PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr15	60771268	60771277	CAGE_peak_2_at_NARG2_5end
chr15	60771280	60771351	CAGE_peak_1_at_NARG2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I059586	59586937	59588218	0.77	[{'connected_gene': 'ICE2', 'score': 39.0}, {'connected_gene': 'SLTM', 'score': 23.72}, {'connected_gene': 'MINDY2', 'score': 21.06}, {'connected_gene': 'RPS3AP6', 'score': 20.16}, {'connected_gene': 'GC15M059584', 'score': 0.44}, {'connected_gene': 'GCNT3', 'score': 0.44}, {'connected_gene': 'GC15M059575', 'score': 0.39}]
chr15	GH15I061038	61038542	61038691	0.8	[{'connected_gene': 'ICE2', 'score': 38.02}, {'connected_gene': 'PIR44161', 'score': 0.39}, {'connected_gene': 'GC15M061038', 'score': 0.34}, {'connected_gene': 'GC15M060908', 'score': 0.13}, {'connected_gene': 'RORA', 'score': 0.08}]
chr15	GH15I060554	60554419	60555552	0.31	[{'connected_gene': 'ICE2', 'score': 4.82}, {'connected_gene': 'CYCSP38', 'score': 0.77}, {'connected_gene': 'PIR43643', 'score': 0.34}, {'connected_gene': 'RORA-AS1', 'score': 0.18}, {'connected_gene': 'RORA', 'score': 0.03}]
chr15	GH15I060535	60535809	60537744	0.38	[{'connected_gene': 'ICE2', 'score': 4.97}, {'connected_gene': 'PIR43643', 'score': 0.77}, {'connected_gene': 'ENSG00000259274', 'score': 0.44}, {'connected_gene': 'CYCSP38', 'score': 0.34}, {'connected_gene': 'RORA-AS1', 'score': 0.22}, {'connected_gene': 'RORA', 'score': 0.03}]
chr15	GH15I059996	59996634	59997773	1.02	[{'connected_gene': 'ICE2', 'score': 12.69}, {'connected_gene': 'RPS3AP6', 'score': 11.33}, {'connected_gene': 'FOXB1', 'score': 0.44}, {'connected_gene': 'NMNAT1P5', 'score': 0.29}, {'connected_gene': 'GC15M059893', 'score': 0.23}]
chr15	GH15I060020	60020842	60020971	0.38	[{'connected_gene': 'ICE2', 'score': 20.22}, {'connected_gene': 'RPS3AP6', 'score': 13.28}, {'connected_gene': 'LOC105370838', 'score': 0.44}, {'connected_gene': 'FOXB1', 'score': 0.37}, {'connected_gene': 'GC15M059893', 'score': 0.31}]
chr15	GH15I060476	60476303	60480551	2.09	[{'connected_gene': 'ICE2', 'score': 566.94}, {'connected_gene': 'RORA-AS1', 'score': 550.77}, {'connected_gene': 'BNIP2', 'score': 14.78}, {'connected_gene': 'ANXA2', 'score': 14.18}, {'connected_gene': 'RPS3AP6', 'score': 11.17}, {'connected_gene': 'PIGHP1', 'score': 9.88}, {'connected_gene': 'GC15M060398', 'score': 0.21}]
chr15	GH15I060500	60500484	60501926	0.2	[{'connected_gene': 'ICE2', 'score': 12.74}, {'connected_gene': 'RORA-AS1', 'score': 12.74}, {'connected_gene': 'PIR42657', 'score': 0.44}, {'connected_gene': 'GC15P060512', 'score': 0.39}, {'connected_gene': 'RORA', 'score': 0.03}]
chr15	GH15I060504	60504536	60506628	0.38	[{'connected_gene': 'ICE2', 'score': 7.54}, {'connected_gene': 'GC15P060512', 'score': 0.44}, {'connected_gene': 'PIR42657', 'score': 0.44}, {'connected_gene': 'RORA-AS1', 'score': 0.31}, {'connected_gene': 'RORA', 'score': 0.03}]
chr15	GH15I060521	60521390	60522776	0.31	[{'connected_gene': 'ICE2', 'score': 5.24}, {'connected_gene': 'GC15P060525', 'score': 0.77}, {'connected_gene': 'GC15P060512', 'score': 0.44}, {'connected_gene': 'RORA-AS1', 'score': 0.26}, {'connected_gene': 'RORA', 'score': 0.03}]
chr15	GH15I060420	60420133	60425096	1.18	[{'connected_gene': 'ICE2', 'score': 6.85}, {'connected_gene': 'RORA-AS1', 'score': 6.24}, {'connected_gene': 'GC15M060398', 'score': 0.77}]
chr15	GH15I060412	60412950	60414718	1.04	[{'connected_gene': 'ICE2', 'score': 7.74}, {'connected_gene': 'GC15M060398', 'score': 0.77}, {'connected_gene': 'ENSG00000273721', 'score': 0.77}]
chr15	GH15I060465	60465603	60465770	0.39	[{'connected_gene': 'ICE2', 'score': 0.39}, {'connected_gene': 'GC15M060398', 'score': 0.25}]
chr15	GH15I060458	60458601	60458800	0.2	[{'connected_gene': 'ICE2', 'score': 0.34}, {'connected_gene': 'GC15M060398', 'score': 0.26}]
chr15	GH15I060538	60538680	60554161	1.29	[{'connected_gene': 'RORA', 'score': 23.5}, {'connected_gene': 'ICE2', 'score': 5.69}, {'connected_gene': 'CYCSP38', 'score': 0.39}, {'connected_gene': 'PIR43643', 'score': 0.39}, {'connected_gene': 'ENSG00000259274', 'score': 0.37}, {'connected_gene': 'RORA-AS1', 'score': 0.2}]
chr15	GH15I060388	60388284	60403680	2.52	[{'connected_gene': 'ANXA2', 'score': 550.44}, {'connected_gene': 'ICE2', 'score': 37.0}, {'connected_gene': 'RPS3AP6', 'score': 21.27}, {'connected_gene': 'RPL36AP44', 'score': 9.43}, {'connected_gene': 'RORA-AS1', 'score': 4.97}, {'connected_gene': 'GC15P060391', 'score': 0.44}, {'connected_gene': 'GC15M060398', 'score': 0.34}]
chr15	GH15I060523	60523142	60523291	0.58	[{'connected_gene': 'ANXA2', 'score': 10.77}, {'connected_gene': 'ICE2', 'score': 5.06}, {'connected_gene': 'GC15P060525', 'score': 0.77}, {'connected_gene': 'GC15P060512', 'score': 0.39}, {'connected_gene': 'RORA-AS1', 'score': 0.26}, {'connected_gene': 'RORA', 'score': 0.03}]
chr15	GH15I060358	60358556	60365772	1.2	[{'connected_gene': 'ANXA2', 'score': 17.72}, {'connected_gene': 'ICE2', 'score': 12.0}, {'connected_gene': 'RORA-AS1', 'score': 12.0}, {'connected_gene': 'PIR58768', 'score': 0.37}, {'connected_gene': 'GC15M060303', 'score': 0.37}]
chr15	GH15I060440	60440822	60444116	0.43	[{'connected_gene': 'ANXA2', 'score': 11.41}, {'connected_gene': 'ICE2', 'score': 7.43}, {'connected_gene': 'GC15M060398', 'score': 0.34}]
chr15	GH15I060425	60425349	60426408	0.31	[{'connected_gene': 'ANXA2', 'score': 12.65}, {'connected_gene': 'ICE2', 'score': 6.57}, {'connected_gene': 'GC15M060398', 'score': 0.44}]
chr15	GH15I060448	60448745	60450079	0.38	[{'connected_gene': 'ANXA2', 'score': 11.99}, {'connected_gene': 'ICE2', 'score': 7.48}, {'connected_gene': 'GC15M060398', 'score': 0.29}]
chr15	GH15I059656	59656011	59658229	2.01	[{'connected_gene': 'GTF2A2', 'score': 573.66}, {'connected_gene': 'SLTM', 'score': 14.35}, {'connected_gene': 'ICE2', 'score': 12.68}, {'connected_gene': 'RPS3AP6', 'score': 11.4}, {'connected_gene': 'GC15M059646', 'score': 0.77}, {'connected_gene': 'ENSG00000227161', 'score': 0.37}]
chr15	GH15I060760	60760581	60762134	0.56	[{'connected_gene': 'LOC105370844', 'score': 550.77}, {'connected_gene': 'ICE2', 'score': 13.68}, {'connected_gene': 'RNA5SP397', 'score': 0.34}, {'connected_gene': 'RORA', 'score': 0.04}]
chr15	GH15I060527	60527889	60529266	0.69	[{'connected_gene': 'ENSG00000259274', 'score': 550.77}, {'connected_gene': 'ICE2', 'score': 5.81}, {'connected_gene': 'GC15P060525', 'score': 0.77}, {'connected_gene': 'GC15P060512', 'score': 0.37}, {'connected_gene': 'RORA-AS1', 'score': 0.25}, {'connected_gene': 'RORA', 'score': 0.03}]
chr15	GH15I060406	60406433	60410108	1.44	[{'connected_gene': 'ENSG00000273721', 'score': 550.77}, {'connected_gene': 'ICE2', 'score': 7.39}, {'connected_gene': 'GC15P060405', 'score': 0.77}, {'connected_gene': 'GC15M060398', 'score': 0.44}]
chr15	GH15I060426	60426704	60427911	0.83	[{'connected_gene': 'GC15M060398', 'score': 0.44}, {'connected_gene': 'ICE2', 'score': 0.23}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000261520	[[60711807, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770268], [60771201, 60771344]]	[[60715832, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770176]]
ENST00000439632	[[60711807, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760361], [60768261, 60768366], [60770135, 60770268], [60771201, 60771344]]	[[60715832, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758909]]
ENST00000558181	[[60711811, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760361], [60768261, 60768366], [60770135, 60770268], [60771201, 60771359]]	[[60760285, 60760361], [60768261, 60768366], [60770135, 60770176]]
ENST00000558121	[[60713674, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60735270]]	None
ENST00000561124	[[60715850, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60732829, 60732867]]	None
ENST00000561328	[[60730018, 60734744], [60741046, 60742040], [60745801, 60745982]]	None
ENST00000561144	[[60739689, 60740344], [60741046, 60741150]]	None
ENST00000561114	[[60743293, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770268], [60771201, 60771272]]	[[60745774, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770176]]
ENST00000558512	[[60745910, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770268], [60770766, 60771128]]	[[60745910, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770176]]
ENST00000558451	[[60746886, 60747361], [60747524, 60747641]]	None
ENST00000560895	[[60747554, 60747641], [60748855, 60748993], [60768261, 60768366], [60770135, 60770268], [60771201, 60771309]]	[[60748983, 60748993], [60768261, 60768366], [60770135, 60770176]]
ENST00000561446	[[60748864, 60748993], [60758792, 60758912], [60760259, 60760361], [60768261, 60768366], [60771201, 60771309]]	[[60760285, 60760361], [60768261, 60768366], [60771201, 60771206]]
ENST00000560668	[[60748959, 60748993], [60758792, 60758912], [60760259, 60760361], [60768261, 60768366], [60770135, 60770268], [60771270, 60771331]]	[[60760285, 60760361], [60768261, 60768366], [60770135, 60770176]]
ENST00000561087	[[60748963, 60748993], [60758792, 60758912], [60760259, 60760361], [60768261, 60768366], [60770766, 60770849], [60771201, 60771306]]	None
ENST00000558654	[[60758871, 60758912], [60760259, 60760361], [60768261, 60768366], [60770135, 60770268], [60770766, 60770836], [60771201, 60771311]]	None
ENST00000560072	[[60758885, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770268], [60771270, 60771302]]	[[60758885, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770176]]
ENST00000560406	[[60760369, 60760521], [60768261, 60768366], [60770135, 60770268], [60770766, 60770859], [60771201, 60771302]]	[[60760369, 60760521], [60768261, 60768366], [60770135, 60770176]]
ENST00000560520	[[60760385, 60760521], [60768261, 60768366], [60770135, 60770268], [60770766, 60770849], [60771201, 60771312]]	[[60760385, 60760521], [60768261, 60768366], [60770135, 60770176]]
NM_024611	[[60711807, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770268], [60771201, 60771359]]	[[60715832, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770176]]
NM_001018089	[[60711807, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760361], [60768261, 60768366], [60770135, 60770268], [60771201, 60771359]]	[[60715832, 60715961], [60720627, 60720886], [60724132, 60724183], [60728341, 60728426], [60734614, 60734744], [60740168, 60740344], [60741046, 60742040], [60745801, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758909]]
NM_001276385	[[60743293, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770268], [60771201, 60771359]]	[[60745774, 60745983], [60747201, 60747361], [60747524, 60747641], [60748855, 60748993], [60758792, 60758912], [60760259, 60760521], [60768261, 60768366], [60770135, 60770176]]