PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr1	14026671	14026705	CAGE_peak_2_at_PRDM2_5end
chr1	14026722	14026733	CAGE_peak_5_at_PRDM2_5end
chr1	14057463	14057496	CAGE_peak_4_at_PRDM2_5end
chr1	14075865	14075896	CAGE_peak_3_at_PRDM2_5end
chr1	14075903	14075940	CAGE_peak_1_at_PRDM2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I013757	13757818	13760659	1.05	[{'connected_gene': 'PRDM2', 'score': 11.78}, {'connected_gene': 'ENSG00000253085', 'score': 11.77}, {'connected_gene': 'GC01M013810', 'score': 0.22}]
chr1	GH01I013727	13727782	13734580	1.45	[{'connected_gene': 'PRDM2', 'score': 28.79}, {'connected_gene': 'ENSG00000253085', 'score': 12.48}, {'connected_gene': 'GC01M013810', 'score': 0.17}]
chr1	GH01I013792	13792006	13793031	0.2	[{'connected_gene': 'PRDM2', 'score': 10.88}, {'connected_gene': 'ENSG00000253085', 'score': 10.87}, {'connected_gene': 'GC01M013810', 'score': 0.34}]
chr1	GH01I013712	13712801	13713600	0.58	[{'connected_gene': 'PRDM2', 'score': 0.39}, {'connected_gene': 'GC01M013810', 'score': 0.15}]
chr1	GH01I013754	13754567	13754976	0.58	[{'connected_gene': 'PRDM2', 'score': 0.23}, {'connected_gene': 'GC01M013810', 'score': 0.21}]
chr1	GH01I013699	13699221	13705309	2.44	[{'connected_gene': 'PRDM2', 'score': 576.07}, {'connected_gene': 'GC01M013810', 'score': 0.14}]
chr1	GH01I013707	13707726	13710349	0.74	[{'connected_gene': 'PRDM2', 'score': 0.44}, {'connected_gene': 'GC01M013810', 'score': 0.14}]
chr1	GH01I013747	13747990	13753071	2.23	[{'connected_gene': 'PRDM2', 'score': 550.23}, {'connected_gene': 'GC01M013810', 'score': 0.2}]
chr1	GH01I013722	13722783	13724600	0.63	[{'connected_gene': 'PRDM2', 'score': 0.34}, {'connected_gene': 'GC01M013810', 'score': 0.16}]
chr1	GH01I013735	13735018	13735768	0.58	[{'connected_gene': 'PRDM2', 'score': 0.28}, {'connected_gene': 'GC01M013810', 'score': 0.18}]
chr1	GH01I013590	13590563	13590818	0.48	[{'connected_gene': 'PDPN', 'score': 2.98}, {'connected_gene': 'PRDM2', 'score': 2.51}, {'connected_gene': 'RNA5SP41', 'score': 0.29}]
chr1	GH01I013604	13604814	13605800	1.21	[{'connected_gene': 'PDPN', 'score': 14.09}, {'connected_gene': 'LRRC38', 'score': 10.32}, {'connected_gene': 'PRDM2', 'score': 2.82}, {'connected_gene': 'RNA5SP41', 'score': 0.37}]
chr1	GH01I013623	13623338	13623658	0.22	[{'connected_gene': 'RNA5SP41', 'score': 550.77}, {'connected_gene': 'PDPN', 'score': 3.8}, {'connected_gene': 'PRDM2', 'score': 2.94}, {'connected_gene': 'GC01P013657', 'score': 0.29}]
chr1	GH01I013724	13724762	13726200	0.99	[{'connected_gene': 'ENSG00000253085', 'score': 12.5}, {'connected_gene': 'PRDM2', 'score': 12.5}, {'connected_gene': 'GC01M013810', 'score': 0.16}]
chr1	GH01I013766	13766154	13767979	0.86	[{'connected_gene': 'GC01M013810', 'score': 0.25}, {'connected_gene': 'PRDM2', 'score': 0.2}]
chr1	GH01I013765	13765066	13765215	0.66	[{'connected_gene': 'GC01M013810', 'score': 0.23}, {'connected_gene': 'PRDM2', 'score': 0.21}]
chr1	GH01I013764	13764116	13764801	0.83	[{'connected_gene': 'GC01M013810', 'score': 0.23}, {'connected_gene': 'PRDM2', 'score': 0.21}]
chr1	GH01I013774	13774851	13774875	0.4	[{'connected_gene': 'GC01M013810', 'score': 0.26}, {'connected_gene': 'PRDM2', 'score': 0.19}]
chr1	GH01I013798	13798466	13799323	0.79	[{'connected_gene': 'GC01M013810', 'score': 0.37}, {'connected_gene': 'PRDM2', 'score': 0.15}]
chr1	GH01I013775	13774905	13776240	0.4	[{'connected_gene': 'GC01M013810', 'score': 0.26}, {'connected_gene': 'PRDM2', 'score': 0.18}]
chr1	GH01I013780	13780448	13783599	0.92	[{'connected_gene': 'GC01M013810', 'score': 0.29}, {'connected_gene': 'PRDM2', 'score': 0.18}]
chr1	GH01I013800	13800920	13802256	0.56	[{'connected_gene': 'GC01M013810', 'score': 0.39}, {'connected_gene': 'PRDM2', 'score': 0.15}]
chr1	GH01I013768	13768404	13772684	0.65	[{'connected_gene': 'GC01M013810', 'score': 0.25}, {'connected_gene': 'PRDM2', 'score': 0.19}]
chr1	GH01I013762	13762801	13763000	0.58	[{'connected_gene': 'GC01M013810', 'score': 0.23}, {'connected_gene': 'PRDM2', 'score': 0.21}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000484063	[[14026692, 14026795], [14042035, 14042109], [14057494, 14057612], [14059273, 14059350], [14068499, 14068652], [14075855, 14075958]]	[[14042100, 14042109], [14057494, 14057612], [14059273, 14059350], [14068499, 14068652], [14075855, 14075958]]
ENST00000376048	[[14026734, 14026795], [14042035, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14142921, 14143065], [14149653, 14151560]]	[[14042100, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14142921, 14143065], [14149653, 14149679]]
ENST00000311066	[[14031349, 14032140], [14042035, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683], [14104912, 14109326], [14113009, 14114554]]	[[14042100, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683], [14104912, 14109326], [14113009, 14113022]]
ENST00000235372	[[14031349, 14032140], [14042035, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683], [14104912, 14109326], [14142921, 14143065], [14149653, 14151574]]	[[14042100, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683], [14104912, 14109326], [14142921, 14143042]]
ENST00000491134	[[14057512, 14057612], [14068499, 14068652], [14075855, 14075982], [14095612, 14095668], [14099572, 14099683], [14113009, 14113562]]	[[14057512, 14057612], [14068499, 14068534]]
ENST00000502727	[[14065244, 14065435], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683]]	None
ENST00000502724	[[14065279, 14065435], [14068499, 14068652], [14075855, 14075982], [14095612, 14095668], [14099572, 14099621]]	None
ENST00000413440	[[14075897, 14075982], [14099572, 14099683], [14104912, 14109326], [14113009, 14114574]]	[[14099664, 14099683], [14104912, 14109326], [14113009, 14113022]]
ENST00000343137	[[14075909, 14075982], [14095612, 14095668], [14099572, 14099683], [14104912, 14109326], [14113009, 14114152]]	[[14099664, 14099683], [14104912, 14109326], [14113009, 14113022]]
ENST00000491815	[[14075918, 14075982], [14099572, 14100166]]	None
ENST00000503842	[[14075929, 14075982], [14095612, 14095668], [14099572, 14099683], [14142921, 14143065], [14149653, 14149994]]	[[14099664, 14099683], [14142921, 14143065], [14149653, 14149679]]
ENST00000407521	[[14075930, 14075982], [14095533, 14095668], [14099572, 14099683], [14104912, 14105127]]	[[14099664, 14099683], [14104912, 14105127]]
ENST00000505823	[[14075930, 14075982], [14099572, 14099683], [14142921, 14143065], [14149653, 14149914]]	[[14099664, 14099683], [14142921, 14143065], [14149653, 14149679]]
ENST00000487453	[[14098220, 14098709], [14099572, 14099683], [14104912, 14104958]]	[[14099664, 14099683], [14104912, 14104958]]
NM_001135610	[[14026734, 14026795], [14042035, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14142921, 14143065], [14149653, 14151574]]	[[14042100, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14142921, 14143065], [14149653, 14149679]]
NM_015866	[[14031349, 14032140], [14042035, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683], [14104912, 14109326], [14113009, 14114574]]	[[14042100, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683], [14104912, 14109326], [14113009, 14113022]]
NM_012231	[[14031349, 14032140], [14042035, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683], [14104912, 14109326], [14142921, 14143065], [14149653, 14151574]]	[[14042100, 14042109], [14057494, 14057612], [14059273, 14059377], [14068499, 14068652], [14075855, 14075982], [14099572, 14099683], [14104912, 14109326], [14142921, 14143042]]
NM_001007257	[[14075875, 14075982], [14099572, 14099683], [14104912, 14109326], [14113009, 14114574]]	[[14099664, 14099683], [14104912, 14109326], [14113009, 14113022]]