Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000472523 [[147111208, 147111729], [147225727, 147225773]] None
ENST00000474034 [[147139113, 147139346], [147225727, 147225839], [147227381, 147228080]] None
ENST00000488404 [[147111681, 147111729], [147130304, 147130468], [147131140, 147131467]] [[147111681, 147111729], [147130304, 147130468], [147131140, 147131338]]
ENST00000282928 [[147127170, 147128881], [147130304, 147130468], [147131140, 147134506]] [[147127899, 147128881], [147130304, 147130468], [147131140, 147131338]]
ENST00000481840 [[147225727, 147225834], [147227381, 147227692]] None
NM_003412 [[147127180, 147128881], [147130304, 147130468], [147131140, 147134506]] [[147127899, 147128881], [147130304, 147130468], [147131140, 147131338]]
Promoter
Chrom Start End Description
chr3 147111198 147111225 CAGE_peak_4_at_ZIC1_5end
chr3 147111231 147111281 CAGE_peak_3_at_ZIC1_5end
chr3 147111285 147111298 CAGE_peak_10_at_ZIC1_5end
chr3 147111317 147111328 CAGE_peak_8_at_ZIC1_5end
chr3 147111418 147111430 CAGE_peak_14_at_ZIC1_5end
chr3 147111505 147111529 CAGE_peak_6_at_ZIC1_5end
chr3 147127142 147127168 CAGE_peak_1_at_ZIC1_5end
chr3 147127177 147127194 CAGE_peak_2_at_ZIC1_5end
chr3 147127329 147127341 CAGE_peak_7_at_ZIC1_5end
chr3 147127358 147127369 CAGE_peak_16_at_ZIC1_5end
chr3 147127489 147127503 CAGE_peak_11_at_ZIC1_5end
chr3 147138953 147138965 CAGE_peak_19_at_ZIC1_5end
chr3 147139053 147139112 CAGE_peak_5_at_ZIC1_5end
chr3 147139152 147139163 CAGE_peak_15_at_ZIC1_5end
chr3 147139238 147139247 CAGE_peak_26_at_ZIC1_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr3 GH03I146975 146975483 146975734 0.65 [{'connected_gene': 'ZIC4', 'score': 17.53}, {'connected_gene': 'ZIC1', 'score': 8.04}, {'connected_gene': 'RNU6-505P', 'score': 0.34}, {'connected_gene': 'GC03M146997', 'score': 0.34}, {'connected_gene': 'LINC02010', 'score': 0.23}, {'connected_gene': 'ENSG00000243620', 'score': 0.05}]
chr3 GH03I147406 147406751 147406810 0.88 [{'connected_gene': 'ZIC4', 'score': 550.77}, {'connected_gene': 'ZIC1', 'score': 0.39}]
chr3 GH03I147404 147404887 147404946 0.81 [{'connected_gene': 'ZIC4', 'score': 550.77}, {'connected_gene': 'ZIC1', 'score': 0.39}]
chr3 GH03I147415 147415225 147415456 0.78 [{'connected_gene': 'ZIC1', 'score': 12.6}, {'connected_gene': 'ENSG00000243620', 'score': 11.86}, {'connected_gene': 'ZIC4', 'score': 0.44}, {'connected_gene': 'LOC440982', 'score': 0.44}]
chr3 GH03I147407 147407359 147412176 1.77 [{'connected_gene': 'ZIC1', 'score': 554.6}, {'connected_gene': 'ZIC4', 'score': 0.77}, {'connected_gene': 'LOC440982', 'score': 0.39}]
chr3 GH03I147419 147419194 147419435 1.08 [{'connected_gene': 'ZIC1', 'score': 38.35}, {'connected_gene': 'ZIC4', 'score': 20.22}, {'connected_gene': 'ZIC4-AS1', 'score': 11.59}, {'connected_gene': 'ENSG00000243620', 'score': 11.2}, {'connected_gene': 'LOC440982', 'score': 0.77}]
chr3 GH03I147391 147391849 147395096 0.95 [{'connected_gene': 'ZIC1', 'score': 550.77}, {'connected_gene': 'ENSG00000243620', 'score': 11.51}, {'connected_gene': 'ZIC4', 'score': 0.39}]
chr3 GH03I147424 147424414 147424628 0.68 [{'connected_gene': 'ZIC1', 'score': 28.13}, {'connected_gene': 'ZIC4-AS1', 'score': 12.03}, {'connected_gene': 'ZIC4', 'score': 11.47}, {'connected_gene': 'ENSG00000243620', 'score': 11.37}, {'connected_gene': 'LOC440982', 'score': 0.77}, {'connected_gene': 'NPM1P28', 'score': 0.1}]
chr3 GH03I147420 147420117 147420323 0.54 [{'connected_gene': 'LOC440982', 'score': 550.77}, {'connected_gene': 'ZIC1', 'score': 19.99}, {'connected_gene': 'ZIC4', 'score': 11.99}, {'connected_gene': 'ZIC4-AS1', 'score': 11.59}, {'connected_gene': 'ENSG00000243620', 'score': 11.2}]
chr3 GH03I147449 147449787 147450017 0.63 [{'connected_gene': 'LOC440982', 'score': 0.31}, {'connected_gene': 'ZIC1', 'score': 0.22}, {'connected_gene': 'NPM1P28', 'score': 0.11}]
chr3 GH03I147613 147613888 147614053 0.22 [{'connected_gene': 'GC03P147615', 'score': 550.77}, {'connected_gene': 'ZIC4', 'score': 8.42}, {'connected_gene': 'ZIC1', 'score': 5.09}, {'connected_gene': 'NPM1P28', 'score': 0.34}]
chr3 GH03I147414 147412674 147412823 0.69 [{'connected_gene': 'ENSG00000243620', 'score': 11.86}, {'connected_gene': 'ZIC4', 'score': 0.44}, {'connected_gene': 'LOC440982', 'score': 0.44}, {'connected_gene': 'ZIC1', 'score': 0.37}]
chr3 GH03I147412 147412954 147413103 0.63 [{'connected_gene': 'ENSG00000243620', 'score': 11.86}, {'connected_gene': 'ZIC4', 'score': 0.44}, {'connected_gene': 'LOC440982', 'score': 0.44}, {'connected_gene': 'ZIC1', 'score': 0.37}]
chr3 GH03I147413 147412514 147412663 0.66 [{'connected_gene': 'ENSG00000243620', 'score': 11.86}, {'connected_gene': 'ZIC4', 'score': 0.44}, {'connected_gene': 'LOC440982', 'score': 0.44}, {'connected_gene': 'ZIC1', 'score': 0.37}]
chr3 GH03I147398 147398194 147398403 0.63 [{'connected_gene': 'ENSG00000243620', 'score': 11.18}, {'connected_gene': 'ZIC1', 'score': 0.77}, {'connected_gene': 'ZIC4', 'score': 0.44}]
chr3 GH03I147399 147397128 147397689 0.69 [{'connected_gene': 'ENSG00000243620', 'score': 11.48}, {'connected_gene': 'ZIC1', 'score': 0.77}, {'connected_gene': 'ZIC4', 'score': 0.39}]
chr3 GH03I147397 147397894 147398083 0.63 [{'connected_gene': 'ENSG00000243620', 'score': 11.18}, {'connected_gene': 'ZIC1', 'score': 0.77}, {'connected_gene': 'ZIC4', 'score': 0.44}]

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