PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000336139	[[123594884, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601693], [123611100, 123611244], [123612256, 123612378]]	[[123596704, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601596]]
ENST00000530393	[[123595487, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601693], [123610824, 123610900], [123611124, 123611244], [123612256, 123612363]]	[[123596704, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601596]]
ENST00000529691	[[123595487, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601693], [123612256, 123612379]]	[[123596704, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601596]]
ENST00000533463	[[123601217, 123601693], [123610824, 123610940], [123611100, 123611244], [123612256, 123612375]]	[[123601217, 123601596]]
ENST00000528306	[[123601459, 123601693], [123610824, 123610897], [123611124, 123611244], [123612256, 123612381]]	[[123601459, 123601596]]
ENST00000529250	[[123601515, 123601693], [123610824, 123610940], [123611124, 123611244], [123612256, 123612383]]	None
ENST00000526252	[[123601565, 123601693], [123610141, 123610251], [123610824, 123610940], [123611100, 123611244], [123612256, 123612322]]	[[123601565, 123601596]]
ENST00000530944	[[123601567, 123601631], [123610835, 123611244], [123612256, 123612368]]	None
ENST00000525391	[[123609331, 123609618], [123610824, 123610940], [123611124, 123611244], [123612256, 123612373]]	None
NM_001301819	[[123594634, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601198, 123601693]]	[[123596704, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599863]]
NM_001301779	[[123594634, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601693], [123611100, 123611244], [123612256, 123612391]]	[[123596704, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601596]]
NM_003455	[[123594634, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601693], [123610824, 123610900], [123611124, 123611244], [123612256, 123612391]]	[[123596704, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601596]]
NM_001301780	[[123594634, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601693], [123612256, 123612391]]	[[123596704, 123597699], [123598183, 123598303], [123598840, 123598970], [123599833, 123599922], [123600322, 123600533], [123601194, 123601596]]

Promoter

Chrom	Start	End	Description
chr11	123612319	123612395	CAGE_peak_1_at_ZNF202_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I122841	122841671	122846244	1.24	[{'connected_gene': 'ZNF202', 'score': 17.15}, {'connected_gene': 'JHY', 'score': 15.71}, {'connected_gene': 'CRTAM', 'score': 7.07}, {'connected_gene': 'GC11P122841', 'score': 0.77}]
chr11	GH11I123740	123740154	123743992	2.29	[{'connected_gene': 'ZNF202', 'score': 594.72}, {'connected_gene': 'CLMP', 'score': 12.14}, {'connected_gene': 'OR6X1', 'score': 10.37}, {'connected_gene': 'OR10G7', 'score': 9.76}, {'connected_gene': 'OR6M1', 'score': 8.28}, {'connected_gene': 'OR10G4', 'score': 8.23}, {'connected_gene': 'OR8G2P', 'score': 6.79}, {'connected_gene': 'OR4D5', 'score': 6.56}, {'connected_gene': 'TMEM225', 'score': 5.88}, {'connected_gene': 'OR6T1', 'score': 5.33}, {'connected_gene': 'OR8D4', 'score': 2.95}, {'connected_gene': 'OR10S1', 'score': 1.43}]
chr11	GH11I124642	124642816	124645294	1.35	[{'connected_gene': 'ZNF202', 'score': 33.22}, {'connected_gene': 'MSANTD2', 'score': 28.67}, {'connected_gene': 'TMEM218', 'score': 25.22}, {'connected_gene': 'STT3A', 'score': 20.31}, {'connected_gene': 'ENSG00000254509', 'score': 14.26}, {'connected_gene': 'SPA17', 'score': 12.06}, {'connected_gene': 'OR8A1', 'score': 3.11}, {'connected_gene': 'OR8B4', 'score': 2.92}, {'connected_gene': 'OR8D1', 'score': 2.37}, {'connected_gene': 'OR8G1', 'score': 1.48}, {'connected_gene': 'OR8D2', 'score': 1.32}, {'connected_gene': 'OR8B12', 'score': 1.31}, {'connected_gene': 'OR8B8', 'score': 1.19}, {'connected_gene': 'RNA5SP352', 'score': 0.44}, {'connected_gene': 'SIAE', 'score': 0.23}]
chr11	GH11I123972	123972957	123975207	0.38	[{'connected_gene': 'ZNF202', 'score': 5.67}, {'connected_gene': 'NRGN', 'score': 4.74}, {'connected_gene': 'ROBO4', 'score': 4.51}, {'connected_gene': 'GC11M123977', 'score': 0.77}, {'connected_gene': 'GC11P123969', 'score': 0.77}, {'connected_gene': 'OR6T1', 'score': 0.37}]
chr11	GH11I123773	123773930	123778508	0.79	[{'connected_gene': 'ZNF202', 'score': 22.35}, {'connected_gene': 'OR6X1', 'score': 11.06}, {'connected_gene': 'OR6M1', 'score': 10.96}, {'connected_gene': 'TMEM225', 'score': 10.32}, {'connected_gene': 'OR8D4', 'score': 9.66}, {'connected_gene': 'RNU1-21P', 'score': 0.39}, {'connected_gene': 'LOC105369544', 'score': 0.34}]
chr11	GH11I123745	123745554	123747277	0.71	[{'connected_gene': 'ZNF202', 'score': 45.34}, {'connected_gene': 'OR6X1', 'score': 0.44}]
chr11	GH11I123039	123039597	123040834	0.43	[{'connected_gene': 'ZNF202', 'score': 16.8}, {'connected_gene': 'BSX', 'score': 11.27}, {'connected_gene': 'JHY', 'score': 10.93}, {'connected_gene': 'RPL34P23', 'score': 0.77}, {'connected_gene': 'RPS26P43', 'score': 0.39}]
chr11	GH11I123799	123799061	123802186	0.52	[{'connected_gene': 'ZNF202', 'score': 11.85}, {'connected_gene': 'TMEM225', 'score': 7.89}, {'connected_gene': 'LOC105369544', 'score': 0.77}, {'connected_gene': 'OR6M1', 'score': 0.44}]
chr11	GH11I123234	123234720	123236343	1.12	[{'connected_gene': 'ZNF202', 'score': 46.39}, {'connected_gene': 'ATP5PBP5', 'score': 11.63}, {'connected_gene': 'ENSG00000254710', 'score': 11.5}, {'connected_gene': 'CLMP', 'score': 11.27}, {'connected_gene': 'GC11P123228', 'score': 0.44}, {'connected_gene': 'GC11M123292', 'score': 0.22}]
chr11	GH11I124078	124078376	124081724	1.24	[{'connected_gene': 'VWA5A', 'score': 72.95}, {'connected_gene': 'ZNF202', 'score': 17.53}, {'connected_gene': 'SPA17', 'score': 5.41}, {'connected_gene': 'OR8G2P', 'score': 1.83}, {'connected_gene': 'OR8B12', 'score': 1.47}, {'connected_gene': 'OR8D1', 'score': 1.32}, {'connected_gene': 'OR8A1', 'score': 1.23}, {'connected_gene': 'LOC105369545', 'score': 0.44}, {'connected_gene': 'GC11M124060', 'score': 0.39}]
chr11	GH11I123774	123773193	123773342	0.2	[{'connected_gene': 'OR6M1', 'score': 10.66}, {'connected_gene': 'ZNF202', 'score': 10.35}, {'connected_gene': 'TMEM225', 'score': 10.31}, {'connected_gene': 'OR8D4', 'score': 9.66}, {'connected_gene': 'RNU1-21P', 'score': 0.44}, {'connected_gene': 'LOC105369544', 'score': 0.34}]
chr11	GH11I123786	123786223	123787268	0.31	[{'connected_gene': 'OR6X1', 'score': 10.86}, {'connected_gene': 'OR8D4', 'score': 9.88}, {'connected_gene': 'ZNF202', 'score': 4.87}, {'connected_gene': 'LOC105369544', 'score': 0.39}, {'connected_gene': 'RNU1-21P', 'score': 0.34}]
chr11	GH11I123695	123695138	123695529	0.23	[{'connected_gene': 'OR6X1', 'score': 15.73}, {'connected_gene': 'OR8D4', 'score': 15.11}, {'connected_gene': 'OR10G4', 'score': 13.71}, {'connected_gene': 'OR4D5', 'score': 13.51}, {'connected_gene': 'OR10G7', 'score': 13.18}, {'connected_gene': 'SCN3B', 'score': 11.08}, {'connected_gene': 'ZNF202', 'score': 10.13}, {'connected_gene': 'OR6M1', 'score': 9.37}, {'connected_gene': 'OR6T1', 'score': 6.89}, {'connected_gene': 'OR10G9', 'score': 1.72}, {'connected_gene': 'OR10S1', 'score': 1.53}, {'connected_gene': 'GC11P123730', 'score': 0.28}]
chr11	GH11I124224	124224555	124225645	0.97	[{'connected_gene': 'OR8G2P', 'score': 550.77}, {'connected_gene': 'GC11P124227', 'score': 550.77}, {'connected_gene': 'VWA5A', 'score': 23.29}, {'connected_gene': 'MSANTD2', 'score': 20.59}, {'connected_gene': 'ZNF202', 'score': 18.79}, {'connected_gene': 'TMEM218', 'score': 14.66}, {'connected_gene': 'ENSG00000254509', 'score': 14.18}, {'connected_gene': 'LOC102724410', 'score': 0.77}]
chr11	GH11I123977	123977113	123979145	0.6	[{'connected_gene': 'OR10S1', 'score': 550.77}, {'connected_gene': 'GC11M123977', 'score': 550.77}, {'connected_gene': 'ZNF202', 'score': 5.24}, {'connected_gene': 'OR6T1', 'score': 0.37}]
chr11	GH11I123055	123055673	123066551	2.28	[{'connected_gene': 'PIR56485', 'score': 550.77}, {'connected_gene': 'PIR53037', 'score': 550.77}, {'connected_gene': 'GC11M123095', 'score': 550.77}, {'connected_gene': 'HSPA8', 'score': 550.77}, {'connected_gene': 'SNORD14C', 'score': 550.77}, {'connected_gene': 'LOC101929289', 'score': 550.77}, {'connected_gene': 'GC11M123091', 'score': 550.77}, {'connected_gene': 'ZNF202', 'score': 73.39}, {'connected_gene': 'CLMP', 'score': 12.22}, {'connected_gene': 'SNORD14E', 'score': 0.77}, {'connected_gene': 'GC11M123094', 'score': 0.77}, {'connected_gene': 'GC11M123093', 'score': 0.77}, {'connected_gene': 'SNORD14D', 'score': 0.77}]