A15', 'score': 2.19}, {'connected_gene': 'GC01P116389', 'score': 0.39}, {'connected_gene': 'GC01P116388', 'score': 0.39}]
chr1	GH01I116877	116877161	116880253	1.54	[{'connected_gene': 'MAN1A2', 'score': 41.25}, {'connected_gene': 'ATP1A1-AS1', 'score': 39.48}, {'connected_gene': 'PTGFRN', 'score': 11.39}, {'connected_gene': 'CD2', 'score': 10.77}, {'connected_gene': 'CD101', 'score': 10.29}, {'connected_gene': 'TRIM45', 'score': 9.97}, {'connected_gene': 'TTF2', 'score': 1.63}, {'connected_gene': 'LOC105378927', 'score': 0.77}, {'connected_gene': 'FTH1P22', 'score': 0.15}]
chr1	GH01I117339	117339368	117340803	1.22	[{'connected_gene': 'MAN1A2', 'score': 12.11}, {'connected_gene': 'ENSG00000271427', 'score': 11.29}, {'connected_gene': 'TRIM45', 'score': 10.09}, {'connected_gene': 'CD58', 'score': 9.97}, {'connected_gene': 'GC01M117313', 'score': 0.37}, {'connected_gene': 'LINC01525', 'score': 0.26}]
chr1	GH01I117128	117128401	117129000	0.56	[{'connected_gene': 'MIR942', 'score': 10.37}, {'connected_gene': 'TTF2', 'score': 10.28}, {'connected_gene': 'MAN1A2', 'score': 9.43}, {'connected_gene': 'VTCN1', 'score': 8.28}, {'connected_gene': 'TRIM45', 'score': 0.44}, {'connected_gene': 'RPS15AP9', 'score': 0.44}]
chr1	GH01I117070	117070419	117070568	0.46	[{'connected_gene': 'MIR942', 'score': 11.47}, {'connected_gene': 'TRIM45', 'score': 11.18}, {'connected_gene': 'TTF2', 'score': 0.39}]
chr1	GH01I117071	117070179	117070328	0.57	[{'connected_gene': 'MIR942', 'score': 11.47}, {'connected_gene': 'TRIM45', 'score': 11.18}, {'connected_gene': 'TTF2', 'score': 0.44}]
chr1	GH01I117091	117091875	117095488	1.08	[{'connected_gene': 'MIR942', 'score': 550.77}, {'connected_gene': 'TRIM45', 'score': 7.48}, {'connected_gene': 'TTF2', 'score': 6.82}]
chr1	GH01I117069	117069457	117070024	0.46	[{'connected_gene': 'MIR942', 'score': 11.47}, {'connected_gene': 'TRIM45', 'score': 11.18}, {'connected_gene': 'TTF2', 'score': 9.94}]
chr1	GH01I117050	117050820	117052623	0.87	[{'connected_gene': 'PIR49222', 'score': 550.77}, {'connected_gene': 'CD101', 'score': 10.55}, {'connected_gene': 'CD2', 'score': 10.49}, {'connected_gene': 'CD58', 'score': 10.15}, {'connected_gene': 'TRIM45', 'score': 9.96}, {'connected_gene': 'C1orf137', 'score': 9.62}, {'connected_gene': 'LOC101929099', 'score': 0.44}]