PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000282003	[[79188425, 79191257], [79209244, 79209333], [79212957, 79213206], [79216256, 79216348], [79218996, 79219132], [79233183, 79233314]]	[[79189714, 79191257], [79209244, 79209333], [79212957, 79213206], [79216256, 79216348], [79218996, 79219132], [79233183, 79233255]]
NM_024546	[[79188420, 79191257], [79209244, 79209333], [79212957, 79213206], [79216256, 79216348], [79218996, 79219132], [79233183, 79233314]]	[[79189714, 79191257], [79209244, 79209333], [79212957, 79213206], [79216256, 79216348], [79218996, 79219132], [79233183, 79233255]]

Promoter

Chrom	Start	End	Description
chr13	79233259	79233309	CAGE_peak_1_at_RNF219_5end
chr13	79233314	79233331	CAGE_peak_2_at_RNF219_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I078657	78657707	78660679	2.02	[{'connected_gene': 'RNF219', 'score': 550.77}, {'connected_gene': 'RBM26', 'score': 11.89}, {'connected_gene': 'ENSG00000271776', 'score': 11.79}, {'connected_gene': 'POU4F1', 'score': 7.96}, {'connected_gene': 'GC13P078744', 'score': 0.17}]
chr13	GH13I078986	78986926	78987144	0.4	[{'connected_gene': 'RNF219', 'score': 5.42}, {'connected_gene': 'LOC105370273', 'score': 0.77}, {'connected_gene': 'GC13M078992', 'score': 0.39}]
chr13	GH13I079496	79496898	79498311	0.46	[{'connected_gene': 'RBM26', 'score': 13.56}, {'connected_gene': 'RNF219', 'score': 10.12}, {'connected_gene': 'NDFIP2-AS1', 'score': 0.37}, {'connected_gene': 'NDFIP2', 'score': 0.37}, {'connected_gene': 'LINC01068', 'score': 0.2}]
chr13	GH13I078646	78646177	78648141	0.95	[{'connected_gene': 'POU4F1', 'score': 11.12}, {'connected_gene': 'ENSG00000271776', 'score': 10.2}, {'connected_gene': 'GC13P078650', 'score': 0.77}, {'connected_gene': 'GC13M078632', 'score': 0.44}, {'connected_gene': 'RNF219', 'score': 0.39}]
chr13	GH13I078421	78421967	78422277	0.22	[{'connected_gene': 'RPL31P54', 'score': 550.77}, {'connected_gene': 'RNF219', 'score': 1.32}, {'connected_gene': 'GC13M078419', 'score': 0.39}, {'connected_gene': 'RNY3P3', 'score': 0.2}, {'connected_gene': 'GC13M078356', 'score': 0.2}, {'connected_gene': 'RNF219-AS1', 'score': 0.03}]
chr13	GH13I078732	78732555	78732968	0.31	[{'connected_gene': 'GC13P078744', 'score': 0.39}, {'connected_gene': 'RNF219', 'score': 0.19}]
chr13	GH13I078664	78664373	78664821	0.56	[{'connected_gene': 'ENSG00000271776', 'score': 12.1}, {'connected_gene': 'RNF219', 'score': 0.44}, {'connected_gene': 'GC13P078744', 'score': 0.18}]