PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000227525	[[60681345, 60681740], [60687157, 60687402], [60688357, 60688460], [60689245, 60690915]]	[[60687165, 60687402], [60688357, 60688460], [60689245, 60689637]]
ENST00000536171	[[60687149, 60687402], [60688357, 60688460], [60689245, 60690848]]	[[60687165, 60687402], [60688357, 60688460], [60689245, 60689637]]
ENST00000540280	[[60690089, 60690113], [60690215, 60690915]]	None
NM_024092	[[60681370, 60681740], [60687157, 60687402], [60688357, 60688460], [60689245, 60690915]]	[[60687165, 60687402], [60688357, 60688460], [60689245, 60689637]]

Promoter

Chrom	Start	End	Description
chr11	60681419	60681431	CAGE_peak_3_at_TMEM109_5end
chr11	60681471	60681482	CAGE_peak_4_at_TMEM109_5end
chr11	60681506	60681517	CAGE_peak_6_at_TMEM109_5end
chr11	60681567	60681606	CAGE_peak_2_at_TMEM109_5end
chr11	60681611	60681706	CAGE_peak_1_at_TMEM109_5end
chr11	60689789	60689814	CAGE_peak_5_at_TMEM109_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I061791	61791191	61794259	2.27	[{'connected_gene': 'FADS2', 'score': 583.16}, {'connected_gene': 'MIR611', 'score': 550.77}, {'connected_gene': 'FEN1', 'score': 550.77}, {'connected_gene': 'TMEM258', 'score': 550.77}, {'connected_gene': 'CPSF7', 'score': 45.31}, {'connected_gene': 'CSKMT', 'score': 43.36}, {'connected_gene': 'GANAB', 'score': 40.43}, {'connected_gene': 'TMEM138', 'score': 37.3}, {'connected_gene': 'EML3', 'score': 29.01}, {'connected_gene': 'TUT1', 'score': 28.93}, {'connected_gene': 'INTS5', 'score': 27.86}, {'connected_gene': 'TMEM109', 'score': 27.59}, {'connected_gene': 'RN7SL23P', 'score': 26.63}, {'connected_gene': 'MTA2', 'score': 23.47}, {'connected_gene': 'TAF6L', 'score': 20.06}, {'connected_gene': 'TMEM179B', 'score': 18.46}, {'connected_gene': 'UBXN1', 'score': 18.24}, {'connected_gene': 'SDHAF2', 'score': 12.72}, {'connected_gene': 'MIR1908', 'score': 12.24}, {'connected_gene': 'FADS1', 'score': 12.18}, {'connected_gene': 'EEF1G', 'score': 11.76}, {'connected_gene': 'VPS37C', 'score': 10.96}, {'connected_gene': 'BEST1', 'score': 10.61}, {'connected_gene': 'GC11P061758', 'score': 0.29}]
chr11	GH11I061428	61428286	61431575	2.26	[{'connected_gene': 'CPSF7', 'score': 575.2}, {'connected_gene': 'SDHAF2', 'score': 557.13}, {'connected_gene': 'ENSG00000256591', 'score': 550.77}, {'connected_gene': 'TMEM216', 'score': 25.13}, {'connected_gene': 'TMEM138', 'score': 16.23}, {'connected_gene': 'RN7SL23P', 'score': 15.23}, {'connected_gene': 'VPS37C', 'score': 11.45}, {'connected_gene': 'TMEM109', 'score': 10.91}, {'connected_gene': 'DDB1', 'score': 10.37}, {'connected_gene': 'TKFC', 'score': 10.35}]
chr11	GH11I060898	60898877	60900098	0.92	[{'connected_gene': 'CPSF7', 'score': 19.58}, {'connected_gene': 'TMEM138', 'score': 16.37}, {'connected_gene': 'RN7SL23P', 'score': 15.65}, {'connected_gene': 'CCDC86', 'score': 12.03}, {'connected_gene': 'ENSG00000255959', 'score': 12.03}, {'connected_gene': 'TMEM109', 'score': 11.4}, {'connected_gene': 'PTGDR2', 'score': 11.08}, {'connected_gene': 'ENSG00000256813', 'score': 11.06}, {'connected_gene': 'MS4A10', 'score': 10.54}, {'connected_gene': 'PRPF19', 'score': 7.73}, {'connected_gene': 'PIR47747', 'score': 0.31}]
chr11	GH11I061566	61566952	61568233	1.28	[{'connected_gene': 'CPSF7', 'score': 19.67}, {'connected_gene': 'TMEM138', 'score': 16.41}, {'connected_gene': 'RN7SL23P', 'score': 15.74}, {'connected_gene': 'TMEM109', 'score': 11.03}, {'connected_gene': 'LOC105369331', 'score': 0.34}, {'connected_gene': 'SYT7', 'score': 0.34}, {'connected_gene': 'ENSG00000256443', 'score': 0.31}]
chr11	GH11I060909	60909359	60918120	2.74	[{'connected_gene': 'TMEM109', 'score': 555.54}, {'connected_gene': 'GC11M060911', 'score': 550.77}, {'connected_gene': 'LOC105369323', 'score': 550.77}, {'connected_gene': 'CD6', 'score': 12.23}, {'connected_gene': 'CD5', 'score': 10.42}, {'connected_gene': 'PRPF19', 'score': 9.11}, {'connected_gene': 'PTGDR2', 'score': 8.31}, {'connected_gene': 'SLC15A3', 'score': 5.32}, {'connected_gene': 'CYB561A3', 'score': 2.5}, {'connected_gene': 'VPS37C', 'score': 2.14}, {'connected_gene': 'ENSG00000257052', 'score': 0.44}, {'connected_gene': 'PIR49215', 'score': 0.44}, {'connected_gene': 'GC11P060908', 'score': 0.44}]
chr11	GH11I060919	60918409	60918558	0.46	[{'connected_gene': 'TMEM109', 'score': 0.77}, {'connected_gene': 'GC11P060921', 'score': 0.77}, {'connected_gene': 'GC11M060911', 'score': 0.77}, {'connected_gene': 'ENSG00000256196', 'score': 0.44}]
chr11	GH11I060923	60923829	60925889	1.94	[{'connected_gene': 'TMEM132A', 'score': 550.77}, {'connected_gene': 'ENSG00000256196', 'score': 550.77}, {'connected_gene': 'CPSF7', 'score': 19.58}, {'connected_gene': 'TMEM138', 'score': 16.37}, {'connected_gene': 'RN7SL23P', 'score': 15.65}, {'connected_gene': 'TMEM109', 'score': 11.4}, {'connected_gene': 'RNU6-933P', 'score': 10.52}, {'connected_gene': 'PTGDR2', 'score': 5.22}, {'connected_gene': 'GC11P060921', 'score': 0.77}]
chr11	GH11I060922	60922303	60923354	0.31	[{'connected_gene': 'TMEM132A', 'score': 550.77}, {'connected_gene': 'GC11P060921', 'score': 550.77}, {'connected_gene': 'RNU6-933P', 'score': 10.52}, {'connected_gene': 'ENSG00000256196', 'score': 0.77}, {'connected_gene': 'TMEM109', 'score': 0.44}]
chr11	GH11I061355	61355601	61364150	2.48	[{'connected_gene': 'TMEM138', 'score': 577.07}, {'connected_gene': 'CYB561A3', 'score': 550.77}, {'connected_gene': 'CPSF7', 'score': 31.52}, {'connected_gene': 'PRPF19', 'score': 13.88}, {'connected_gene': 'TMEM216', 'score': 13.0}, {'connected_gene': 'RN7SL23P', 'score': 12.96}, {'connected_gene': 'SDHAF2', 'score': 12.86}, {'connected_gene': 'VPS37C', 'score': 11.01}, {'connected_gene': 'TMEM109', 'score': 9.91}, {'connected_gene': 'ENSG00000279246', 'score': 0.44}]
chr11	GH11I060918	60918647	60920000	0.99	[{'connected_gene': 'SLC15A3', 'score': 11.89}, {'connected_gene': 'CD6', 'score': 11.87}, {'connected_gene': 'GC11P060921', 'score': 0.77}, {'connected_gene': 'GC11M060911', 'score': 0.77}, {'connected_gene': 'TMEM109', 'score': 0.44}, {'connected_gene': 'ENSG00000256196', 'score': 0.44}]