PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000320767	[[160394947, 160396233]]	[[160395134, 160395713]]
NM_025047	[[160394947, 160396236]]	[[160395134, 160395713]]

Promoter

Chrom	Start	End	Description
chr3	160394940	160394954	CAGE_peak_1_at_ARL14_5end
chr3	160394961	160394996	CAGE_peak_2_at_ARL14_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I160675	160675579	160680334	1.45	[{'connected_gene': 'ARL14', 'score': 550.77}, {'connected_gene': 'KPNA4', 'score': 6.22}, {'connected_gene': 'IFT80', 'score': 5.28}, {'connected_gene': 'ENSG00000207084', 'score': 0.37}]
chr3	GH03I160672	160672113	160672262	0.2	[{'connected_gene': 'ARL14', 'score': 0.77}, {'connected_gene': 'GC03P160584', 'score': 0.17}]
chr3	GH03I160641	160641427	160642396	0.64	[{'connected_gene': 'ARL14', 'score': 0.28}, {'connected_gene': 'GC03P160584', 'score': 0.22}]
chr3	GH03I160885	160885266	160886682	1.08	[{'connected_gene': 'SPTSSB', 'score': 11.52}, {'connected_gene': 'ARL14', 'score': 9.79}, {'connected_gene': 'B3GALNT1', 'score': 8.53}, {'connected_gene': 'PIR58593', 'score': 0.21}, {'connected_gene': 'PPM1L', 'score': 0.12}]
chr3	GH03I160935	160935493	160935642	0.82	[{'connected_gene': 'PPM1L', 'score': 11.38}, {'connected_gene': 'ARL14', 'score': 9.78}, {'connected_gene': 'PIR58593', 'score': 0.39}]
chr3	GH03I160670	160670618	160672042	0.62	[{'connected_gene': 'ENSG00000207084', 'score': 11.13}, {'connected_gene': 'KPNA4', 'score': 5.39}, {'connected_gene': 'ARL14', 'score': 0.44}, {'connected_gene': 'GC03P160584', 'score': 0.17}]
chr3	GH03I160665	160665021	160668292	1.09	[{'connected_gene': 'ENSG00000207084', 'score': 11.11}, {'connected_gene': 'KPNA4', 'score': 7.03}, {'connected_gene': 'ARL14', 'score': 0.39}, {'connected_gene': 'GC03P160584', 'score': 0.18}]