PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
VHL	0	HNRNPL	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Lai Y (2011), Yao P (2013), Yao P (2013)	3
SIN3A	13	SAP30	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, affinity chromatography technology	Fleischer TC (2003), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1999), Yochum GS (2001), Kuzmichev A (2002), Kuzmichev A (2002), Kuzmichev A (2002), Laherty CD (1998), Viiri KM (2006), Viiri KM (2006), Nakamura T (2002), Lai A (2001), Skowyra D (2001), Zhang Y (1998), Zhang Y (1998), Xie T (2011), Xie T (2011), Bantscheff M (2011), Hein MY (2015)	21
COPS5	0	HNRNPL	3	affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Fei T (2017)	2
SAP30	1	FOXK1	5	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Li X (2015)	2
TFAP4	3	HDAC1	4	affinity chromatography technology, affinity chromatography technology	Ku WC (2009), Ku WC (2009)	2
GATAD1	0	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vermeulen M (2010), Hein MY (2015), Varier RA (2016)	3
SIN3B	5	SIN3A	13	affinity chromatography technology	Hein MY (2015)	1
HDAC1	4	GATAD1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Vermeulen M (2010), Hein MY (2015), Varier RA (2016), Huttlin EL (2017)	5
SUPT3H	4	DDB1	6	affinity chromatography technology, affinity chromatography technology, pull down	Martinez E (2001), Martinez E (2001), Martinez E (2001)	3
TFAP4	3	SIN3A	13	affinity chromatography technology	Huttlin EL (2017)	1
SOX2	4	RBBP7	1	affinity chromatography technology	Engelen E (2011)	1
SAP130	2	SUDS3	3	affinity chromatography technology	Fleischer TC (2003)	1
CUL4B	8	SIN3A	13	affinity chromatography technology, affinity chromatography technology, pull down, biochemical	Ji Q (2014), Ji Q (2014), Ji Q (2014), Ji Q (2014)	4
SINHCAF	0	HDAC2	1	affinity chromatography technology	Huttlin EL (2017)	1
SIN3A	13	HBP1	1	two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, x-ray crystallography, affinity chromatography technology, affinity chromatography technology	Swanson KA (2004), Swanson KA (2004), Swanson KA (2004), Swanson KA (2004), Swanson KA (2004), Lampert F (2018), Lampert F (2018)	7
MYC	2	CUL1	7	affinity chromatography technology	von der Lehr N (2003)	1
CUL4B	8	DDB1	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Guerrero-Santoro J (2008), Guerrero-Santoro J (2008), Angers S (2006), Jin J (2006), Wang H (2006), Higa LA (2006), Higa LA (2006), Kawajiri K (2009), Bennett EJ (2010), Havugimana PC (2012), Ji Q (2014), Wan C (2015), Hein MY (2015), Mo Y (2017), Mo Y (2017), Yang Y (2015), Yang Y (2015), Yang Y (2015), Higa LA (2006), Higa LA (2006), Ohtake F (2007), Ohtake F (2007), Ohtake F (2007)	23
CUL1	7	SF3B1	12	affinity chromatography technology	Bennett EJ (2010)	1
SAP130	2	SF3B1	12	affinity chromatography technology	Menon S (2008)	1
SUPT3H	4	SAP130	2	affinity chromatography technology	Holmlund T (2012)	1
SYN1	1	SAP130	2	affinity chromatography technology	Hein MY (2015)	1
SMAD3	1	SAP130	2	two hybrid	Colland F (2004)	1
MXD1	2	SAP130	2	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
MXD3	1	MAX	0	two hybrid, two hybrid, two hybrid, pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Billin AN (1999), Gupta K (1998), Meroni G (1997), FitzGerald MJ (1999), Meroni G (2000), Huttlin EL (2017), Cheng J (2017), Hauri S (2016)	8
FOXK1	5	HDAC2	1	affinity chromatography technology	Li X (2015)	1
RBBP7	1	SUDS3	3	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
HBP1	1	SINHCAF	0	affinity chromatography technology	Lampert F (2018)	1
HDAC1	4	SIN3B	5	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (1999), Koipally J (1999), Romm E (2005), Humphrey GW (2001), Terhune SS (2010), Joshi P (2013), Wan C (2015), Hein MY (2015), Hein MY (2015), Huttlin EL (2017)	10
SAP25	1	SIN3A	13	pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Shiio Y (2006), Shiio Y (2006), Shiio Y (2006), Shiio Y (2006), Shiio Y (2006)	5
NANOG	0	SAP130	2	affinity chromatography technology	Oliviero G (2015)	1
SUPT3H	4	TAF10	0	affinity chromatography technology, affinity chromatography technology, biochemical	Brand M (2001), Martinez E (2001), Demeny MA (2007)	3
SAP130	2	CUL4A	2	affinity chromatography technology	Menon S (2008)	1
GATAD1	0	SIN3B	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vermeulen M (2010), Hein MY (2015), Hein MY (2015), Varier RA (2016)	4
SAP30	1	SAP130	2	affinity chromatography technology	Hein MY (2015)	1
ARID4B	1	SAP30	1	biochemical, affinity chromatography technology	Wan C (2015), Hein MY (2015)	2
SOX2	4	SIN3B	5	affinity chromatography technology	Cox JL (2013)	1
ING2	0	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Doyon Y (2006), Doyon Y (2006), Huttlin EL (2015), Huttlin EL (2017)	4
MYC	2	SF3B1	12	two hybrid	Bandyopadhyay S (2010)	1
ZNF704	2	ARID4B	1	affinity chromatography technology	Huttlin EL (2017)	1
PHF23	3	SIN3A	13	affinity chromatography technology	Huttlin EL (2017)	1
COPS5	0	GPS1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Sowa ME (2009), Stotland A (2012), Bennett EJ (2010), Oh W (2006), Chun Y (2013), Chun Y (2013), Chun Y (2013), Lingaraju GM (2014), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	11
MYC	2	SAP130	2	pull down	Liu X (2003)	1
SOX2	4	HDAC2	1	affinity chromatography technology	Engelen E (2011)	1
HDAC1	4	SIN3A	13	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (2003), Yao YL (2003), Yao YL (2003), Fleischer TC (2003), Fleischer TC (2003), Yang L (2003), Grozinger CM (1999), Zhang J (2002), Zhang J (2002), You A (2001), Zhang Y (1999), Zhang Y (2002), Tong JK (1998), Hassig CA (1998), Yasui D (2002), Huang EY (2000), Huang EY (2000), Kuzmichev A (2002), Kuzmichev A (2002), Martinowich K (2003), Martinowich K (2003), Suzuki M (2003), Suzuki M (2006), Nakamura T (2002), Wei Q (2005), Pflum MK (2001), Pflum MK (2001), Skowyra D (2001), Skowyra D (2001), Humphrey GW (2001), Sekhavat A (2007), Zhang Y (1998), Zhang Y (1998), Sun JM (2007), Karwowska-Desaulniers P (2007), Terhune SS (2010), Xue Y (1998), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Oh YM (2009), Wan C (2015), Hein MY (2015), Hsu DS (2014), Huttlin EL (2017)	45
TAF10	0	SAP130	2	biochemical, biochemical	Demeny MA (2007), Havugimana PC (2012)	2
CUL4B	8	HDAC2	1	affinity chromatography technology, affinity chromatography technology, biochemical	Ji Q (2014), Ji Q (2014), Ji Q (2014)	3
COPS5	0	CUL1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Min KW (2005), Min KW (2005), Chua YS (2011), Boh BK (2011), Emberley ED (2012), Emberley ED (2012), Choo YY (2011), Choo YY (2011), Bennett EJ (2010), Bennett EJ (2010), Bennett EJ (2010), Gastaldello S (2012), Enchev RI (2012), Birol M (2014), Pick E (2012), Sharon M (2009), Enchev RI (2012), Bornstein G (2015), Rockel B (2014), Schlierf A (2016), Reitsma JM (2017), Reitsma JM (2017)	23
H3F3A	1	SAP130	2	affinity chromatography technology	Heo K (2007)	1
ARID4B	1	SUDS3	3	affinity chromatography technology	Fleischer TC (2003)	1
SAP25	1	SAP30	1	affinity chromatography technology	Shiio Y (2006)	1
MXD3	1	SAP30	1	affinity chromatography technology	Huttlin EL (2017)	1
HNRNPL	3	FOXK2	9	affinity chromatography technology	Fei T (2017)	1
MAX	0	FOXK1	5	affinity chromatography technology	Li X (2015)	1
FOXK2	9	SIN3B	5	affinity chromatography technology	Li X (2015)	1
SIN3B	5	SAP130	2	affinity chromatography technology	Hein MY (2015)	1
H3F3A	1	SF3B1	12	affinity chromatography technology	Heo K (2007)	1
SINHCAF	0	FOXK2	9	affinity chromatography technology	Huttlin EL (2017)	1
MYC	2	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Koch HB (2007), Hwang IY (2012)	2
HDAC1	4	SINHCAF	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	3
FOXK2	9	SF3B1	12	affinity chromatography technology	Li X (2015)	1
HDAC1	4	HDAC2	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, imaging technique, affinity chromatography technology	Hakimi MA (2002), Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Fischle W (2002), Johnson CA (2002), Fischle W (2001), Fischer DD (2002), Fischer DD (2002), Ashburner BP (2001), Zhang Y (1999), Tong JK (1998), Tong JK (1998), Hassig CA (1998), Hassig CA (1998), Zhang Y (1997), van der Vlag J (1999), van der Vlag J (1999), Noh EJ (2009), Noh EJ (2009), Galasinski SC (2002), Galasinski SC (2002), Galasinski SC (2002), He S (2005), Humphrey GW (2001), Park JH (2004), Park JH (2004), Sekhavat A (2007), Zhang Y (1998), Zhang Y (1998), Adenuga D (2010), Xue Y (1998), Xue Y (1998), Martinez FP (2012), Martinez FP (2012), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Joshi P (2013), Schnur N (2007), Schnur N (2007), Oh YM (2009), Wan C (2015), Hein MY (2015), Chen TC (2014), Huttlin EL (2017)	48
ING2	0	ARID4B	1	affinity chromatography technology, affinity chromatography technology	Doyon Y (2006), Huttlin EL (2017)	2
RBBP7	1	DDB1	6	affinity chromatography technology	Mouysset J (2015)	1
DDB1	6	HDAC1	4	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Ji Q (2014), Ji Q (2014), Zhao R (2014), Romani B (2016)	4
ARID4B	1	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Fleischer TC (2003), Joshi P (2013)	2
COPS5	0	CUL4A	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Angers S (2006), He YJ (2006), McCall CM (2008), Bennett EJ (2010), Bennett EJ (2010), Bennett EJ (2010), Gastaldello S (2012), Olma MH (2009), Olma MH (2009), Rao F (2014), Pick E (2012), Groisman R (2003), Groisman R (2003), Huttlin EL (2015), Cavadini S (2016), Scherer PC (2016), Scherer PC (2016), Huttlin EL (2017)	19
HDAC1	4	PML	7	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology	Khan MM (2001), Khan MM (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Morey L (2008), Kuo HY (2013), Kim YE (2015)	10
ZNF704	2	CUL1	7	affinity chromatography technology	Huttlin EL (2017)	1
CUL1	7	HNRNPL	3	affinity chromatography technology	Bennett EJ (2010)	1
EMD	0	SAP130	2	affinity chromatography technology	Holaska JM (2007)	1
TAF3	0	SAP130	2	affinity chromatography technology	Gangloff YG (2001)	1
PML	7	CUL1	7	affinity chromatography technology	Shima Y (2008)	1
SAP30	1	SUDS3	3	affinity chromatography technology	Hein MY (2015)	1
VHL	0	ELOB	1	affinity chromatography technology, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Ohh M (1999), Ohh M (1999), Min JH (2002), Hacker KE (2008), Menon S (2008), Kamura T (2002), Kamura T (2002), Kuznetsova AV (2003), Cockman ME (2000), Sufan RI (2009), Stickle NH (2004), Lai Y (2011), Norman JA (2006), Kinoshita K (2007), Lai Y (2012), Mahrour N (2008), Mahrour N (2008), Grosfeld A (2007), Foxler DE (2012), He X (2011), McClellan AJ (2005), Bex C (2007), Pause A (1997), Pause A (1997), Iliopoulos O (1998), Feldman DE (2003), Kibel A (1995), Kibel A (1995), Pause A (1999), Pause A (1999), Duan DR (1995), Kamura T (2004), Russell RC (2008), Russell RC (2008), Essers PB (2014), Gerez J (2015), Nguyen HC (2015), Lee SB (2016), Uchida T (2016), Zhang C (2016), Huttlin EL (2017), Sun W (2017)	43
MYC	2	HBP1	1	two hybrid, affinity chromatography technology, affinity chromatography technology	Escamilla-Powers JR (2010), Escamilla-Powers JR (2010), Escamilla-Powers JR (2010)	3
SAP30	1	RBBP7	1	affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (1998), Zhang Y (1998), Zhang Y (1999), Kuzmichev A (2002), Lai A (2001), Zhang Y (1998), Zhang Y (1998), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017), Hauri S (2016)	11
HBP1	1	RBBP7	1	affinity chromatography technology	Lampert F (2018)	1
PHF23	3	SAP130	2	affinity chromatography technology	Huttlin EL (2017)	1
HBP1	1	ING2	0	affinity chromatography technology	Lampert F (2018)	1
CUL2	3	GPS1	1	affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Lyapina S (2001)	2
CUL1	7	GPS1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Min KW (2005), Min KW (2005), Lee JE (2011), Bennett EJ (2010), Lyapina S (2001), Reitsma JM (2017)	6
HBP1	1	CUL4A	2	affinity chromatography technology	Lampert F (2018)	1
SAP25	1	SIN3B	5	affinity chromatography technology	Shiio Y (2006)	1
HBP1	1	SAP130	2	affinity chromatography technology	Lampert F (2018)	1
DDB1	6	SAP30	1	affinity chromatography technology, affinity chromatography technology	Ji Q (2014), Ji Q (2014)	2
SOX2	4	SIN3A	13	affinity chromatography technology	Engelen E (2011)	1
MAX	0	SIN3A	13	affinity chromatography technology, affinity chromatography technology	Li X (2015), Cheng J (2017)	2
FOXK2	9	ARID4B	1	affinity chromatography technology	Li X (2015)	1
RBBP7	1	SIN3B	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017), Hauri S (2016)	4
SAP25	1	SAP130	2	affinity chromatography technology	Shiio Y (2006)	1
CUL4A	2	EMD	0	affinity chromatography technology	Montes de Oca R (2009)	1
DYNLT1	3	SAP130	2	bioid	Gupta GD (2015)	1
GATAD1	0	ING2	0	affinity chromatography technology	Varier RA (2016)	1
FOXK1	5	SAP130	2	affinity chromatography technology	Li X (2015)	1
CUL4B	8	HDAC1	4	affinity chromatography technology, affinity chromatography technology, biochemical	Ji Q (2014), Ji Q (2014), Ji Q (2014)	3
TFAP4	3	FOXK1	5	affinity chromatography technology	Huttlin EL (2017)	1
ZNF704	2	ING2	0	affinity chromatography technology	Huttlin EL (2017)	1
HNRNPL	3	CUL4A	2	affinity chromatography technology	Fei T (2017)	1
NANOG	0	DDB1	6	affinity chromatography technology	Oliviero G (2015)	1
FOXK2	9	ING2	0	affinity chromatography technology	Li X (2015)	1
SMAD3	1	HDAC1	4	two hybrid, pull down	Liberati NT (2001), Akiyoshi S (1999)	2
HBP1	1	CUL4B	8	affinity chromatography technology	Lampert F (2018)	1
SINHCAF	0	SIN3A	13	affinity chromatography technology	Huttlin EL (2017)	1
FOXK1	5	FOXK2	9	affinity chromatography technology	Li X (2015)	1
GPS1	1	SAP130	2	affinity chromatography technology, pull down	Menon S (2008), Menon S (2008)	2
RBBP7	1	H3F3A	1	affinity chromatography technology	Hauri S (2016)	1
RARA	5	HDAC2	1	affinity chromatography technology, affinity chromatography technology, imaging technique	Kraemer OH (2008), Zheng B (2011), Zheng B (2011)	3
SIN3A	13	MXD3	1	two hybrid, affinity chromatography technology	Meroni G (1997), Huttlin EL (2017)	2
TPX2	4	SAP130	2	affinity chromatography technology	Hein MY (2015)	1
HNRNPL	3	SAP130	2	affinity chromatography technology	Fei T (2017)	1
SINHCAF	0	SUDS3	3	affinity chromatography technology	Huttlin EL (2017)	1
EMD	0	HDAC1	4	affinity chromatography technology	Holaska JM (2007)	1
NANOG	0	CUL4A	2	affinity chromatography technology	Oliviero G (2015)	1
GATAD1	0	SAP130	2	affinity chromatography technology	Varier RA (2016)	1
DDB1	6	SUDS3	3	affinity chromatography technology, affinity chromatography technology	Ji Q (2014), Ji Q (2014)	2
CUL2	3	CUL4B	8	affinity chromatography technology	Bennett EJ (2010)	1
ARID4B	1	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Fleischer TC (2003), Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	4
SAP130	2	CUL2	3	affinity chromatography technology, pull down	Menon S (2008), Menon S (2008)	2
SAP130	2	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Fleischer TC (2003), Xue Y (1998), Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	5
NANOG	0	SINHCAF	0	affinity chromatography technology	Oliviero G (2015)	1
SAP30	1	FOXK2	9	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Hein MY (2015), Li X (2015), Shan L (2016), Shan L (2016), Shan L (2016)	5
KIF20A	3	SAP130	2	affinity chromatography technology	Hein MY (2015)	1
HDAC1	4	H3F3A	1	affinity chromatography technology	Hein MY (2015)	1
VHL	0	RBBP7	1	affinity chromatography technology	Lai Y (2011)	1
COPS5	0	VHL	0	affinity chromatography technology	Bemis L (2004)	1
ING2	0	SAP30	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Doyon Y (2006), Hein MY (2015), Huttlin EL (2017)	3
HDAC1	4	HBP1	1	affinity chromatography technology, affinity chromatography technology	Swanson KA (2004), Lampert F (2018)	2
SINHCAF	0	ARID4B	1	affinity chromatography technology	Huttlin EL (2017)	1
CUL4A	2	DDB1	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Guerrero-Santoro J (2008), Guerrero-Santoro J (2008), Angers S (2006), Angers S (2006), Jin J (2006), Wang H (2006), Kapetanaki MG (2006), Matsuda N (2005), Hu J (2004), Hu J (2004), Hu J (2004), Ahn J (2010), Maddika S (2009), Fischer ES (2011), Tan L (2007), He YJ (2006), He YJ (2006), He YJ (2006), McCall CM (2008), McCall CM (2008), Shiyanov P (1999), Bennett EJ (2010), Gastaldello S (2012), Kanei-Ishii C (2012), Hodgson AJ (2012), Kulaksiz G (2005), Wu Z (2012), Wu Z (2012), Olma MH (2009), Olma MH (2009), Havugimana PC (2012), Rao F (2014), Wan C (2015), Liu Y (2015), Zha Z (2015), Mouysset J (2015), Gao J (2015), Yang Y (2016), Yang Y (2016), Scherer PC (2016), Eichner R (2016), Mo Y (2017), Mo Y (2017), Peng Z (2016), Higa LA (2006), Ohtake F (2007)	46
SMAD3	1	MAX	0	pull down, imaging technique	Grinberg AV (2003), Chen TC (2014)	2
HBP1	1	ARID4B	1	affinity chromatography technology	Lampert F (2018)	1
ZNF704	2	SIN3A	13	affinity chromatography technology	Huttlin EL (2017)	1
HNRNPL	3	TFAP4	3	affinity chromatography technology	Fei T (2017)	1
DDB1	6	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ji Q (2014), Ji Q (2014), Romani B (2016)	3
COPS5	0	SF3B1	12	affinity chromatography technology	Bennett EJ (2010)	1
SMAD3	1	CUL1	7	affinity chromatography technology	Ray D (2005)	1
HDAC2	1	PML	7	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wu WS (2001), Morey L (2008), Kraemer OH (2008), Kim YE (2015)	4
SINHCAF	0	FOXK1	5	affinity chromatography technology	Huttlin EL (2017)	1
ZNF704	2	SUDS3	3	affinity chromatography technology	Huttlin EL (2017)	1
SOX2	4	FOXK2	9	affinity chromatography technology	Cox JL (2013)	1
DDB1	6	GPS1	1	affinity chromatography technology, pull down, fluorescent resonance energy transfe	Jin J (2006), Emberley ED (2012), Cavadini S (2016)	3
FOXK1	5	SIN3A	13	affinity chromatography technology	Li X (2015)	1
MXD1	2	ARID4B	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
FOXK2	9	SIN3A	13	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, pull down	Li X (2015), Ji Z (2014), Ji Z (2014), Shan L (2016), Shan L (2016), Shan L (2016), Shan L (2016)	7
MYC	2	CUL4A	2	affinity chromatography technology	Choi SH (2010)	1
VHL	0	CUL2	3	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Ohh M (1999), Kamura T (2001), Hacker KE (2008), Hacker KE (2008), Menon S (2008), Chew EH (2007), Ietta F (2006), Megumi Y (2005), Kamura T (2002), Kuznetsova AV (2003), Hansen WJ (2002), Cockman ME (2000), Lisztwan J (1999), Lisztwan J (1999), Sufan RI (2006), Sufan RI (2009), Stickle NH (2004), Lai Y (2011), Norman JA (2006), Knauth K (2006), Lonergan KM (1998), Lai Y (2012), Miller F (2005), Mahrour N (2008), Grosfeld A (2007), Russell RC (2011), Foxler DE (2012), Bonicalzi ME (2001), Bennett EJ (2010), Kanaya K (2002), Liakopoulos D (1999), Pause A (1997), Pause A (1997), Pause A (1997), Iliopoulos O (1998), Pause A (1999), Pause A (1999), Xin H (2011), Kamura T (2004), Kamura T (2004), Heir P (2013), Russell RC (2008), Russell RC (2008), Essers PB (2014), Nguyen HC (2015), Lee SB (2016), Uchida T (2016), Heir P (2016), Chen K (2016), Uematsu K (2016), Huttlin EL (2017), Sun W (2017), Sun W (2017)	54
TFAP4	3	CUL1	7	affinity chromatography technology	DAnnibale S (2014)	1
SAP30	1	HDAC1	4	affinity chromatography technology, affinity chromatography technology, pull down, pull down, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huang NE (2003), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1999), Zhang Y (1999), Swanson KA (2004), Yochum GS (2001), Kuzmichev A (2002), Kuzmichev A (2002), Viiri KM (2006), Binda O (2008), Lai A (2001), Skowyra D (2001), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Xue Y (1998), Bantscheff M (2011), Joshi P (2013), Hein MY (2015), Hein MY (2015), Huttlin EL (2017)	24
MAX	0	HDAC2	1	affinity chromatography technology	Hauri S (2016)	1
FOXK1	5	SUDS3	3	affinity chromatography technology	Li X (2015)	1
PML	7	H3F3A	1	affinity chromatography technology, imaging technique	Delbarre E (2013), Delbarre E (2013)	2
SUDS3	3	SIN3B	5	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alland L (2002), Alland L (2002), Alland L (2002), Huttlin EL (2015), Huttlin EL (2017)	5
PML	7	RARA	5	pull down, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Zhong S (1999), Zhong S (1999), Minucci S (2000), Kraemer OH (2008), Wang K (2010), Wang K (2010), Cote S (2000), Bellodi C (2006), Villa R (2007)	9
PHF23	3	SIN3B	5	affinity chromatography technology	Huttlin EL (2017)	1
CUL1	7	DDB1	6	affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Gastaldello S (2012)	2
HDAC2	1	VHL	0	pull down, affinity chromatography technology, genetic interference	Mahon PC (2001), Hwang IY (2012), Shen JP (2017)	3
GATAD1	0	SIN3A	13	affinity chromatography technology	Varier RA (2016)	1
DYNLT1	3	CUL4B	8	bioid	Gupta GD (2015)	1
HDAC2	1	MXD1	2	affinity chromatography technology, pull down	Laherty CD (1997), Spronk CA (2000)	2
CUL2	3	ELOB	1	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Kamura T (2001), Menon S (2008), Megumi Y (2005), Kamura T (2002), Brower CS (2002), Bennett EJ (2010), Pause A (1997), Kamura T (2004), Kelsall IR (2013)	9
SAP25	1	HDAC2	1	affinity chromatography technology	Shiio Y (2006)	1
SOX2	4	HDAC1	4	affinity chromatography technology	Engelen E (2011)	1
TFAP4	3	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Ku WC (2009), Ku WC (2009)	2
SINHCAF	0	SAP130	2	affinity chromatography technology	Huttlin EL (2017)	1
DDB1	6	COPS5	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study	Angers S (2006), Jin J (2006), Emberley ED (2012), Bennett EJ (2010), Olma MH (2009), He F (2013)	6
ARID4B	1	SAP130	2	affinity chromatography technology, biochemical	Fleischer TC (2003), Wan C (2015)	2
MAX	0	COPS5	0	two hybrid	Bandyopadhyay S (2010)	1
FOXK1	5	ING2	0	affinity chromatography technology	Li X (2015)	1
PHF23	3	SUDS3	3	affinity chromatography technology	Huttlin EL (2017)	1
MYC	2	SUPT3H	4	affinity chromatography technology, pull down, pull down	Liu X (2003), Liu X (2003), Liu X (2008)	3
DDB1	6	ARID4B	1	affinity chromatography technology, affinity chromatography technology	Ji Q (2014), Ji Q (2014)	2
SMAD3	1	SIN3A	13	pull down	Liberati NT (2001)	1
MXD1	2	SAP30	1	pull down	Spronk CA (2000)	1
HBP1	1	SAP30	1	affinity chromatography technology	Lampert F (2018)	1
NANOG	0	ING2	0	affinity chromatography technology	Oliviero G (2015)	1
ING2	0	SIN3B	5	affinity chromatography technology	Huttlin EL (2017)	1
HDAC1	4	PRDM5	1	affinity chromatography technology, affinity chromatography technology	Duan Z (2007), Duan Z (2007)	2
FOXK2	9	SAP130	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Li X (2015), Shan L (2016), Shan L (2016), Shan L (2016)	4
FOXK1	5	ARID4B	1	affinity chromatography technology	Li X (2015)	1
CUL4B	8	RBBP7	1	affinity chromatography technology	Mouysset J (2015)	1
PML	7	SIN3A	13	pull down, affinity chromatography technology	Khan MM (2001), Khan MM (2001)	2
TAF10	0	TAF3	0	affinity chromatography technology, affinity chromatography technology, pull down, imaging technique	Jeronimo C (2007), Gangloff YG (2001), Soutoglou E (2005), Soutoglou E (2005)	4
SIN3A	13	ARID4B	1	affinity chromatography technology, affinity chromatography technology, biochemical	Fleischer TC (2003), Fleischer TC (2003), Wan C (2015)	3
PHF23	3	SAP30	1	affinity chromatography technology	Huttlin EL (2017)	1
FOXK2	9	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Li X (2015), Shan L (2016), Shan L (2016), Shan L (2016)	4
SINHCAF	0	ING2	0	affinity chromatography technology	Huttlin EL (2017)	1
PRDM5	1	SAP130	2	affinity chromatography technology	Huttlin EL (2017)	1
RBBP7	1	SIN3A	13	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (1998), Kuzmichev A (2002), Nakamura T (2002), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	6
CUL4B	8	SUDS3	3	affinity chromatography technology, affinity chromatography technology, biochemical	Ji Q (2014), Ji Q (2014), Ji Q (2014)	3
MAX	0	SAP130	2	affinity chromatography technology	Li X (2015)	1
HDAC1	4	MYC	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Matsuoka Y (2008), Matsuoka Y (2008), Liu T (2007), Liu T (2007), Liu T (2007), Koch HB (2007), Hwang IY (2012), Hein MY (2015)	8
GATAD1	0	SAP30	1	affinity chromatography technology	Varier RA (2016)	1
CUL2	3	EMD	0	affinity chromatography technology	Bennett EJ (2010)	1
HNRNPL	3	ZNF704	2	affinity chromatography technology	Fei T (2017)	1
MAX	0	MXD1	2	pull down, pull down, two hybrid, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Lee CM (2002), Ayer DE (1993), Gupta K (1998), Nair SK (2003), Hatakeyama S (2005), Wang Z (2006), Gordan JD (2007), Ayer DE (1993), Naderi S (1999), Huttlin EL (2015), FitzGerald MJ (1999), Huttlin EL (2017), Cheng J (2017), Hauri S (2016)	14
CUL4A	2	RBBP7	1	affinity chromatography technology, affinity chromatography technology	He YJ (2006), Mouysset J (2015)	2
MYC	2	MAX	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, pull down, pull down, pull down, two hybrid, two hybrid, two hybrid, pull down, x-ray crystallography, pull down, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, fluorescent resonance energy transfe, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), McMahon SB (2000), McMahon SB (1998), Cheng SW (1999), Mac Partlin M (2003), Mac Partlin M (2003), Blackwood EM (1991), Lee CM (2002), Billin AN (1999), Gupta K (1998), Meroni G (1997), Nair SK (2003), Nair SK (2003), FitzGerald MJ (1999), Meroni G (2000), Hatakeyama S (2005), Bandyopadhyay S (2010), Matsuoka Y (2009), Cowling VH (2006), Wang Z (2006), Faiola F (2005), Siegel PM (2003), Veldman T (2003), Patel JH (2004), Liu T (2007), Zhang Y (2007), Gordan JD (2007), Gordan JD (2007), Gargano B (2007), Zippo A (2007), Zippo A (2007), Zhang P (2010), Kim J (2010), Kim J (2010), Kim J (2010), Kim J (2010), Koch HB (2007), Koch HB (2007), Patel JH (2006), Lavigne P (1998), Amente S (2007), Ayer DE (1993), Huang Z (2004), Huang Z (2004), Okano HJ (1999), Agrawal P (2010), Agrawal P (2010), Wong WJ (2013), Wang J (2011), Yu L (2009), Liu X (2003), Hein MY (2015), Li X (2015), Li X (2015), Kalkat M (2014), Hauri S (2016)	56
MYC	2	PML	7	affinity chromatography technology, affinity chromatography technology, pull down	Cairo S (2005), Buschbeck M (2007), Buschbeck M (2007)	3
RBBP7	1	SAP130	2	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CUL4A	2	CUL4B	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Guerrero-Santoro J (2008), Angers S (2006), Bennett EJ (2010), Bennett EJ (2010), Sertic S (2013)	5
SUDS3	3	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Fleischer TC (2003), Alland L (2002), Joshi P (2013), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	6
GATAD1	0	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vermeulen M (2010), Huttlin EL (2015), Hein MY (2015), Varier RA (2016), Huttlin EL (2017)	5
SAP30	1	SIN3B	5	biochemical, affinity chromatography technology, affinity chromatography technology	Zhang Y (1999), Hein MY (2015), Hein MY (2015)	3
SINHCAF	0	SIN3B	5	affinity chromatography technology	Huttlin EL (2017)	1
ING2	0	SUDS3	3	affinity chromatography technology, affinity chromatography technology	Doyon Y (2006), Huttlin EL (2017)	2
RBBP7	1	ARID4B	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
SIN3B	5	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Romm E (2005), Bantscheff M (2011)	2
SMAD3	1	PML	7	affinity chromatography technology	Lin HK (2004)	1
SAP130	2	ELOB	1	affinity chromatography technology	Menon S (2008)	1
SAP130	2	CUL1	7	affinity chromatography technology	Menon S (2008)	1
SUDS3	3	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Fleischer TC (2003), Joshi P (2013)	2
FOXK2	9	PHF23	3	affinity chromatography technology	Li X (2015)	1
RBBP7	1	FOXK1	5	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
HDAC2	1	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2003), Adenuga D (2010), Xue Y (1998), Havugimana PC (2012), Bantscheff M (2011), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017), Hauri S (2016)	9
NANOG	0	SOX2	4	affinity chromatography technology	Oliviero G (2015)	1
SAP25	1	RBBP7	1	affinity chromatography technology	Shiio Y (2006)	1
GATAD1	0	SUDS3	3	affinity chromatography technology	Varier RA (2016)	1
CUL4B	8	SAP30	1	affinity chromatography technology, affinity chromatography technology	Ji Q (2014), Ji Q (2014)	2
RARA	5	SAP130	2	affinity chromatography technology	McNamara S (2008)	1
MXD1	2	MXD3	1	affinity chromatography technology	Cheng J (2017)	1
ING2	0	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Doyon Y (2006), Huttlin EL (2017)	2
CUL4B	8	GPS1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Hein MY (2015), Higa LA (2006)	3
MYC	2	SMAD3	1	affinity chromatography technology, pull down, two hybrid	Feng XH (2002), Feng XH (2002), Feng XH (2002)	3
CUL4A	2	CUL1	7	biochemical	He YJ (2006)	1
NANOG	0	SIN3A	13	affinity chromatography technology	Oliviero G (2015)	1
GATAD1	0	FOXK1	5	affinity chromatography technology	Varier RA (2016)	1
TFAP4	3	SIN3B	5	affinity chromatography technology	Ku WC (2009)	1
CUL4B	8	SAP130	2	affinity chromatography technology, affinity chromatography technology, biochemical	Ji Q (2014), Ji Q (2014), Ji Q (2014)	3
DDB1	6	SIN3A	13	affinity chromatography technology, affinity chromatography technology, pull down	Ji Q (2014), Ji Q (2014), Ji Q (2014)	3
CUL4B	8	ARID4B	1	affinity chromatography technology, affinity chromatography technology	Ji Q (2014), Ji Q (2014)	2
PML	7	SAP130	2	affinity chromatography technology	McNamara S (2008)	1
VHL	0	SAP130	2	affinity chromatography technology, affinity chromatography technology	Menon S (2008), Menon S (2008)	2
SIN3A	13	MXD1	2	pull down, x-ray crystallography, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Swanson KA (2004), Swanson KA (2004), Brubaker K (2000), Ayer DE (1995), Farias EF (2010), Huttlin EL (2015), Huttlin EL (2017), Cheng J (2017)	8
ZNF704	2	SAP130	2	affinity chromatography technology	Huttlin EL (2017)	1
ING2	0	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Doyon Y (2006), Doyon Y (2006), Shi X (2006), Binda O (2008), Joshi P (2013), Huttlin EL (2017)	6
DDB1	6	SAP130	2	affinity chromatography technology, affinity chromatography technology	Ji Q (2014), Ji Q (2014)	2
MAX	0	FOXK2	9	affinity chromatography technology, affinity chromatography technology	Li X (2015), Li X (2015)	2
ING2	0	SIN3A	13	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Doyon Y (2006), Doyon Y (2006), Shi X (2006), Huttlin EL (2017)	4
HDAC1	4	VHL	0	pull down, affinity chromatography technology	Mahon PC (2001), Hwang IY (2012)	2
GPS1	1	CUL4A	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Stotland A (2012), He YJ (2006), McCall CM (2008), Bennett EJ (2010), Scherer PC (2016)	5
COPS5	0	ELOB	1	affinity chromatography technology	Bennett EJ (2010)	1
HDAC1	4	RARA	5	pull down	Girard N (2013)	1
ING2	0	SAP130	2	affinity chromatography technology, affinity chromatography technology	Doyon Y (2006), Huttlin EL (2017)	2
MYC	2	VHL	0	affinity chromatography technology, affinity chromatography technology	Hwang IY (2012), Hwang IY (2012)	2
MXD3	1	SUDS3	3	affinity chromatography technology	Huttlin EL (2017)	1
SAP130	2	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Fleischer TC (2003), Xue Y (1998), Joshi P (2013)	3
GATAD1	0	SINHCAF	0	affinity chromatography technology	Varier RA (2016)	1
SAP30	1	HDAC2	1	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (1998), Zhang Y (1999), Kuzmichev A (2002), Viiri KM (2006), Lai A (2001), Zhang Y (1998), Zhang Y (1998), Adenuga D (2010), Xue Y (1998), Bantscheff M (2011), Hein MY (2015)	11
ZNF704	2	SAP30	1	affinity chromatography technology	Huttlin EL (2017)	1
HDAC1	4	RBBP7	1	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Ng HH (1999), Zhang Y (1999), Zhang Y (1997), Banach-Orlowska M (2009), Humphrey GW (2001), Zhang Y (1998), Zhang Y (1998), Xue Y (1998), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Yeh HH (2015), Yeh HH (2015), Huttlin EL (2017), Hauri S (2016)	19
RBBP7	1	SINHCAF	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	3
SIN3A	13	SUDS3	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Fleischer TC (2003), Fleischer TC (2003), Fleischer TC (2003), Alland L (2002), Alland L (2002), Alland L (2002), Huttlin EL (2015), Huttlin EL (2017)	8
COPS5	0	CUL4B	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Bennett EJ (2010), Bennett EJ (2010), Bennett EJ (2010), Olma MH (2009), He F (2013), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	9
HDAC1	4	FOXK1	5	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
MXD1	2	HDAC1	4	pull down	Spronk CA (2000)	1
RBBP7	1	FOXK2	9	affinity chromatography technology, affinity chromatography technology, pull down	Huttlin EL (2015), Huttlin EL (2017), Shan L (2016)	3
SOX2	4	SAP130	2	affinity chromatography technology	Cox JL (2013)	1
GATAD1	0	ARID4B	1	affinity chromatography technology	Varier RA (2016)	1
MYC	2	DDB1	6	affinity chromatography technology	Choi SH (2010)	1
TFAP4	3	SAP130	2	affinity chromatography technology	Ku WC (2009)	1
FOXK2	9	TFAP4	3	affinity chromatography technology, affinity chromatography technology	Li X (2015), Huttlin EL (2017)	2
SIN3A	13	SAP130	2	affinity chromatography technology, affinity chromatography technology, biochemical	Fleischer TC (2003), Fleischer TC (2003), Wan C (2015)	3
SAP30	1	SINHCAF	0	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
COPS5	0	SAP130	2	affinity chromatography technology	Menon S (2008)	1
MXD3	1	ARID4B	1	affinity chromatography technology	Huttlin EL (2017)	1
MXD3	1	ING2	0	affinity chromatography technology	Huttlin EL (2017)	1
FOXK2	9	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Ji Z (2014), Huttlin EL (2017), Shan L (2016), Shan L (2016), Shan L (2016)	5
SAP25	1	PML	7	affinity chromatography technology	Shiio Y (2006)	1
COPS5	0	CUL2	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Sowa ME (2009), Choo YY (2011), Bennett EJ (2010), Bennett EJ (2010), Bennett EJ (2010), Olma MH (2009), Pick E (2012)	7
FOXK2	9	SUDS3	3	affinity chromatography technology	Li X (2015)	1
HBP1	1	SUDS3	3	affinity chromatography technology	Lampert F (2018)	1
HDAC2	1	SIN3A	13	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Zhang Y (2003), Fleischer TC (2003), Fleischer TC (2003), Hakimi MA (2003), Yang L (2003), Laherty CD (1997), Zhang Y (2002), Tong JK (1998), Zhang Y (2005), Nakamura T (2002), Sekhavat A (2007), Zou J (2004), Sun JM (2007), Xue Y (1998), Tsai SC (2002), Brandl A (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hsu DS (2014)	20
MXD3	1	SAP130	2	affinity chromatography technology	Huttlin EL (2017)	1
MXD1	2	SUDS3	3	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
PHF23	3	ARID4B	1	affinity chromatography technology	Huttlin EL (2017)	1