PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000418342	[[23410515, 23415546], [23417682, 23420873], [23435514, 23435701], [23495258, 23495351]]	[[23415387, 23415546], [23417682, 23420754]]
ENST00000302291	[[23410522, 23415546], [23417682, 23420873], [23435514, 23435620], [23495258, 23495517], [23503983, 23504301]]	[[23415387, 23415546], [23417682, 23420754]]
ENST00000314174	[[23416919, 23417391], [23417682, 23420873], [23495258, 23495310]]	[[23417382, 23417391], [23417682, 23420754]]
ENST00000471849	[[23419935, 23420873], [23435514, 23435620], [23436077, 23436143], [23495258, 23495338]]	[[23419935, 23420754]]
ENST00000374623	[[23410515, 23415546], [23417682, 23420873], [23435514, 23435623]]	[[23415387, 23415546], [23417682, 23420754]]
ENST00000475164	[[23420647, 23420873], [23435514, 23435620], [23436077, 23436143], [23459957, 23460172]]	[[23420647, 23420754]]
NM_033631	[[23410515, 23415546], [23417682, 23420873], [23435514, 23435620], [23436077, 23436143], [23495258, 23495351]]	[[23415387, 23415546], [23417682, 23420754]]
NM_001142546	[[23410515, 23415546], [23417682, 23420873], [23435514, 23435620], [23495258, 23495351]]	[[23415387, 23415546], [23417682, 23420754]]

Promoter

Chrom	Start	End	Description
chr1	23495303	23495338	CAGE_peak_1_at_LUZP1_5end
chr1	23495340	23495357	CAGE_peak_2_at_LUZP1_5end
chr1	23504156	23504173	CAGE_peak_13_at_LUZP1_5end
chr1	23504176	23504203	CAGE_peak_7_at_LUZP1_5end
chr1	23504597	23504621	CAGE_peak_3_at_LUZP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I023060	23060986	23061301	0.22	[{'connected_gene': 'LUZP1', 'score': 11.08}, {'connected_gene': 'LACTBL1', 'score': 10.07}, {'connected_gene': 'ZNF436', 'score': 1.25}, {'connected_gene': 'MIR4419A', 'score': 0.77}, {'connected_gene': 'GC01M023078', 'score': 0.37}, {'connected_gene': 'ENSG00000240553', 'score': 0.31}, {'connected_gene': 'KDM1A', 'score': 0.26}]
chr1	GH01I023176	23176928	23178887	1.65	[{'connected_gene': 'LUZP1', 'score': 563.48}, {'connected_gene': 'LACTBL1', 'score': 7.35}, {'connected_gene': 'HTR1D', 'score': 0.37}]
chr1	GH01I023282	23282573	23284617	0.97	[{'connected_gene': 'LUZP1', 'score': 10.81}, {'connected_gene': 'LACTBL1', 'score': 10.36}, {'connected_gene': 'LINC01355', 'score': 0.77}, {'connected_gene': 'GC01P023265', 'score': 0.37}]
chr1	GH01I023210	23210348	23210517	0.62	[{'connected_gene': 'LUZP1', 'score': 10.59}, {'connected_gene': 'HTR1D', 'score': 0.37}, {'connected_gene': 'RPL29P6', 'score': 0.29}]
chr1	GH01I023179	23179108	23179257	0.82	[{'connected_gene': 'LUZP1', 'score': 550.77}, {'connected_gene': 'HTR1D', 'score': 0.37}]
chr1	GH01I023166	23166076	23170599	2.25	[{'connected_gene': 'LUZP1', 'score': 563.06}, {'connected_gene': 'GC01P023167', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 35.02}, {'connected_gene': 'ZBTB40', 'score': 24.74}, {'connected_gene': 'PNRC2', 'score': 24.28}, {'connected_gene': 'RPL11', 'score': 23.57}, {'connected_gene': 'LINC01355', 'score': 22.89}, {'connected_gene': 'HNRNPR', 'score': 22.4}, {'connected_gene': 'ELOA', 'score': 19.59}, {'connected_gene': 'LACTBL1', 'score': 9.72}]
chr1	GH01I023105	23105247	23105306	0.5	[{'connected_gene': 'LUZP1', 'score': 562.51}, {'connected_gene': 'RNU6-135P', 'score': 11.9}, {'connected_gene': 'RNU6-514P', 'score': 11.9}, {'connected_gene': 'LACTBL1', 'score': 6.82}, {'connected_gene': 'GC01M023095', 'score': 0.44}, {'connected_gene': 'ENSG00000229010', 'score': 0.28}]
chr1	GH01I023110	23110074	23112034	0.88	[{'connected_gene': 'LUZP1', 'score': 17.93}, {'connected_gene': 'RNU6-135P', 'score': 12.25}, {'connected_gene': 'RNU6-514P', 'score': 12.25}, {'connected_gene': 'GC01M023095', 'score': 0.39}, {'connected_gene': 'ENSG00000229010', 'score': 0.31}]
chr1	GH01I023112	23112201	23112400	0.43	[{'connected_gene': 'LUZP1', 'score': 12.23}, {'connected_gene': 'RNU6-135P', 'score': 12.0}, {'connected_gene': 'RNU6-514P', 'score': 12.0}, {'connected_gene': 'GC01M023095', 'score': 0.39}, {'connected_gene': 'ENSG00000229010', 'score': 0.31}]
chr1	GH01I023098	23098450	23105227	1.7	[{'connected_gene': 'LUZP1', 'score': 24.48}, {'connected_gene': 'LINC01355', 'score': 19.56}, {'connected_gene': 'SRSF10', 'score': 15.68}, {'connected_gene': 'HNRNPR', 'score': 12.03}, {'connected_gene': 'RNU6-135P', 'score': 11.89}, {'connected_gene': 'RNU6-514P', 'score': 11.89}, {'connected_gene': 'LACTBL1', 'score': 11.03}, {'connected_gene': 'GC01M023095', 'score': 0.77}, {'connected_gene': 'ENSG00000229010', 'score': 0.28}]
chr1	GH01I023122	23122124	23124491	1.05	[{'connected_gene': 'LUZP1', 'score': 12.04}, {'connected_gene': 'ENSG00000229010', 'score': 0.37}, {'connected_gene': 'GC01M023095', 'score': 0.31}]
chr1	GH01I023113	23113927	23116396	1.37	[{'connected_gene': 'LUZP1', 'score': 5.39}, {'connected_gene': 'GC01M023095', 'score': 0.37}, {'connected_gene': 'ENSG00000229010', 'score': 0.31}]
chr1	GH01I022625	22625302	22628424	0.59	[{'connected_gene': 'C1QB', 'score': 5.15}, {'connected_gene': 'LUZP1', 'score': 4.39}, {'connected_gene': 'MIR6127', 'score': 0.44}, {'connected_gene': 'EPHA8', 'score': 0.21}]
chr1	GH01I023118	23118597	23120590	1.14	[{'connected_gene': 'TCEA3', 'score': 8.88}, {'connected_gene': 'LACTBL1', 'score': 7.14}, {'connected_gene': 'LUZP1', 'score': 5.88}, {'connected_gene': 'GC01M023095', 'score': 0.34}, {'connected_gene': 'ENSG00000229010', 'score': 0.34}]
chr1	GH01I023187	23187340	23190546	1.34	[{'connected_gene': 'LACTBL1', 'score': 17.11}, {'connected_gene': 'LUZP1', 'score': 12.79}, {'connected_gene': 'RNU6-135P', 'score': 11.12}, {'connected_gene': 'RNU6-514P', 'score': 11.09}, {'connected_gene': 'HTR1D', 'score': 5.75}]
chr1	GH01I022976	22976001	22977303	1.12	[{'connected_gene': 'LACTBL1', 'score': 12.57}, {'connected_gene': 'LUZP1', 'score': 5.57}, {'connected_gene': 'GC01P022984', 'score': 0.44}]
chr1	GH01I022273	22273585	22276221	0.68	[{'connected_gene': 'WNT4', 'score': 10.92}, {'connected_gene': 'LUZP1', 'score': 4.23}, {'connected_gene': 'MIR4418', 'score': 0.44}, {'connected_gene': 'PPIAP34', 'score': 0.25}]
chr1	GH01I023193	23193019	23199351	1.99	[{'connected_gene': 'HTR1D', 'score': 558.68}, {'connected_gene': 'SRSF10', 'score': 14.49}, {'connected_gene': 'ZBTB40', 'score': 14.4}, {'connected_gene': 'PNRC2', 'score': 13.05}, {'connected_gene': 'RPL11', 'score': 12.54}, {'connected_gene': 'RNU6-135P', 'score': 10.96}, {'connected_gene': 'RNU6-514P', 'score': 10.96}, {'connected_gene': 'ELOA', 'score': 10.89}, {'connected_gene': 'LUZP1', 'score': 10.35}, {'connected_gene': 'LACTBL1', 'score': 7.37}, {'connected_gene': 'RPL29P6', 'score': 0.25}]
chr1	GH01I023224	23224450	23225891	0.84	[{'connected_gene': 'KDM1A', 'score': 10.05}, {'connected_gene': 'LACTBL1', 'score': 10.0}, {'connected_gene': 'LUZP1', 'score': 7.53}, {'connected_gene': 'HTR1D', 'score': 5.69}, {'connected_gene': 'RPL29P6', 'score': 0.37}]
chr1	GH01I023129	23129594	23130557	0.31	[{'connected_gene': 'RNU6-135P', 'score': 12.54}, {'connected_gene': 'RNU6-514P', 'score': 12.54}, {'connected_gene': 'LUZP1', 'score': 11.85}, {'connected_gene': 'LACTBL1', 'score': 9.96}, {'connected_gene': 'ENSG00000229010', 'score': 0.39}, {'connected_gene': 'GC01M023095', 'score': 0.29}]
chr1	GH01I023126	23126104	23127523	0.58	[{'connected_gene': 'RNU6-135P', 'score': 12.52}, {'connected_gene': 'RNU6-514P', 'score': 12.52}, {'connected_gene': 'LUZP1', 'score': 11.84}, {'connected_gene': 'LACTBL1', 'score': 9.96}, {'connected_gene': 'ENSG00000229010', 'score': 0.39}, {'connected_gene': 'GC01M023095', 'score': 0.31}]
chr1	GH01I023184	23184555	23185008	0.95	[{'connected_gene': 'RNU6-135P', 'score': 11.52}, {'connected_gene': 'RNU6-514P', 'score': 11.52}, {'connected_gene': 'TEX46', 'score': 10.21}, {'connected_gene': 'KDM1A', 'score': 10.21}, {'connected_gene': 'LACTBL1', 'score': 9.93}, {'connected_gene': 'LUZP1', 'score': 7.19}, {'connected_gene': 'HTR1D', 'score': 0.44}]
chr1	GH01I023124	23124596	23124687	0.63	[{'connected_gene': 'ENSG00000229010', 'score': 0.37}, {'connected_gene': 'GC01M023095', 'score': 0.31}, {'connected_gene': 'LUZP1', 'score': 0.23}]
chr1	GH01I023159	23159519	23161771	0.57	[{'connected_gene': 'GC01P023166', 'score': 0.77}, {'connected_gene': 'LUZP1', 'score': 0.37}, {'connected_gene': 'ENSG00000229010', 'score': 0.34}]
chr1	GH01I023147	23147894	23149771	0.8	[{'connected_gene': 'ENSG00000229010', 'score': 0.44}, {'connected_gene': 'GC01P023166', 'score': 0.39}, {'connected_gene': 'LUZP1', 'score': 0.31}]