PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000317995	[[61099905, 61102544], [61121308, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193971]]	[[61121343, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193706]]
ENST00000524872	[[61120629, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193944]]	None
ENST00000528666	[[61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61145043, 61145232]]	None
ENST00000529918	[[61177380, 61178608], [61192247, 61192439], [61193606, 61193883]]	None
NR_135821	[[61097978, 61102544], [61121308, 61121478], [61134866, 61134916], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193982]]	None
NM_004056	[[61097978, 61102544], [61121308, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193982]]	[[61121343, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193706]]
NM_001321839	[[61097978, 61102544], [61121308, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61178483, 61178608], [61192247, 61192439], [61193606, 61193982]]	[[61121343, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61178483, 61178608], [61192247, 61192439], [61193606, 61193706]]
NM_001321838	[[61118583, 61121478], [61134866, 61134916], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193982]]	[[61121474, 61121478], [61134866, 61134916], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193706]]
NM_001321837	[[61118583, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193982]]	[[61121343, 61121478], [61135207, 61135320], [61137095, 61137144], [61139431, 61139494], [61144842, 61144938], [61178483, 61178608], [61192247, 61192439], [61193606, 61193706]]

Promoter

Chrom	Start	End	Description
chr8	61193947	61193965	CAGE_peak_1_at_CA8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I060238	60238642	60238791	0.2	[{'connected_gene': 'CA8', 'score': 11.22}, {'connected_gene': 'PIR40544', 'score': 0.37}, {'connected_gene': 'SLC2A13P1', 'score': 0.15}]
chr8	GH08I060239	60238122	60238411	0.63	[{'connected_gene': 'CA8', 'score': 26.7}, {'connected_gene': 'PIR40544', 'score': 0.37}, {'connected_gene': 'SLC2A13P1', 'score': 0.15}]
chr8	GH08I060197	60197054	60198795	0.49	[{'connected_gene': 'CA8', 'score': 10.23}, {'connected_gene': 'PIR40544', 'score': 0.22}, {'connected_gene': 'SLC2A13P1', 'score': 0.22}]
chr8	GH08I060237	60237838	60238103	0.52	[{'connected_gene': 'CA8', 'score': 11.22}, {'connected_gene': 'PIR40544', 'score': 0.37}, {'connected_gene': 'SLC2A13P1', 'score': 0.15}]
chr8	GH08I060330	60330362	60330511	0.85	[{'connected_gene': 'CA8', 'score': 0.25}, {'connected_gene': 'PIR50018', 'score': 0.25}, {'connected_gene': 'LOC105375864', 'score': 0.23}]
chr8	GH08I060286	60286202	60286328	0.49	[{'connected_gene': 'CA8', 'score': 0.77}, {'connected_gene': 'GC08P060266', 'score': 0.37}, {'connected_gene': 'PIR50018', 'score': 0.17}, {'connected_gene': 'LOC105375864', 'score': 0.15}]
chr8	GH08I060225	60225286	60227096	0.46	[{'connected_gene': 'CA8', 'score': 11.0}, {'connected_gene': 'LINC01301', 'score': 5.02}, {'connected_gene': 'PIR40544', 'score': 0.29}, {'connected_gene': 'SLC2A13P1', 'score': 0.18}]
chr8	GH08I060233	60233322	60233511	0.56	[{'connected_gene': 'CA8', 'score': 10.67}, {'connected_gene': 'LINC01301', 'score': 4.81}, {'connected_gene': 'PIR40544', 'score': 0.34}, {'connected_gene': 'SLC2A13P1', 'score': 0.16}]
chr8	GH08I060236	60236422	60237634	0.65	[{'connected_gene': 'CA8', 'score': 16.25}, {'connected_gene': 'LINC01301', 'score': 4.99}, {'connected_gene': 'PIR40544', 'score': 0.37}, {'connected_gene': 'SLC2A13P1', 'score': 0.15}]
chr8	GH08I060396	60396962	60397111	0.68	[{'connected_gene': 'CA8', 'score': 10.58}, {'connected_gene': 'GC08M060388', 'score': 0.44}, {'connected_gene': 'GC08M060401', 'score': 0.37}, {'connected_gene': 'LINC01301', 'score': 0.13}]
chr8	GH08I060397	60396302	60396451	0.31	[{'connected_gene': 'CA8', 'score': 10.44}, {'connected_gene': 'GC08M060388', 'score': 0.44}, {'connected_gene': 'GC08M060401', 'score': 0.37}, {'connected_gene': 'LINC01301', 'score': 0.13}]
chr8	GH08I060277	60277797	60278750	0.64	[{'connected_gene': 'CA8', 'score': 10.81}, {'connected_gene': 'GC08M060274', 'score': 0.77}, {'connected_gene': 'GC08P060266', 'score': 0.39}]
chr8	GH08I060280	60280413	60282400	1.99	[{'connected_gene': 'CA8', 'score': 566.49}, {'connected_gene': 'GC08M060274', 'score': 0.44}, {'connected_gene': 'GC08P060266', 'score': 0.39}]
chr8	GH08I060210	60210132	60211896	0.38	[{'connected_gene': 'LINC01301', 'score': 3.98}, {'connected_gene': 'PIR40544', 'score': 0.25}, {'connected_gene': 'SLC2A13P1', 'score': 0.2}, {'connected_gene': 'CA8', 'score': 0.19}]
chr8	GH08I060375	60375042	60375131	0.2	[{'connected_gene': 'PIR50018', 'score': 550.77}, {'connected_gene': 'CA8', 'score': 11.59}, {'connected_gene': 'GC08M060374', 'score': 0.44}, {'connected_gene': 'LOC105375864', 'score': 0.39}]
chr8	GH08I060650	60650788	60654386	1.8	[{'connected_gene': 'ENSG00000254869', 'score': 550.77}, {'connected_gene': 'CHD7', 'score': 15.26}, {'connected_gene': 'RAB2A', 'score': 14.44}, {'connected_gene': 'CLVS1', 'score': 10.43}, {'connected_gene': 'ENSG00000255321', 'score': 9.99}, {'connected_gene': 'CA8', 'score': 1.18}, {'connected_gene': 'ENSG00000228862', 'score': 0.37}]