PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000310421	[[67540721, 67547607], [67563692, 67563779], [67576483, 67579452]]	[[67546735, 67547607], [67563692, 67563779], [67576483, 67579193]]
NM_025054	[[67542487, 67547607], [67563692, 67563779], [67576483, 67579452]]	[[67546735, 67547607], [67563692, 67563779], [67576483, 67579193]]

Promoter

Chrom	Start	End	Description
chr8	67576938	67576966	CAGE_peak_4_at_VCPIP1_5end
chr8	67579326	67579368	CAGE_peak_2_at_VCPIP1_5end
chr8	67579374	67579416	CAGE_peak_3_at_VCPIP1_5end
chr8	67579418	67579498	CAGE_peak_1_at_VCPIP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I066922	66922052	66927158	1.58	[{'connected_gene': 'SNHG6', 'score': 550.77}, {'connected_gene': 'ARFGEF1', 'score': 26.93}, {'connected_gene': 'C8orf44', 'score': 20.36}, {'connected_gene': 'CSPP1', 'score': 12.91}, {'connected_gene': 'TCF24', 'score': 5.12}, {'connected_gene': 'VCPIP1', 'score': 4.29}, {'connected_gene': 'SNORD87', 'score': 0.77}, {'connected_gene': 'GC08M066924', 'score': 0.77}, {'connected_gene': 'GC08M066923', 'score': 0.77}, {'connected_gene': 'MCMDC2', 'score': 0.23}]
chr8	GH08I066663	66663137	66669258	2.28	[{'connected_gene': 'C8orf44', 'score': 555.33}, {'connected_gene': 'C8orf44-SGK3', 'score': 550.77}, {'connected_gene': 'VCPIP1', 'score': 550.77}, {'connected_gene': 'ARFGEF1', 'score': 21.09}, {'connected_gene': 'MYBL1', 'score': 11.59}, {'connected_gene': 'C8orf46', 'score': 4.53}, {'connected_gene': 'ENSG00000201365', 'score': 0.39}]
chr8	GH08I066661	66661859	66663020	0.98	[{'connected_gene': 'MYBL1', 'score': 11.6}, {'connected_gene': 'C8orf44', 'score': 4.99}, {'connected_gene': 'ADHFE1', 'score': 4.75}, {'connected_gene': 'VCPIP1', 'score': 0.77}, {'connected_gene': 'ENSG00000201365', 'score': 0.44}]
chr8	GH08I066605	66605952	66614801	2.53	[{'connected_gene': 'MYBL1', 'score': 558.84}, {'connected_gene': 'ARFGEF1', 'score': 16.66}, {'connected_gene': 'C8orf44', 'score': 14.44}, {'connected_gene': 'ADHFE1', 'score': 11.98}, {'connected_gene': 'RRS1', 'score': 10.42}, {'connected_gene': 'RRS1-AS1', 'score': 10.42}, {'connected_gene': 'C8orf46', 'score': 4.71}, {'connected_gene': 'VCPIP1', 'score': 2.9}, {'connected_gene': 'GC08M066612', 'score': 0.77}, {'connected_gene': 'GC08M066613', 'score': 0.77}, {'connected_gene': 'LOC105375884', 'score': 0.77}, {'connected_gene': 'RNU6-1324P', 'score': 0.14}]
chr8	GH08I066781	66781002	66782402	1.01	[{'connected_gene': 'SGK3', 'score': 8.51}, {'connected_gene': 'C8orf44', 'score': 4.63}, {'connected_gene': 'VCPIP1', 'score': 1.23}, {'connected_gene': 'GC08M066750', 'score': 0.77}, {'connected_gene': 'PTTG3P', 'score': 0.39}, {'connected_gene': 'C8orf44-SGK3', 'score': 0.14}]
chr8	GH08I066711	66711599	66714577	2.4	[{'connected_gene': 'SGK3', 'score': 555.6}, {'connected_gene': 'C8orf44', 'score': 4.8}, {'connected_gene': 'VCPIP1', 'score': 1.61}, {'connected_gene': 'C8orf44-SGK3', 'score': 0.25}, {'connected_gene': 'PTTG3P', 'score': 0.23}]
chr8	GH08I066531	66531369	66537459	1.55	[{'connected_gene': 'RNU6-1324P', 'score': 12.51}, {'connected_gene': 'MYBL1', 'score': 6.69}, {'connected_gene': 'ADHFE1', 'score': 5.99}, {'connected_gene': 'VCPIP1', 'score': 3.27}, {'connected_gene': 'MCMDC2', 'score': 2.66}, {'connected_gene': 'GC08M066613', 'score': 0.18}]
chr8	GH08I066652	66652066	66652215	0.38	[{'connected_gene': 'GC08P066654', 'score': 550.77}, {'connected_gene': 'ENSG00000201365', 'score': 550.77}, {'connected_gene': 'VCPIP1', 'score': 0.37}, {'connected_gene': 'GC08M066630', 'score': 0.34}]
chr8	GH08I066648	66648846	66648995	0.2	[{'connected_gene': 'GC08P066654', 'score': 0.77}, {'connected_gene': 'GC08M066630', 'score': 0.37}, {'connected_gene': 'VCPIP1', 'score': 0.37}]
chr8	GH08I066628	66628746	66628895	0.2	[{'connected_gene': 'GC08M066630', 'score': 550.77}, {'connected_gene': 'MYBL1', 'score': 0.39}, {'connected_gene': 'GC08M066612', 'score': 0.39}, {'connected_gene': 'VCPIP1', 'score': 0.28}]
chr8	GH08I066787	66787551	66787849	0.54	[{'connected_gene': 'GC08M066750', 'score': 550.77}, {'connected_gene': 'SGK3', 'score': 13.11}, {'connected_gene': 'PPP1R42', 'score': 9.75}, {'connected_gene': 'CSPP1', 'score': 9.75}, {'connected_gene': 'COPS5', 'score': 9.75}, {'connected_gene': 'ADHFE1', 'score': 4.09}, {'connected_gene': 'VCPIP1', 'score': 1.53}, {'connected_gene': 'MCMDC2', 'score': 0.18}, {'connected_gene': 'C8orf44-SGK3', 'score': 0.13}]