PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375011	[[101569980, 101570351], [101585537, 101585707], [101589033, 101589223], [101594053, 101594239], [101597530, 101597648], [101599253, 101599430], [101602283, 101602415], [101606377, 101606491], [101608258, 101608405], [101611233, 101612363]]	[[101569980, 101570351], [101585537, 101585707], [101589033, 101589223], [101594053, 101594239], [101597530, 101597648], [101599253, 101599430], [101602283, 101602415], [101606377, 101606491], [101608258, 101608405], [101611233, 101611374]]
ENST00000470473	[[101611053, 101611142], [101611233, 101611916]]	None
NM_024642	[[101569980, 101570351], [101585537, 101585707], [101589033, 101589223], [101594053, 101594239], [101597530, 101597648], [101599253, 101599430], [101602283, 101602415], [101606377, 101606491], [101608258, 101608405], [101611233, 101612363]]	[[101569980, 101570351], [101585537, 101585707], [101589033, 101589223], [101594053, 101594239], [101597530, 101597648], [101599253, 101599430], [101602283, 101602415], [101606377, 101606491], [101608258, 101608405], [101611233, 101611374]]

Promoter

Chrom	Start	End	Description
chr9	101569914	101569942	CAGE_peak_2_at_GALNT12_5end
chr9	101569944	101569973	CAGE_peak_1_at_GALNT12_5end
chr9	101611053	101611084	CAGE_peak_5_at_GALNT12_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I098750	98750201	98750800	0.2	[{'connected_gene': 'GALNT12', 'score': 10.5}, {'connected_gene': 'ANKS6', 'score': 6.32}, {'connected_gene': 'GABBR2', 'score': 0.26}]
chr9	GH09I098806	98806635	98811689	2.4	[{'connected_gene': 'GALNT12', 'score': 552.8}, {'connected_gene': 'ANKS6', 'score': 14.64}, {'connected_gene': 'GC09P098862', 'score': 0.23}]
chr9	GH09I098805	98805416	98806289	0.77	[{'connected_gene': 'GALNT12', 'score': 550.77}, {'connected_gene': 'ANKS6', 'score': 11.89}]
chr9	GH09I098848	98848069	98849304	1.35	[{'connected_gene': 'GALNT12', 'score': 10.85}, {'connected_gene': 'COL15A1', 'score': 10.79}, {'connected_gene': 'GC09P098862', 'score': 0.39}, {'connected_gene': 'LOC102724684', 'score': 0.31}]
chr9	GH09I098930	98929219	98929368	0.57	[{'connected_gene': 'GALNT12', 'score': 10.18}, {'connected_gene': 'COL15A1', 'score': 0.39}, {'connected_gene': 'LOC100288125', 'score': 0.28}]
chr9	GH09I098833	98833299	98833448	0.94	[{'connected_gene': 'GALNT12', 'score': 0.31}, {'connected_gene': 'GC09P098862', 'score': 0.31}]
chr9	GH09I098834	98834599	98834748	0.46	[{'connected_gene': 'GALNT12', 'score': 0.31}, {'connected_gene': 'GC09P098862', 'score': 0.31}]
chr9	GH09I099102	99102913	99108094	2.18	[{'connected_gene': 'TGFBR1', 'score': 559.61}, {'connected_gene': 'INVS', 'score': 10.07}, {'connected_gene': 'GALNT12', 'score': 4.66}, {'connected_gene': 'GC09M099146', 'score': 0.26}, {'connected_gene': 'RNA5SP290', 'score': 0.26}]
chr9	GH09I098878	98878466	98880994	0.63	[{'connected_gene': 'COL15A1', 'score': 18.49}, {'connected_gene': 'GALNT12', 'score': 10.32}, {'connected_gene': 'TRIM14', 'score': 4.24}, {'connected_gene': 'LOC102724684', 'score': 0.77}, {'connected_gene': 'LOC100288125', 'score': 0.39}]
chr9	GH09I098987	98987951	98990875	1.06	[{'connected_gene': 'COL15A1', 'score': 16.59}, {'connected_gene': 'GALNT12', 'score': 10.21}, {'connected_gene': 'ENSG00000270412', 'score': 4.37}, {'connected_gene': 'TGFBR1', 'score': 0.14}]
chr9	GH09I098905	98905727	98910418	1.15	[{'connected_gene': 'COL15A1', 'score': 18.3}, {'connected_gene': 'GALNT12', 'score': 10.26}, {'connected_gene': 'TRMO', 'score': 4.55}, {'connected_gene': 'LOC100288125', 'score': 0.37}]
chr9	GH09I098882	98882000	98882401	0.4	[{'connected_gene': 'COL15A1', 'score': 10.94}, {'connected_gene': 'GALNT12', 'score': 10.32}, {'connected_gene': 'LOC102724684', 'score': 0.77}, {'connected_gene': 'LOC100288125', 'score': 0.44}]
chr9	GH09I098923	98923239	98926728	0.69	[{'connected_gene': 'COL15A1', 'score': 21.41}, {'connected_gene': 'GALNT12', 'score': 10.18}, {'connected_gene': 'LOC100288125', 'score': 0.29}]
chr9	GH09I098916	98916385	98918404	1.16	[{'connected_gene': 'COL15A1', 'score': 11.81}, {'connected_gene': 'GALNT12', 'score': 10.0}, {'connected_gene': 'LOC100288125', 'score': 0.31}]
chr9	GH09I098904	98904079	98904228	0.52	[{'connected_gene': 'COL15A1', 'score': 11.38}, {'connected_gene': 'GALNT12', 'score': 10.27}, {'connected_gene': 'LOC100288125', 'score': 0.39}]
chr9	GH09I098899	98899533	98899796	0.51	[{'connected_gene': 'COL15A1', 'score': 19.28}, {'connected_gene': 'GALNT12', 'score': 10.27}, {'connected_gene': 'LOC100288125', 'score': 0.44}]
chr9	GH09I098910	98910552	98911267	0.4	[{'connected_gene': 'COL15A1', 'score': 11.56}, {'connected_gene': 'GALNT12', 'score': 5.34}, {'connected_gene': 'LOC100288125', 'score': 0.34}]
chr9	GH09I098929	98929418	98931092	0.86	[{'connected_gene': 'COL15A1', 'score': 24.3}, {'connected_gene': 'GALNT12', 'score': 10.18}, {'connected_gene': 'LOC100288125', 'score': 0.28}]
chr9	GH09I098850	98850241	98852914	0.92	[{'connected_gene': 'COL15A1', 'score': 10.79}, {'connected_gene': 'GC09P098862', 'score': 0.39}, {'connected_gene': 'LOC102724684', 'score': 0.31}, {'connected_gene': 'GALNT12', 'score': 0.26}]
chr9	GH09I098876	98876940	98877979	0.4	[{'connected_gene': 'LOC102724684', 'score': 550.77}, {'connected_gene': 'COL15A1', 'score': 15.08}, {'connected_gene': 'GALNT12', 'score': 10.33}, {'connected_gene': 'TRIM14', 'score': 4.21}, {'connected_gene': 'LOC100288125', 'score': 0.39}]