PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000529034	[[36317837, 36317988], [36422546, 36422835], [36424847, 36424928], [36453402, 36453443]]	None
ENST00000530639	[[36317837, 36317988], [36422546, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36472758, 36472885], [36483891, 36485194]]	[[36422671, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36472758, 36472885], [36483891, 36484286]]
ENST00000532121	[[36371417, 36371615], [36422546, 36422835], [36424847, 36424928], [36440804, 36440808]]	[[36422671, 36422835], [36424847, 36424928], [36440804, 36440808]]
ENST00000311599	[[36397534, 36397708], [36398178, 36398254], [36422546, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36472758, 36472885], [36483891, 36486753]]	[[36422749, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36472758, 36472885], [36483891, 36484286]]
ENST00000378867	[[36397554, 36397708], [36398178, 36398254], [36422546, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36472758, 36472885], [36483891, 36486754]]	[[36422671, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36472758, 36472885], [36483891, 36484286]]
ENST00000389693	[[36397587, 36397708], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36472758, 36472885], [36483891, 36486515]]	None
ENST00000527487	[[36422614, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36483891, 36483989]]	[[36422671, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36483891, 36483924]]
ENST00000531269	[[36317837, 36317988], [36318920, 36318981], [36350667, 36350891]]	None
ENST00000527172	[[36322510, 36322620], [36415395, 36415561], [36422546, 36422814]]	[[36422671, 36422814]]
ENST00000526728	[[36383657, 36383731], [36415395, 36415561], [36422546, 36422835], [36424847, 36424910]]	[[36422671, 36422835], [36424847, 36424910]]
ENST00000524380	[[36397751, 36397787], [36398178, 36398254], [36415395, 36415561], [36422546, 36422816]]	[[36422671, 36422816]]
ENST00000526682	[[36397930, 36398254], [36415395, 36415561], [36422546, 36422835], [36424847, 36424873]]	[[36422671, 36422835], [36424847, 36424873]]
ENST00000532843	[[36397931, 36398254], [36400930, 36401017], [36402069, 36402138], [36403189, 36403245]]	None
ENST00000527751	[[36397950, 36398254], [36415395, 36415561], [36417663, 36417746]]	None
ENST00000530252	[[36397951, 36398254], [36422546, 36422820]]	[[36422671, 36422820]]
ENST00000532578	[[36398093, 36398254], [36415395, 36415561], [36415945, 36415984]]	None
ENST00000530050	[[36399071, 36399274], [36422546, 36422835], [36424847, 36424909]]	[[36422671, 36422835], [36424847, 36424909]]
ENST00000526679	[[36419961, 36420377], [36422546, 36422835], [36424847, 36424925]]	[[36422671, 36422835], [36424847, 36424925]]
ENST00000525672	[[36475499, 36475656], [36483891, 36484331]]	None
ENST00000529020	[[36475508, 36475571], [36476218, 36476368], [36483891, 36484163]]	None
ENST00000530627	[[36476838, 36476996], [36483891, 36485226]]	None
NM_001160167	[[36317724, 36317988], [36422546, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36472758, 36472885], [36483891, 36486754]]	[[36422671, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36472758, 36472885], [36483891, 36484286]]
NM_001160168	[[36397534, 36397708], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36472758, 36472885], [36483891, 36486754]]	[[36397706, 36397708], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36472758, 36472885], [36483891, 36484286]]
NM_024841	[[36397534, 36397708], [36398178, 36398254], [36422546, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36472758, 36472885], [36483891, 36486754]]	[[36422671, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36472758, 36472885], [36483891, 36484286]]
NM_001160169	[[36422546, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36483891, 36486754]]	[[36422671, 36422835], [36424847, 36424928], [36440804, 36440853], [36453402, 36453460], [36458934, 36459026], [36467849, 36467990], [36483891, 36483924]]

Promoter

Chrom	Start	End	Description
chr11	36317689	36317699	CAGE_peak_11_at_PRR5L_5end
chr11	36317830	36317850	CAGE_peak_3_at_PRR5L_5end
chr11	36317852	36317861	CAGE_peak_12_at_PRR5L_5end
chr11	36397528	36397545	CAGE_peak_5_at_PRR5L_5end
chr11	36397731	36397745	CAGE_peak_14_at_PRR5L_5end
chr11	36397915	36397982	CAGE_peak_1_at_PRR5L_5end
chr11	36397983	36398010	CAGE_peak_2_at_PRR5L_5end
chr11	36399308	36399312	CAGE_peak_10_at_PRR5L_5end
chr11	36475492	36475517	CAGE_peak_8_at_PRR5L_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I036408	36408269	36413618	1.51	[{'connected_gene': 'PRR5L', 'score': 35.33}, {'connected_gene': 'TRAF6', 'score': 3.71}, {'connected_gene': 'COMMD9', 'score': 1.21}, {'connected_gene': 'ENSG00000255060', 'score': 0.37}, {'connected_gene': 'ENSG00000255186', 'score': 0.34}]
chr11	GH11I036499	36499280	36503812	0.92	[{'connected_gene': 'PRR5L', 'score': 17.5}, {'connected_gene': 'ENSG00000255060', 'score': 10.12}, {'connected_gene': 'TRAF6', 'score': 5.44}, {'connected_gene': 'GC11M036483', 'score': 0.39}]
chr11	GH11I036469	36469060	36471074	0.72	[{'connected_gene': 'PRR5L', 'score': 18.95}, {'connected_gene': 'ENSG00000255060', 'score': 11.85}, {'connected_gene': 'RAG1', 'score': 10.92}, {'connected_gene': 'TRAF6', 'score': 10.92}, {'connected_gene': 'COMMD9', 'score': 10.86}, {'connected_gene': 'GC11M036483', 'score': 0.37}, {'connected_gene': 'GC11P036439', 'score': 0.29}]
chr11	GH11I036419	36419867	36423167	1.47	[{'connected_gene': 'PRR5L', 'score': 12.02}, {'connected_gene': 'COMMD9', 'score': 1.78}, {'connected_gene': 'TRAF6', 'score': 1.6}, {'connected_gene': 'ENSG00000255060', 'score': 0.77}, {'connected_gene': 'ENSG00000255186', 'score': 0.29}]
chr11	GH11I036360	36360354	36365025	1.09	[{'connected_gene': 'PRR5L', 'score': 17.19}, {'connected_gene': 'ENSG00000255060', 'score': 11.96}, {'connected_gene': 'COMMD9', 'score': 11.3}, {'connected_gene': 'PIR61917', 'score': 0.44}, {'connected_gene': 'GC11P036377', 'score': 0.39}]
chr11	GH11I036344	36344525	36347592	0.83	[{'connected_gene': 'PRR5L', 'score': 16.03}, {'connected_gene': 'ENSG00000255060', 'score': 10.9}, {'connected_gene': 'COMMD9', 'score': 5.02}, {'connected_gene': 'PIR61917', 'score': 0.39}, {'connected_gene': 'ENSG00000254566', 'score': 0.34}]
chr11	GH11I036326	36326775	36327920	0.76	[{'connected_gene': 'PRR5L', 'score': 5.73}, {'connected_gene': 'COMMD9', 'score': 4.59}, {'connected_gene': 'ENSG00000254566', 'score': 0.77}, {'connected_gene': 'PIR61917', 'score': 0.31}]
chr11	GH11I036278	36278860	36279070	0.55	[{'connected_gene': 'PRR5L', 'score': 4.63}, {'connected_gene': 'COMMD9', 'score': 0.39}, {'connected_gene': 'GC11M036246', 'score': 0.31}]
chr11	GH11I036297	36296485	36298108	0.6	[{'connected_gene': 'PRR5L', 'score': 550.77}, {'connected_gene': 'ENSG00000255060', 'score': 9.78}, {'connected_gene': 'COMMD9', 'score': 9.72}, {'connected_gene': 'ENSG00000254566', 'score': 0.31}]
chr11	GH11I036328	36328624	36330674	0.57	[{'connected_gene': 'PRR5L', 'score': 5.69}, {'connected_gene': 'ENSG00000254566', 'score': 0.44}, {'connected_gene': 'PIR61917', 'score': 0.31}]
chr11	GH11I036370	36370935	36374381	0.83	[{'connected_gene': 'PRR5L', 'score': 15.28}, {'connected_gene': 'ENSG00000255060', 'score': 11.25}, {'connected_gene': 'GC11P036377', 'score': 0.77}, {'connected_gene': 'PIR61917', 'score': 0.37}]
chr11	GH11I036405	36405787	36407832	0.6	[{'connected_gene': 'PRR5L', 'score': 10.38}, {'connected_gene': 'ENSG00000255060', 'score': 0.37}, {'connected_gene': 'ENSG00000255186', 'score': 0.34}]
chr11	GH11I036375	36375801	36381434	2.23	[{'connected_gene': 'PRR5L', 'score': 559.92}, {'connected_gene': 'GC11P036377', 'score': 550.77}, {'connected_gene': 'ENSG00000255060', 'score': 11.99}, {'connected_gene': 'ENSG00000255186', 'score': 0.44}]
chr11	GH11I036398	36398324	36401400	1.5	[{'connected_gene': 'PRR5L', 'score': 550.15}, {'connected_gene': 'ENSG00000255060', 'score': 12.38}, {'connected_gene': 'ENSG00000255186', 'score': 0.39}]
chr11	GH11I036415	36415070	36415778	0.2	[{'connected_gene': 'PRR5L', 'score': 15.99}, {'connected_gene': 'ENSG00000255060', 'score': 0.39}, {'connected_gene': 'ENSG00000255186', 'score': 0.31}]
chr11	GH11I036416	36416248	36418653	0.43	[{'connected_gene': 'PRR5L', 'score': 17.24}, {'connected_gene': 'ENSG00000255060', 'score': 0.44}, {'connected_gene': 'ENSG00000255186', 'score': 0.29}]
chr11	GH11I036451	36451652	36457183	0.96	[{'connected_gene': 'PRR5L', 'score': 8.94}, {'connected_gene': 'GC11P036439', 'score': 0.39}, {'connected_gene': 'GC11M036483', 'score': 0.29}]
chr11	GH11I036349	36349420	36350400	0.86	[{'connected_gene': 'PRR5L', 'score': 16.76}, {'connected_gene': 'ENSG00000255060', 'score': 10.64}, {'connected_gene': 'PIR61917', 'score': 0.44}, {'connected_gene': 'ENSG00000254566', 'score': 0.31}]
chr11	GH11I036448	36448071	36448237	0.57	[{'connected_gene': 'PRR5L', 'score': 6.98}, {'connected_gene': 'GC11P036439', 'score': 0.44}, {'connected_gene': 'GC11M036483', 'score': 0.28}]
chr11	GH11I036430	36430768	36433316	0.94	[{'connected_gene': 'PRR5L', 'score': 7.55}, {'connected_gene': 'GC11P036439', 'score': 0.44}, {'connected_gene': 'ENSG00000255060', 'score': 0.44}]
chr11	GH11I036450	36450001	36450600	0.66	[{'connected_gene': 'PRR5L', 'score': 9.35}, {'connected_gene': 'GC11P036439', 'score': 0.39}, {'connected_gene': 'GC11M036483', 'score': 0.28}]
chr11	GH11I036296	36296239	36296298	0.5	[{'connected_gene': 'PRR5L', 'score': 550.77}, {'connected_gene': 'ENSG00000254566', 'score': 0.31}]
chr11	GH11I036507	36507872	36513056	2.09	[{'connected_gene': 'TRAF6', 'score': 569.26}, {'connected_gene': 'GC11P036511', 'score': 550.77}, {'connected_gene': 'RAG1', 'score': 550.77}, {'connected_gene': 'ENSG00000280331', 'score': 550.77}, {'connected_gene': 'GC11P036512', 'score': 550.77}, {'connected_gene': 'PRR5L', 'score': 5.77}, {'connected_gene': 'COMMD9', 'score': 4.77}, {'connected_gene': 'GC11M036546', 'score': 0.28}]
chr11	GH11I036619	36619436	36619674	0.83	[{'connected_gene': 'RAG2', 'score': 5.9}, {'connected_gene': 'RAG1', 'score': 5.11}, {'connected_gene': 'PRR5L', 'score': 3.46}, {'connected_gene': 'GC11M036597', 'score': 0.39}, {'connected_gene': 'C11orf74', 'score': 0.31}, {'connected_gene': 'GC11M036644', 'score': 0.28}]
chr11	GH11I036292	36292600	36292800	0.72	[{'connected_gene': 'RAG1', 'score': 10.63}, {'connected_gene': 'TRAF6', 'score': 10.63}, {'connected_gene': 'ENSG00000255060', 'score': 10.31}, {'connected_gene': 'COMMD9', 'score': 0.77}, {'connected_gene': 'PRR5L', 'score': 0.77}]
chr11	GH11I036293	36292411	36292560	0.78	[{'connected_gene': 'RAG1', 'score': 10.63}, {'connected_gene': 'TRAF6', 'score': 10.63}, {'connected_gene': 'ENSG00000255060', 'score': 10.31}, {'connected_gene': 'COMMD9', 'score': 0.77}, {'connected_gene': 'PRR5L', 'score': 0.77}]
chr11	GH11I036493	36493091	36493202	0.54	[{'connected_gene': 'COMMD9', 'score': 10.89}, {'connected_gene': 'ENSG00000255060', 'score': 10.66}, {'connected_gene': 'PRR5L', 'score': 10.49}, {'connected_gene': 'GC11M036483', 'score': 0.44}, {'connected_gene': 'TRAF6', 'score': 0.37}]
chr11	GH11I036492	36492831	36493000	0.62	[{'connected_gene': 'COMMD9', 'score': 10.89}, {'connected_gene': 'ENSG00000255060', 'score': 10.66}, {'connected_gene': 'PRR5L', 'score': 10.49}, {'connected_gene': 'GC11M036483', 'score': 0.44}, {'connected_gene': 'TRAF6', 'score': 0.37}]
chr11	GH11I036309	36309653	36309986	0.25	[{'connected_gene': 'COMMD9', 'score': 11.23}, {'connected_gene': 'ENSG00000255060', 'score': 10.87}, {'connected_gene': 'PRR5L', 'score': 6.01}, {'connected_gene': 'ENSG00000254566', 'score': 0.39}]
chr11	GH11I036108	36108405	36112610	1.14	[{'connected_gene': 'LDLRAD3', 'score': 10.06}, {'connected_gene': 'TRIM44', 'score': 9.5}, {'connected_gene': 'PRR5L', 'score': 6.14}, {'connected_gene': 'PIR54286', 'score': 0.34}, {'connected_gene': 'LOC101928510', 'score': 0.29}]
chr11	GH11I036593	36593847	36595773	2.26	[{'connected_gene': 'C11orf74', 'score': 550.77}, {'connected_gene': 'TRAF6', 'score': 13.32}, {'connected_gene': 'PRR5L', 'score': 6.05}, {'connected_gene': 'RAG2', 'score': 0.77}]
chr11	GH11I036564	36564414	36565000	1	[{'connected_gene': 'C11orf74', 'score': 12.07}, {'connected_gene': 'RAG2', 'score': 12.05}, {'connected_gene': 'PRR5L', 'score': 4.87}, {'connected_gene': 'GC11P036555', 'score': 0.44}, {'connected_gene': 'RAG1', 'score': 0.23}]
chr11	GH11I036709	36709353	36709385	0.22	[{'connected_gene': 'LOC105376631', 'score': 550.77}, {'connected_gene': 'RAG2', 'score': 10.38}, {'connected_gene': 'C11orf74', 'score': 10.37}, {'connected_gene': 'PRR5L', 'score': 5.84}, {'connected_gene': 'LOC100422241', 'score': 0.39}]
chr11	GH11I036696	36696412	36698232	0.31	[{'connected_gene': 'LOC100422241', 'score': 550.77}, {'connected_gene': 'PRR5L', 'score': 5.14}, {'connected_gene': 'LOC105376631', 'score': 0.39}]
chr11	GH11I036487	36487164	36488983	0.4	[{'connected_gene': 'GC11M036483', 'score': 550.77}, {'connected_gene': 'PRR5L', 'score': 17.72}, {'connected_gene': 'TRAF6', 'score': 16.98}, {'connected_gene': 'RAG1', 'score': 12.13}, {'connected_gene': 'COMMD9', 'score': 11.12}, {'connected_gene': 'ENSG00000255060', 'score': 10.71}]
chr11	GH11I036390	36390999	36391669	1.07	[{'connected_gene': 'ENSG00000255060', 'score': 11.44}, {'connected_gene': 'PRR5L', 'score': 4.68}, {'connected_gene': 'COMMD9', 'score': 1.38}, {'connected_gene': 'ENSG00000255186', 'score': 0.77}]
chr11	GH11I036657	36657112	36657213	0.22	[{'connected_gene': 'GC11M036644', 'score': 550.77}, {'connected_gene': 'PRR5L', 'score': 2.84}, {'connected_gene': 'GC11P036666', 'score': 0.44}, {'connected_gene': 'C11orf74', 'score': 0.21}]
chr11	GH11I036367	36367118	36369430	0.46	[{'connected_gene': 'ENSG00000255060', 'score': 11.24}, {'connected_gene': 'PRR5L', 'score': 9.68}, {'connected_gene': 'GC11P036377', 'score': 0.44}, {'connected_gene': 'PIR61917', 'score': 0.39}]
chr11	GH11I036404	36404583	36404717	0.51	[{'connected_gene': 'ENSG00000255060', 'score': 12.24}, {'connected_gene': 'ENSG00000255186', 'score': 0.37}, {'connected_gene': 'PRR5L', 'score': 0.14}]
chr11	GH11I036308	36308711	36308840	0.2	[{'connected_gene': 'ENSG00000255060', 'score': 10.87}, {'connected_gene': 'ENSG00000254566', 'score': 0.39}, {'connected_gene': 'PRR5L', 'score': 0.39}]
chr11	GH11I036354	36354471	36354620	0.9	[{'connected_gene': 'ENSG00000255060', 'score': 11.52}, {'connected_gene': 'PIR61917', 'score': 0.77}, {'connected_gene': 'ENSG00000254566', 'score': 0.29}, {'connected_gene': 'PRR5L', 'score': 0.22}]
chr11	GH11I036376	36375531	36375680	0.51	[{'connected_gene': 'GC11P036377', 'score': 550.77}, {'connected_gene': 'ENSG00000255060', 'score': 11.25}, {'connected_gene': 'PRR5L', 'score': 9.67}, {'connected_gene': 'PIR61917', 'score': 0.37}]
chr11	GH11I036425	36425461	36426520	0.78	[{'connected_gene': 'ENSG00000255060', 'score': 550.77}, {'connected_gene': 'ENSG00000255186', 'score': 0.28}, {'connected_gene': 'PRR5L', 'score': 0.13}]
chr11	GH11I036355	36355820	36357011	0.77	[{'connected_gene': 'PIR61917', 'score': 550.77}, {'connected_gene': 'ENSG00000255060', 'score': 11.95}, {'connected_gene': 'PRR5L', 'score': 10.74}, {'connected_gene': 'ENSG00000254566', 'score': 0.29}]
chr11	GH11I036300	36300587	36300921	0.31	[{'connected_gene': 'ENSG00000255060', 'score': 10.57}, {'connected_gene': 'PRR5L', 'score': 0.77}, {'connected_gene': 'ENSG00000254566', 'score': 0.34}]
chr11	GH11I036356	36354731	36354940	0.83	[{'connected_gene': 'ENSG00000255060', 'score': 11.52}, {'connected_gene': 'PIR61917', 'score': 0.77}, {'connected_gene': 'ENSG00000254566', 'score': 0.29}, {'connected_gene': 'PRR5L', 'score': 0.22}]
chr11	GH11I036402	36402594	36404417	0.58	[{'connected_gene': 'ENSG00000255060', 'score': 12.41}, {'connected_gene': 'ENSG00000255186', 'score': 0.37}, {'connected_gene': 'PRR5L', 'score': 0.14}]
chr11	GH11I036426	36426571	36426720	0.51	[{'connected_gene': 'ENSG00000255060', 'score': 550.77}, {'connected_gene': 'GC11P036439', 'score': 0.39}, {'connected_gene': 'PRR5L', 'score': 0.12}]
chr11	GH11I036394	36394211	36394340	0.4	[{'connected_gene': 'ENSG00000255060', 'score': 11.99}, {'connected_gene': 'ENSG00000255186', 'score': 0.44}, {'connected_gene': 'PRR5L', 'score': 0.15}]
chr11	GH11I036353	36353031	36353180	0.38	[{'connected_gene': 'ENSG00000255060', 'score': 11.52}, {'connected_gene': 'PIR61917', 'score': 0.77}, {'connected_gene': 'ENSG00000254566', 'score': 0.31}, {'connected_gene': 'PRR5L', 'score': 0.22}]
chr11	GH11I036381	36381466	36384760	0.38	[{'connected_gene': 'ENSG00000255060', 'score': 11.85}, {'connected_gene': 'COMMD9', 'score': 10.33}, {'connected_gene': 'PRR5L', 'score': 10.01}, {'connected_gene': 'ENSG00000255186', 'score': 0.77}, {'connected_gene': 'GC11P036377', 'score': 0.44}]
chr11	GH11I036387	36387616	36387732	0.43	[{'connected_gene': 'ENSG00000255186', 'score': 550.77}, {'connected_gene': 'ENSG00000255060', 'score': 11.87}, {'connected_gene': 'COMMD9', 'score': 10.32}, {'connected_gene': 'PRR5L', 'score': 4.64}]
chr11	GH11I036384	36384772	36386069	1.01	[{'connected_gene': 'ENSG00000255186', 'score': 550.77}, {'connected_gene': 'ENSG00000255060', 'score': 11.85}, {'connected_gene': 'COMMD9', 'score': 10.32}, {'connected_gene': 'TRAF6', 'score': 3.24}, {'connected_gene': 'PRR5L', 'score': 1.33}, {'connected_gene': 'GC11P036377', 'score': 0.44}]
chr11	GH11I036312	36312229	36313400	0.64	[{'connected_gene': 'ENSG00000255060', 'score': 10.95}, {'connected_gene': 'COMMD9', 'score': 10.78}, {'connected_gene': 'RAG1', 'score': 10.04}, {'connected_gene': 'TRAF6', 'score': 10.04}, {'connected_gene': 'RAG2', 'score': 9.58}, {'connected_gene': 'C11orf74', 'score': 9.2}, {'connected_gene': 'ENSG00000254566', 'score': 0.39}, {'connected_gene': 'PRR5L', 'score': 0.37}]