PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000298299	[[45495922, 45496426], [45498727, 45500774]]	[[45498816, 45499491]]
NM_006963	[[45496272, 45496426], [45498727, 45500777]]	[[45498816, 45499491]]

Promoter

Chrom	Start	End	Description
chr10	45495709	45495725	CAGE_peak_5_at_ZNF22_5end
chr10	45495898	45495907	CAGE_peak_8_at_ZNF22_5end
chr10	45495946	45495976	CAGE_peak_2_at_ZNF22_5end
chr10	45496320	45496336	CAGE_peak_3_at_ZNF22_5end
chr10	45496346	45496409	CAGE_peak_1_at_ZNF22_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I044957	44957669	44969963	2.52	[{'connected_gene': 'RASSF4', 'score': 558.78}, {'connected_gene': 'WASHC2C', 'score': 36.95}, {'connected_gene': 'TMEM72-AS1', 'score': 24.31}, {'connected_gene': 'ZNF22', 'score': 16.47}, {'connected_gene': 'AGAP4', 'score': 15.32}, {'connected_gene': 'C10orf25', 'score': 13.01}, {'connected_gene': 'ENSG00000223462', 'score': 12.97}, {'connected_gene': 'ENSG00000234504', 'score': 11.77}, {'connected_gene': 'TMEM72', 'score': 10.31}, {'connected_gene': 'CEP164P1', 'score': 6.66}, {'connected_gene': 'ALOX5', 'score': 2.41}, {'connected_gene': 'OR13A1', 'score': 1.49}, {'connected_gene': 'ENSG00000273363', 'score': 0.77}, {'connected_gene': 'GC10M044957', 'score': 0.77}, {'connected_gene': 'LOC105378281', 'score': 0.44}]
chr10	GH10I044925	44925474	44925879	0.74	[{'connected_gene': 'RASSF4', 'score': 11.04}, {'connected_gene': 'TMEM72-AS1', 'score': 11.04}, {'connected_gene': 'ZNF22', 'score': 10.94}, {'connected_gene': 'C10orf25', 'score': 10.93}, {'connected_gene': 'TMEM72', 'score': 1.78}, {'connected_gene': 'ALOX5', 'score': 1.17}, {'connected_gene': 'ENSG00000234504', 'score': 0.44}, {'connected_gene': 'ENSG00000223462', 'score': 0.39}]
chr10	GH10I044927	44927060	44928020	0.85	[{'connected_gene': 'RASSF4', 'score': 11.55}, {'connected_gene': 'TMEM72-AS1', 'score': 11.55}, {'connected_gene': 'C10orf25', 'score': 10.94}, {'connected_gene': 'ZNF22', 'score': 10.94}, {'connected_gene': 'TMEM72', 'score': 10.0}, {'connected_gene': 'ALOX5', 'score': 1.33}, {'connected_gene': 'ENSG00000234504', 'score': 0.44}, {'connected_gene': 'ENSG00000223462', 'score': 0.44}]
chr10	GH10I044010	44010646	44011847	0.94	[{'connected_gene': 'ZNF22', 'score': 4.66}, {'connected_gene': 'CSGALNACT2', 'score': 4.33}, {'connected_gene': 'PIR37397', 'score': 0.15}, {'connected_gene': 'ENSG00000237590', 'score': 0.07}]
chr10	GH10I044945	44945708	44950936	1.22	[{'connected_gene': 'TMEM72', 'score': 20.24}, {'connected_gene': 'C10orf25', 'score': 10.9}, {'connected_gene': 'ZNF22', 'score': 10.9}, {'connected_gene': 'RASSF4', 'score': 7.14}, {'connected_gene': 'ENSG00000227683', 'score': 5.25}, {'connected_gene': 'TMEM72-AS1', 'score': 4.68}, {'connected_gene': 'RSU1P2', 'score': 4.58}, {'connected_gene': 'ALOX5', 'score': 4.33}, {'connected_gene': 'ENSG00000223462', 'score': 0.39}]
chr10	GH10I044932	44932553	44933200	1.03	[{'connected_gene': 'TMEM72-AS1', 'score': 16.29}, {'connected_gene': 'RASSF4', 'score': 11.77}, {'connected_gene': 'C10orf25', 'score': 10.88}, {'connected_gene': 'ZNF22', 'score': 10.88}, {'connected_gene': 'ENSG00000223462', 'score': 0.77}, {'connected_gene': 'ENSG00000234504', 'score': 0.39}, {'connected_gene': 'TMEM72', 'score': 0.34}]
chr10	GH10I044926	44925273	44925462	0.65	[{'connected_gene': 'TMEM72-AS1', 'score': 11.04}, {'connected_gene': 'RASSF4', 'score': 11.04}, {'connected_gene': 'C10orf25', 'score': 10.93}, {'connected_gene': 'ZNF22', 'score': 10.93}, {'connected_gene': 'ENSG00000234504', 'score': 0.44}, {'connected_gene': 'TMEM72', 'score': 0.39}, {'connected_gene': 'ENSG00000223462', 'score': 0.39}]
chr10	GH10I044999	44999307	45002772	2.19	[{'connected_gene': 'C10orf25', 'score': 568.22}, {'connected_gene': 'ZNF22', 'score': 559.88}, {'connected_gene': 'PIR48571', 'score': 550.77}, {'connected_gene': 'PIR53385', 'score': 550.77}, {'connected_gene': 'PARGP1', 'score': 28.36}, {'connected_gene': 'WASHC2C', 'score': 18.54}, {'connected_gene': 'ENSG00000273363', 'score': 12.1}, {'connected_gene': 'FAM21FP', 'score': 10.43}, {'connected_gene': 'RASSF4', 'score': 5.48}, {'connected_gene': 'AGAP4', 'score': 4.29}, {'connected_gene': 'MARCH8', 'score': 4.06}, {'connected_gene': 'GC10P045025', 'score': 0.34}, {'connected_gene': 'CEP164P1', 'score': 0.18}]
chr10	GH10I045058	45058273	45059472	0.66	[{'connected_gene': 'C10orf25', 'score': 28.15}, {'connected_gene': 'ZNF22', 'score': 10.7}, {'connected_gene': 'ALOX5', 'score': 2.85}, {'connected_gene': 'GC10P045056', 'score': 0.77}, {'connected_gene': 'GC10M045074', 'score': 0.39}, {'connected_gene': 'CEP164P1', 'score': 0.37}, {'connected_gene': 'ENSG00000277757', 'score': 0.17}]
chr10	GH10I044971	44971395	44988290	2.8	[{'connected_gene': 'DEPP1', 'score': 550.77}, {'connected_gene': 'PIR49011', 'score': 550.77}, {'connected_gene': 'C10orf25', 'score': 25.84}, {'connected_gene': 'ZNF22', 'score': 21.09}, {'connected_gene': 'TMEM72-AS1', 'score': 18.58}, {'connected_gene': 'RASSF4', 'score': 17.48}, {'connected_gene': 'FAM21FP', 'score': 13.13}, {'connected_gene': 'ENSG00000223462', 'score': 12.49}, {'connected_gene': 'ENSG00000234504', 'score': 11.31}, {'connected_gene': 'WASHC2C', 'score': 10.81}, {'connected_gene': 'TMEM72', 'score': 10.31}, {'connected_gene': 'CEP164P1', 'score': 7.18}, {'connected_gene': 'PIR39907', 'score': 0.37}]
chr10	GH10I044969	44969973	44970122	0.4	[{'connected_gene': 'LOC105378281', 'score': 550.77}, {'connected_gene': 'ENSG00000223462', 'score': 12.24}, {'connected_gene': 'C10orf25', 'score': 11.7}, {'connected_gene': 'ZNF22', 'score': 11.7}, {'connected_gene': 'TMEM72', 'score': 10.3}, {'connected_gene': 'TMEM72-AS1', 'score': 0.39}, {'connected_gene': 'RASSF4', 'score': 0.39}]
chr10	GH10I045008	45008401	45009001	1.09	[{'connected_gene': 'CEP164P1', 'score': 23.93}, {'connected_gene': 'ZNF22', 'score': 6.52}, {'connected_gene': 'ENSG00000228702', 'score': 5.48}, {'connected_gene': 'C10orf25', 'score': 0.44}, {'connected_gene': 'GC10P045025', 'score': 0.37}]