PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000294889	[[220863186, 220864053], [220869953, 220872499]]	[[220863744, 220864053], [220869953, 220870073]]
NM_024709	[[220863627, 220864053], [220869953, 220872499]]	[[220863744, 220864053], [220869953, 220870073]]

Promoter

Chrom	Start	End	Description
chr1	220863632	220863667	CAGE_peak_2_at_C1orf115_5end
chr1	220863682	220863693	CAGE_peak_3_at_C1orf115_5end
chr1	220863696	220863752	CAGE_peak_1_at_C1orf115_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I220732	220732247	220735257	1.16	[{'connected_gene': 'C1orf115', 'score': 32.19}, {'connected_gene': 'MARC1', 'score': 6.05}, {'connected_gene': 'MARC2', 'score': 0.39}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220766	220766297	220769823	1.09	[{'connected_gene': 'C1orf115', 'score': 22.38}, {'connected_gene': 'MARC1', 'score': 12.79}, {'connected_gene': 'MARC2', 'score': 4.83}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220689	220689719	220692566	2.2	[{'connected_gene': 'C1orf115', 'score': 572.15}, {'connected_gene': 'MARC1', 'score': 6.46}, {'connected_gene': 'MARC2', 'score': 0.22}, {'connected_gene': 'GC01M220652', 'score': 0.04}]
chr1	GH01I220760	220760842	220763436	0.59	[{'connected_gene': 'C1orf115', 'score': 18.66}, {'connected_gene': 'MARC1', 'score': 10.3}, {'connected_gene': 'MARC2', 'score': 4.49}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220777	220777801	220778800	0.2	[{'connected_gene': 'C1orf115', 'score': 23.45}, {'connected_gene': 'MARC2', 'score': 12.03}, {'connected_gene': 'MARC1', 'score': 0.44}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220711	220711559	220711648	0.62	[{'connected_gene': 'C1orf115', 'score': 12.53}, {'connected_gene': 'MARC2', 'score': 0.28}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220709	220709139	220709288	0.38	[{'connected_gene': 'C1orf115', 'score': 10.45}, {'connected_gene': 'MARC2', 'score': 0.28}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220514	220514795	220517324	0.2	[{'connected_gene': 'C1orf115', 'score': 9.11}, {'connected_gene': 'MARK1', 'score': 5.51}, {'connected_gene': 'LOC105372928', 'score': 0.31}]
chr1	GH01I220770	220770133	220771037	0.59	[{'connected_gene': 'MARC1', 'score': 16.0}, {'connected_gene': 'C1orf115', 'score': 11.37}, {'connected_gene': 'MARC2', 'score': 0.34}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220785	220785515	220789424	2	[{'connected_gene': 'MARC1', 'score': 566.72}, {'connected_gene': 'C1orf115', 'score': 8.59}, {'connected_gene': 'RNU6ATAC35P', 'score': 0.28}, {'connected_gene': 'GC01M220652', 'score': 0.06}]
chr1	GH01I220695	220695459	220695520	0.25	[{'connected_gene': 'MARC2', 'score': 16.71}, {'connected_gene': 'C1orf115', 'score': 12.97}, {'connected_gene': 'MARC1', 'score': 1.46}, {'connected_gene': 'GC01M220652', 'score': 0.04}]
chr1	GH01I220746	220746754	220751987	2.18	[{'connected_gene': 'MARC2', 'score': 550.77}, {'connected_gene': 'C1orf115', 'score': 11.2}, {'connected_gene': 'MARC1', 'score': 9.35}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220698	220698779	220698928	0.77	[{'connected_gene': 'MARC2', 'score': 10.31}, {'connected_gene': 'C1orf115', 'score': 0.44}, {'connected_gene': 'GC01M220652', 'score': 0.05}]
chr1	GH01I220483	220483349	220485025	0.43	[{'connected_gene': 'MARK1', 'score': 6.79}, {'connected_gene': 'C1orf115', 'score': 4.08}, {'connected_gene': 'LOC105372929', 'score': 0.77}, {'connected_gene': 'PIR56189', 'score': 0.44}]
chr1	GH01I220527	220527129	220530158	1.95	[{'connected_gene': 'MARK1', 'score': 550.77}, {'connected_gene': 'RAB3GAP2', 'score': 14.1}, {'connected_gene': 'RPS15AP12', 'score': 12.32}, {'connected_gene': 'C1orf115', 'score': 7.88}, {'connected_gene': 'GC01P220568', 'score': 0.28}]
chr1	GH01I221435	221435099	221436000	0.96	[{'connected_gene': 'HLX', 'score': 10.95}, {'connected_gene': 'C1orf115', 'score': 4.84}, {'connected_gene': 'PIR33032', 'score': 0.31}, {'connected_gene': 'LOC105372934', 'score': 0.2}]
chr1	GH01I220336	220336094	220339871	1.08	[{'connected_gene': 'RAB3GAP2', 'score': 10.03}, {'connected_gene': 'C1orf115', 'score': 9.37}, {'connected_gene': 'RPLP0P5', 'score': 0.34}, {'connected_gene': 'ENSG00000226927', 'score': 0.34}, {'connected_gene': 'GC01P220287', 'score': 0.23}]
chr1	GH01I220274	220274228	220274935	0.96	[{'connected_gene': 'RPS15AP12', 'score': 10.59}, {'connected_gene': 'C1orf115', 'score': 9.15}, {'connected_gene': 'RAB3GAP2', 'score': 0.77}, {'connected_gene': 'GC01P220287', 'score': 0.39}]
chr1	GH01I220218	220218779	220218928	0.64	[{'connected_gene': 'ENSG00000270708', 'score': 550.77}, {'connected_gene': 'RAB3GAP2', 'score': 11.35}, {'connected_gene': 'C1orf115', 'score': 8.65}, {'connected_gene': 'ENSG00000272823', 'score': 4.9}, {'connected_gene': 'SNX2P1', 'score': 0.39}]
chr1	GH01I220299	220299926	220301477	1.19	[{'connected_gene': 'GC01M220298', 'score': 550.77}, {'connected_gene': 'RAB3GAP2', 'score': 21.77}, {'connected_gene': 'RPS15AP12', 'score': 21.62}, {'connected_gene': 'SNX2P1', 'score': 9.94}, {'connected_gene': 'C1orf115', 'score': 9.73}, {'connected_gene': 'GC01P220287', 'score': 0.39}, {'connected_gene': 'XRCC6P3', 'score': 0.37}]