Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000311413 [[119205236, 119208023]] [[119205832, 119207134]]
NM_032015 [[119205209, 119208024]] [[119205832, 119207134]]
Promoter
Chrom Start End Description
chr11 119205222 119205247 CAGE_peak_1_at_RNF26_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr11 GH11I119360 119360106 119365873 2.16 [{'connected_gene': 'USP2', 'score': 558.95}, {'connected_gene': 'RNF26', 'score': 17.37}, {'connected_gene': 'ENSG00000245385', 'score': 12.54}, {'connected_gene': 'THY1', 'score': 10.72}, {'connected_gene': 'ABCG4', 'score': 10.39}, {'connected_gene': 'NLRX1', 'score': 10.36}, {'connected_gene': 'LOC101929089', 'score': 10.06}, {'connected_gene': 'GC11M119369', 'score': 0.44}, {'connected_gene': 'C1QTNF5', 'score': 0.37}, {'connected_gene': 'MFRP', 'score': 0.37}]
chr11 GH11I119346 119346868 119348005 0.54 [{'connected_gene': 'MFRP', 'score': 550.77}, {'connected_gene': 'C1QTNF5', 'score': 550.77}, {'connected_gene': 'RNF26', 'score': 6.03}, {'connected_gene': 'USP2', 'score': 5.25}, {'connected_gene': 'GC11M119369', 'score': 0.34}]
chr11 GH11I119310 119310699 119310930 0.4 [{'connected_gene': 'RNF26', 'score': 12.45}, {'connected_gene': 'ENSG00000245385', 'score': 12.42}, {'connected_gene': 'C1QTNF5', 'score': 11.68}, {'connected_gene': 'MFRP', 'score': 11.68}, {'connected_gene': 'ABCG4', 'score': 10.91}, {'connected_gene': 'PDZD3', 'score': 10.76}, {'connected_gene': 'NLRX1', 'score': 10.7}, {'connected_gene': 'MIR6756', 'score': 0.77}, {'connected_gene': 'PIR40709', 'score': 0.77}, {'connected_gene': 'MCAM', 'score': 0.39}, {'connected_gene': 'CBL', 'score': 0.15}]
chr11 GH11I119332 119332234 119335940 1.96 [{'connected_gene': 'RNF26', 'score': 568.64}, {'connected_gene': 'GC11M119332', 'score': 550.77}, {'connected_gene': 'C1QTNF5', 'score': 5.16}]
chr11 GH11I118564 118564323 118566635 1.99 [{'connected_gene': 'IFT46', 'score': 578.31}, {'connected_gene': 'RNF26', 'score': 13.68}, {'connected_gene': 'ARCN1', 'score': 11.42}, {'connected_gene': 'ENSG00000254909', 'score': 10.31}, {'connected_gene': 'UBE4A', 'score': 9.87}, {'connected_gene': 'TREHP1', 'score': 7.63}, {'connected_gene': 'RPL5P30', 'score': 0.77}]
chr11 GH11I119066 119066571 119068801 2.06 [{'connected_gene': 'VPS11', 'score': 587.92}, {'connected_gene': 'ENSG00000272186', 'score': 550.77}, {'connected_gene': 'DPAGT1', 'score': 24.02}, {'connected_gene': 'HMBS', 'score': 16.77}, {'connected_gene': 'ARCN1', 'score': 13.31}, {'connected_gene': 'H2AFX', 'score': 12.96}, {'connected_gene': 'C2CD2L', 'score': 12.94}, {'connected_gene': 'KMT2A', 'score': 12.53}, {'connected_gene': 'ENSG00000254909', 'score': 12.38}, {'connected_gene': 'SLC37A4', 'score': 12.37}, {'connected_gene': 'RPS25', 'score': 12.34}, {'connected_gene': 'TRAPPC4', 'score': 12.34}, {'connected_gene': 'UBE4A', 'score': 11.86}, {'connected_gene': 'RPL5P30', 'score': 11.19}, {'connected_gene': 'RNF26', 'score': 11.13}, {'connected_gene': 'RPL23AP64', 'score': 11.11}, {'connected_gene': 'HINFP', 'score': 10.95}, {'connected_gene': 'BCL9L', 'score': 10.64}, {'connected_gene': 'NLRX1', 'score': 10.4}, {'connected_gene': 'FOXR1', 'score': 10.18}, {'connected_gene': 'ENSG00000222529', 'score': 10.18}, {'connected_gene': 'UPK2', 'score': 10.13}, {'connected_gene': 'ENSG00000271751', 'score': 5.71}]
chr11 GH11I119015 119015746 119020375 2.06 [{'connected_gene': 'TRAPPC4', 'score': 622.84}, {'connected_gene': 'RPS25', 'score': 550.77}, {'connected_gene': 'MIR3656', 'score': 550.77}, {'connected_gene': 'PIR32149', 'score': 550.77}, {'connected_gene': 'PIR60932', 'score': 550.77}, {'connected_gene': 'GC11P119045', 'score': 550.77}, {'connected_gene': 'BCL9L', 'score': 22.3}, {'connected_gene': 'ARCN1', 'score': 19.32}, {'connected_gene': 'ENSG00000254909', 'score': 14.9}, {'connected_gene': 'UBE4A', 'score': 13.17}, {'connected_gene': 'RPL23AP64', 'score': 12.93}, {'connected_gene': 'ENSG00000254428', 'score': 11.42}, {'connected_gene': 'FOXR1', 'score': 11.2}, {'connected_gene': 'ENSG00000222529', 'score': 11.2}, {'connected_gene': 'UPK2', 'score': 11.11}, {'connected_gene': 'RNF26', 'score': 10.29}, {'connected_gene': 'RN7SL688P', 'score': 10.24}, {'connected_gene': 'CXCR5', 'score': 10.19}, {'connected_gene': 'ENSG00000245869', 'score': 10.19}, {'connected_gene': 'CCDC84', 'score': 0.34}]
chr11 GH11I119314 119314720 119322898 2.24 [{'connected_gene': 'MCAM', 'score': 550.77}, {'connected_gene': 'RNF26', 'score': 21.81}, {'connected_gene': 'CBL', 'score': 7.09}, {'connected_gene': 'IFT46', 'score': 6.27}, {'connected_gene': 'RPS25', 'score': 4.81}, {'connected_gene': 'ENSG00000271751', 'score': 4.79}, {'connected_gene': 'GC11M119321', 'score': 0.77}, {'connected_gene': 'MIR6756', 'score': 0.44}]
chr11 GH11I119090 119090741 119096602 2.5 [{'connected_gene': 'H2AFX', 'score': 550.77}, {'connected_gene': 'GC11M119097', 'score': 550.77}, {'connected_gene': 'KMT2A', 'score': 73.28}, {'connected_gene': 'HINFP', 'score': 65.6}, {'connected_gene': 'UBE4A', 'score': 58.73}, {'connected_gene': 'ARCN1', 'score': 52.05}, {'connected_gene': 'BCL9L', 'score': 50.4}, {'connected_gene': 'RPL5P30', 'score': 49.27}, {'connected_gene': 'ENSG00000254909', 'score': 39.2}, {'connected_gene': 'CCDC84', 'score': 38.84}, {'connected_gene': 'VPS11', 'score': 37.04}, {'connected_gene': 'IFT46', 'score': 36.17}, {'connected_gene': 'RPL23AP64', 'score': 33.81}, {'connected_gene': 'ENSG00000254428', 'score': 32.02}, {'connected_gene': 'RPS25', 'score': 30.38}, {'connected_gene': 'DPAGT1', 'score': 29.33}, {'connected_gene': 'RNF26', 'score': 22.29}, {'connected_gene': 'C2CD2L', 'score': 15.2}, {'connected_gene': 'MPZL2', 'score': 13.97}, {'connected_gene': 'HMBS', 'score': 12.16}, {'connected_gene': 'ENSG00000245869', 'score': 11.94}, {'connected_gene': 'DDX6', 'score': 11.24}, {'connected_gene': 'ENSG00000271751', 'score': 6.77}]
chr11 GH11I118979 118979871 118981027 1.13 [{'connected_gene': 'BCL9L', 'score': 21.9}, {'connected_gene': 'TRAPPC4', 'score': 18.42}, {'connected_gene': 'ARCN1', 'score': 13.32}, {'connected_gene': 'KMT2A', 'score': 12.53}, {'connected_gene': 'ENSG00000254909', 'score': 12.48}, {'connected_gene': 'UBE4A', 'score': 11.86}, {'connected_gene': 'RN7SL688P', 'score': 11.39}, {'connected_gene': 'UPK2', 'score': 11.36}, {'connected_gene': 'RPL23AP64', 'score': 11.24}, {'connected_gene': 'DPAGT1', 'score': 11.23}, {'connected_gene': 'RPL5P30', 'score': 11.2}, {'connected_gene': 'RNF26', 'score': 11.12}, {'connected_gene': 'TREH', 'score': 10.6}, {'connected_gene': 'ENSG00000245869', 'score': 10.59}, {'connected_gene': 'CXCR5', 'score': 10.59}, {'connected_gene': 'NLRX1', 'score': 9.52}, {'connected_gene': 'FOXR1', 'score': 0.44}, {'connected_gene': 'ENSG00000280502', 'score': 0.39}]
chr11 GH11I118906 118906480 118931105 2.88 [{'connected_gene': 'BCL9L', 'score': 577.01}, {'connected_gene': 'DPAGT1', 'score': 32.47}, {'connected_gene': 'UBE4A', 'score': 28.16}, {'connected_gene': 'ENSG00000254909', 'score': 28.08}, {'connected_gene': 'RPL23AP64', 'score': 25.24}, {'connected_gene': 'ARCN1', 'score': 24.99}, {'connected_gene': 'ENSG00000254428', 'score': 23.08}, {'connected_gene': 'RNF26', 'score': 19.84}, {'connected_gene': 'CCDC84', 'score': 16.8}, {'connected_gene': 'KMT2A', 'score': 15.66}, {'connected_gene': 'CXCR5', 'score': 15.27}, {'connected_gene': 'MPZL2', 'score': 13.97}, {'connected_gene': 'DDX6', 'score': 13.42}, {'connected_gene': 'RPS25', 'score': 13.01}, {'connected_gene': 'VPS11', 'score': 12.54}, {'connected_gene': 'HMBS', 'score': 12.4}, {'connected_gene': 'ENSG00000222529', 'score': 12.22}, {'connected_gene': 'FOXR1', 'score': 12.22}, {'connected_gene': 'C2CD2L', 'score': 12.12}, {'connected_gene': 'ENSG00000255121', 'score': 11.37}, {'connected_gene': 'ENSG00000245869', 'score': 11.36}, {'connected_gene': 'JAML', 'score': 10.87}, {'connected_gene': 'HINFP', 'score': 10.27}, {'connected_gene': 'H2AFX', 'score': 10.24}, {'connected_gene': 'TRAPPC4', 'score': 9.9}, {'connected_gene': 'RPL5P30', 'score': 9.78}, {'connected_gene': 'UPK2', 'score': 3.43}, {'connected_gene': 'HYOU1', 'score': 2.91}, {'connected_gene': 'SLC37A4', 'score': 2.67}, {'connected_gene': 'PHLDB1', 'score': 2.39}, {'connected_gene': 'CBL', 'score': 2.38}, {'connected_gene': 'CCDC153', 'score': 1.67}, {'connected_gene': 'MIR4492', 'score': 0.44}, {'connected_gene': 'GC11P118898', 'score': 0.34}]
chr11 GH11I118874 118874824 118879867 1.58 [{'connected_gene': 'BCL9L', 'score': 28.47}, {'connected_gene': 'DDX6', 'score': 18.49}, {'connected_gene': 'ENSG00000254909', 'score': 18.27}, {'connected_gene': 'UBE4A', 'score': 17.44}, {'connected_gene': 'ARCN1', 'score': 16.84}, {'connected_gene': 'RPL23AP64', 'score': 16.82}, {'connected_gene': 'ENSG00000254428', 'score': 14.53}, {'connected_gene': 'MPZL2', 'score': 13.97}, {'connected_gene': 'DPAGT1', 'score': 13.42}, {'connected_gene': 'RPS25', 'score': 12.44}, {'connected_gene': 'TREHP1', 'score': 11.89}, {'connected_gene': 'UPK2', 'score': 11.28}, {'connected_gene': 'RN7SL688P', 'score': 11.03}, {'connected_gene': 'RNF26', 'score': 10.41}, {'connected_gene': 'PHLDB1', 'score': 9.36}, {'connected_gene': 'LOC105369519', 'score': 7.75}, {'connected_gene': 'TREH', 'score': 7.72}, {'connected_gene': 'CXCR5', 'score': 6.42}, {'connected_gene': 'CCDC84', 'score': 5.87}, {'connected_gene': 'IFT46', 'score': 4.71}, {'connected_gene': 'TRAPPC4', 'score': 4.54}, {'connected_gene': 'CBL', 'score': 4.45}, {'connected_gene': 'KMT2A', 'score': 4.01}, {'connected_gene': 'VPS11', 'score': 2.82}, {'connected_gene': 'CCDC153', 'score': 1.72}, {'connected_gene': 'ENSG00000201535', 'score': 0.26}]
chr11 GH11I119120 119120334 119122740 2.03 [{'connected_gene': 'HINFP', 'score': 594.57}, {'connected_gene': 'RNF26', 'score': 22.22}, {'connected_gene': 'ARCN1', 'score': 19.83}, {'connected_gene': 'UBE4A', 'score': 19.6}, {'connected_gene': 'ENSG00000254909', 'score': 10.4}, {'connected_gene': 'BCL9L', 'score': 9.82}, {'connected_gene': 'PIR55037', 'score': 0.39}]
chr11 GH11I120237 120236672 120236981 0.74 [{'connected_gene': 'POU2F3', 'score': 555.86}, {'connected_gene': 'RNF26', 'score': 18.83}, {'connected_gene': 'LOC649133', 'score': 0.31}]
chr11 GH11I120236 120236589 120236648 1.02 [{'connected_gene': 'POU2F3', 'score': 550.77}, {'connected_gene': 'RNF26', 'score': 10.26}, {'connected_gene': 'OAF', 'score': 0.31}]
chr11 GH11I120181 120181821 120190865 1.34 [{'connected_gene': 'TRIM29', 'score': 560.61}, {'connected_gene': 'RNF26', 'score': 22.72}, {'connected_gene': 'OAF', 'score': 18.11}, {'connected_gene': 'POU2F3', 'score': 12.1}, {'connected_gene': 'ENSG00000176984', 'score': 5.28}, {'connected_gene': 'LOC105369530', 'score': 0.77}]
chr11 GH11I118398 118398236 118403361 2.42 [{'connected_gene': 'ATP5MG', 'score': 550.77}, {'connected_gene': 'ENSG00000254873', 'score': 550.77}, {'connected_gene': 'IFT46', 'score': 14.36}, {'connected_gene': 'TMEM25', 'score': 13.16}, {'connected_gene': 'ENSG00000255384', 'score': 11.58}, {'connected_gene': 'KMT2A', 'score': 11.57}, {'connected_gene': 'ARCN1', 'score': 10.61}, {'connected_gene': 'RNF26', 'score': 10.26}, {'connected_gene': 'TTC36', 'score': 10.18}, {'connected_gene': 'FXYD6', 'score': 10.18}, {'connected_gene': 'DSCAML1', 'score': 9.93}, {'connected_gene': 'SLC37A4', 'score': 5.0}, {'connected_gene': 'LOC100131626', 'score': 0.37}, {'connected_gene': 'UBE4A', 'score': 0.26}]
chr11 GH11I119312 119312015 119313245 0.2 [{'connected_gene': 'MIR6756', 'score': 550.77}, {'connected_gene': 'RNF26', 'score': 12.45}, {'connected_gene': 'ENSG00000245385', 'score': 12.45}, {'connected_gene': 'C1QTNF5', 'score': 11.7}, {'connected_gene': 'MFRP', 'score': 11.7}, {'connected_gene': 'ABCG4', 'score': 10.91}, {'connected_gene': 'PDZD3', 'score': 10.76}, {'connected_gene': 'NLRX1', 'score': 10.7}, {'connected_gene': 'PIR40709', 'score': 0.44}, {'connected_gene': 'MCAM', 'score': 0.44}, {'connected_gene': 'CBL', 'score': 0.14}]
chr11 GH11I118529 118529270 118532574 1.98 [{'connected_gene': 'GC11P118532', 'score': 550.77}, {'connected_gene': 'TMEM25', 'score': 550.77}, {'connected_gene': 'LOC101929089', 'score': 550.77}, {'connected_gene': 'ENSG00000254909', 'score': 30.81}, {'connected_gene': 'UBE4A', 'score': 28.79}, {'connected_gene': 'BCL9L', 'score': 27.71}, {'connected_gene': 'RPL23AP64', 'score': 27.45}, {'connected_gene': 'ARCN1', 'score': 25.68}, {'connected_gene': 'IFT46', 'score': 25.33}, {'connected_gene': 'ENSG00000254428', 'score': 23.7}, {'connected_gene': 'KMT2A', 'score': 14.53}, {'connected_gene': 'DPAGT1', 'score': 13.38}, {'connected_gene': 'DDX6', 'score': 12.55}, {'connected_gene': 'RPL5P30', 'score': 11.99}, {'connected_gene': 'ENSG00000272186', 'score': 11.07}, {'connected_gene': 'RPS25', 'score': 10.9}, {'connected_gene': 'RNF26', 'score': 10.38}, {'connected_gene': 'VPS11', 'score': 9.88}, {'connected_gene': 'CCDC153', 'score': 4.55}, {'connected_gene': 'TTC36', 'score': 0.77}]
chr11 GH11I119308 119308050 119309102 0.38 [{'connected_gene': 'PIR40709', 'score': 550.77}, {'connected_gene': 'RNF26', 'score': 12.42}, {'connected_gene': 'ENSG00000245385', 'score': 12.42}, {'connected_gene': 'C1QTNF5', 'score': 11.68}, {'connected_gene': 'MFRP', 'score': 11.68}, {'connected_gene': 'ABCG4', 'score': 10.92}, {'connected_gene': 'PDZD3', 'score': 10.75}, {'connected_gene': 'NLRX1', 'score': 10.71}, {'connected_gene': 'MCAM', 'score': 7.67}, {'connected_gene': 'CCDC153', 'score': 6.76}, {'connected_gene': 'MIR6756', 'score': 0.77}, {'connected_gene': 'CBL', 'score': 0.15}]
chr11 GH11I119305 119305003 119307697 1 [{'connected_gene': 'PIR37472', 'score': 550.77}, {'connected_gene': 'PIR40709', 'score': 550.77}, {'connected_gene': 'GC11P119412', 'score': 550.77}, {'connected_gene': 'HINFP', 'score': 15.57}, {'connected_gene': 'RNF26', 'score': 12.07}, {'connected_gene': 'ENSG00000245385', 'score': 12.05}, {'connected_gene': 'C1QTNF5', 'score': 11.02}, {'connected_gene': 'MFRP', 'score': 11.02}, {'connected_gene': 'NLRX1', 'score': 10.87}, {'connected_gene': 'ABCG4', 'score': 10.53}, {'connected_gene': 'DPAGT1', 'score': 10.18}, {'connected_gene': 'C2CD2L', 'score': 10.18}, {'connected_gene': 'MCAM', 'score': 9.3}, {'connected_gene': 'RN7SL688P', 'score': 9.11}, {'connected_gene': 'BCL9L', 'score': 9.11}, {'connected_gene': 'UPK2', 'score': 9.11}, {'connected_gene': 'CBL', 'score': 0.15}]
chr11 GH11I120168 120168733 120169684 1.5 [{'connected_gene': 'ENSG00000176984', 'score': 550.77}, {'connected_gene': 'OAF', 'score': 14.89}, {'connected_gene': 'RNF26', 'score': 13.69}, {'connected_gene': 'TRIM29', 'score': 0.37}]
chr11 GH11I119336 119336398 119341729 2.13 [{'connected_gene': 'ENSG00000245385', 'score': 550.77}, {'connected_gene': 'C1QTNF5', 'score': 550.44}, {'connected_gene': 'RNF26', 'score': 84.84}, {'connected_gene': 'CBL', 'score': 5.04}, {'connected_gene': 'GC11M119337', 'score': 0.77}, {'connected_gene': 'MFRP', 'score': 0.44}]
chr11 GH11I118413 118413397 118416667 1.39 [{'connected_gene': 'ENSG00000269944', 'score': 550.77}, {'connected_gene': 'MPZL2', 'score': 14.05}, {'connected_gene': 'ENSG00000245869', 'score': 13.22}, {'connected_gene': 'BCL9L', 'score': 13.16}, {'connected_gene': 'ARCN1', 'score': 13.06}, {'connected_gene': 'DDX6', 'score': 12.41}, {'connected_gene': 'UBE4A', 'score': 12.26}, {'connected_gene': 'ENSG00000254909', 'score': 11.0}, {'connected_gene': 'RNF26', 'score': 10.28}, {'connected_gene': 'RPL23AP64', 'score': 10.18}, {'connected_gene': 'RPS25', 'score': 10.1}, {'connected_gene': 'SCN2B', 'score': 8.1}, {'connected_gene': 'IFT46', 'score': 6.75}, {'connected_gene': 'LOC100131626', 'score': 0.77}, {'connected_gene': 'ENSG00000254873', 'score': 0.39}, {'connected_gene': 'ATP5MG', 'score': 0.39}]

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