PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000586470	[[2867332, 2867422], [2873493, 2873616], [2876090, 2876274], [2877270, 2877440]]	[[2867419, 2867422], [2873493, 2873616], [2876090, 2876174]]
ENST00000307635	[[2867332, 2867422], [2873493, 2873620], [2876090, 2876274], [2877270, 2878501]]	[[2867419, 2867422], [2873493, 2873620], [2876090, 2876274], [2877270, 2878327]]
ENST00000586426	[[2867332, 2867422], [2873493, 2873620], [2876090, 2876274], [2877273, 2878515]]	[[2867419, 2867422], [2873493, 2873620], [2876090, 2876274], [2877273, 2878327]]
NM_001300843	[[2867332, 2867422], [2873493, 2873620], [2876090, 2876274], [2877273, 2878515]]	[[2867419, 2867422], [2873493, 2873620], [2876090, 2876274], [2877273, 2878327]]
NM_024967	[[2867332, 2867422], [2873493, 2873620], [2876090, 2876274], [2877270, 2878515]]	[[2867419, 2867422], [2873493, 2873620], [2876090, 2876274], [2877270, 2878327]]

Promoter

Chrom	Start	End	Description
chr19	2867298	2867317	CAGE_peak_2_at_ZNF556_5end
chr19	2867325	2867348	CAGE_peak_1_at_ZNF556_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I002866	2866491	2868717	1.56	[{'connected_gene': 'ZNF556', 'score': 565.99}, {'connected_gene': 'SF3A2', 'score': 9.98}, {'connected_gene': 'ZNF555', 'score': 7.82}, {'connected_gene': 'SMIM24', 'score': 4.76}, {'connected_gene': 'ENSG00000267398', 'score': 0.44}]
chr19	GH19I002893	2893223	2894347	0.38	[{'connected_gene': 'ZNF556', 'score': 12.11}, {'connected_gene': 'ZNF77', 'score': 11.69}, {'connected_gene': 'ZNF555', 'score': 11.68}, {'connected_gene': 'BTBD2', 'score': 4.58}, {'connected_gene': 'LOC100419704', 'score': 0.77}, {'connected_gene': 'ENSG00000267398', 'score': 0.37}]
chr19	GH19I002863	2863555	2864569	0.43	[{'connected_gene': 'ZNF556', 'score': 14.72}, {'connected_gene': 'ENSG00000267063', 'score': 0.44}]
chr19	GH19I002864	2864765	2866322	0.85	[{'connected_gene': 'ZNF556', 'score': 565.07}, {'connected_gene': 'ENSG00000267063', 'score': 0.44}]
chr19	GH19I002922	2922873	2924076	0.77	[{'connected_gene': 'ZNF77', 'score': 12.36}, {'connected_gene': 'ZNF556', 'score': 11.74}, {'connected_gene': 'ZNF555', 'score': 11.39}, {'connected_gene': 'SLC39A3', 'score': 10.76}, {'connected_gene': 'TLE6', 'score': 10.58}, {'connected_gene': 'LOC101928631', 'score': 9.91}, {'connected_gene': 'GC19M002916', 'score': 0.77}, {'connected_gene': 'GC19M002923', 'score': 0.37}, {'connected_gene': 'GC19M002924', 'score': 0.37}]
chr19	GH19I002693	2693534	2696661	1.2	[{'connected_gene': 'ZNF77', 'score': 22.41}, {'connected_gene': 'CACTIN-AS1', 'score': 18.96}, {'connected_gene': 'DIRAS1', 'score': 18.4}, {'connected_gene': 'CACTIN', 'score': 16.78}, {'connected_gene': 'GNG7', 'score': 15.73}, {'connected_gene': 'SLC39A3', 'score': 12.29}, {'connected_gene': 'ZNF556', 'score': 10.52}, {'connected_gene': 'LINGO3', 'score': 2.28}, {'connected_gene': 'ENSG00000276097', 'score': 0.44}, {'connected_gene': 'PIR43863', 'score': 0.28}]
chr19	GH19I002872	2872200	2872600	0.52	[{'connected_gene': 'ZNF555', 'score': 12.19}, {'connected_gene': 'ZNF57', 'score': 11.89}, {'connected_gene': 'LOC101928631', 'score': 11.81}, {'connected_gene': 'ZNF77', 'score': 11.45}, {'connected_gene': 'AES', 'score': 10.36}, {'connected_gene': 'ENSG00000267398', 'score': 0.77}, {'connected_gene': 'ZNF556', 'score': 0.44}]
chr19	GH19I002887	2887393	2889444	1.25	[{'connected_gene': 'ZNF555', 'score': 17.16}, {'connected_gene': 'LOC101928631', 'score': 12.59}, {'connected_gene': 'ZNF556', 'score': 12.16}, {'connected_gene': 'ZNF77', 'score': 11.8}, {'connected_gene': 'ZNF554', 'score': 11.52}, {'connected_gene': 'THOP1', 'score': 11.47}, {'connected_gene': 'SLC39A3', 'score': 10.59}, {'connected_gene': 'LOC100419704', 'score': 0.44}, {'connected_gene': 'ENSG00000267398', 'score': 0.39}]
chr19	GH19I002690	2690445	2692940	0.46	[{'connected_gene': 'DIRAS1', 'score': 18.35}, {'connected_gene': 'SLC39A3', 'score': 12.29}, {'connected_gene': 'ZNF556', 'score': 10.52}, {'connected_gene': 'GNG7', 'score': 8.96}, {'connected_gene': 'ENSG00000276097', 'score': 0.44}, {'connected_gene': 'PIR43863', 'score': 0.28}]
chr19	GH19I002819	2819203	2820801	2.04	[{'connected_gene': 'ZNF554', 'score': 577.02}, {'connected_gene': 'GC19P002822', 'score': 550.77}, {'connected_gene': 'ZNF77', 'score': 33.03}, {'connected_gene': 'CACTIN-AS1', 'score': 24.53}, {'connected_gene': 'THOP1', 'score': 23.04}, {'connected_gene': 'CACTIN', 'score': 21.36}, {'connected_gene': 'SF3A2', 'score': 20.37}, {'connected_gene': 'LOC100288123', 'score': 18.63}, {'connected_gene': 'SPPL2B', 'score': 13.39}, {'connected_gene': 'ZNF556', 'score': 12.6}, {'connected_gene': 'DOT1L', 'score': 11.99}, {'connected_gene': 'ZNF57', 'score': 11.84}, {'connected_gene': 'LOC101928631', 'score': 11.81}, {'connected_gene': 'C19orf71', 'score': 11.57}, {'connected_gene': 'ZNF555', 'score': 11.07}, {'connected_gene': 'SLC39A3', 'score': 10.91}, {'connected_gene': 'ENSG00000267139', 'score': 10.52}, {'connected_gene': 'TLE6', 'score': 10.25}, {'connected_gene': 'APBA3', 'score': 9.69}, {'connected_gene': 'GC19P002827', 'score': 0.44}]