PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000535042	[[61535972, 61536245], [61541450, 61541619], [61546324, 61546555], [61557256, 61557393], [61557964, 61558075]]	None
ENST00000537328	[[61556434, 61556707], [61557256, 61557393], [61557964, 61558074], [61560027, 61560082]]	[[61557266, 61557393], [61557964, 61558074], [61560027, 61560030]]
ENST00000541893	[[61556601, 61556707], [61557256, 61557462], [61557894, 61558074], [61560027, 61560052]]	[[61557927, 61558074], [61560027, 61560030]]
ENST00000545210	[[61556601, 61556707], [61557256, 61557462], [61557846, 61558074], [61560027, 61560066]]	[[61557927, 61558074], [61560027, 61560030]]
ENST00000257262	[[61556601, 61556707], [61557187, 61557393], [61557964, 61558074], [61560027, 61560073]]	[[61557266, 61557393], [61557964, 61558074], [61560027, 61560030]]
ENST00000535297	[[61556601, 61556707], [61557846, 61558074], [61560027, 61560088]]	[[61557927, 61558074], [61560027, 61560030]]
ENST00000543510	[[61556602, 61556707], [61557256, 61557393], [61557964, 61558074], [61558934, 61560274]]	[[61557266, 61557393], [61557964, 61558062]]
ENST00000540434	[[61557568, 61558074], [61560027, 61560074]]	None
NM_014206	[[61556601, 61556707], [61557256, 61557393], [61557964, 61558074], [61560027, 61560085]]	[[61557266, 61557393], [61557964, 61558074], [61560027, 61560030]]

Promoter

Chrom	Start	End	Description
chr11	61560053	61560091	CAGE_peak_1_at_C11orf10_5end
chr11	61560254	61560264	CAGE_peak_4_at_C11orf10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I061787	61787935	61788858	0.87	[{'connected_gene': 'FADS2', 'score': 68.56}, {'connected_gene': 'CPSF7', 'score': 17.89}, {'connected_gene': 'TUT1', 'score': 14.62}, {'connected_gene': 'CSKMT', 'score': 14.5}, {'connected_gene': 'TMEM138', 'score': 13.14}, {'connected_gene': 'RN7SL23P', 'score': 12.94}, {'connected_gene': 'MTA2', 'score': 12.69}, {'connected_gene': 'INTS5', 'score': 12.42}, {'connected_gene': 'GANAB', 'score': 11.96}, {'connected_gene': 'TAF6L', 'score': 11.48}, {'connected_gene': 'EML3', 'score': 10.54}, {'connected_gene': 'TMEM258', 'score': 0.77}, {'connected_gene': 'MIR611', 'score': 0.77}, {'connected_gene': 'GC11P061758', 'score': 0.31}, {'connected_gene': 'MYRF', 'score': 0.28}]
chr11	GH11I061783	61783375	61784980	0.2	[{'connected_gene': 'FADS2', 'score': 28.89}, {'connected_gene': 'TMEM258', 'score': 0.44}, {'connected_gene': 'MIR611', 'score': 0.44}, {'connected_gene': 'GC11P061758', 'score': 0.31}, {'connected_gene': 'MYRF', 'score': 0.29}]
chr11	GH11I061774	61774691	61778027	1.19	[{'connected_gene': 'FADS2', 'score': 23.31}, {'connected_gene': 'TMEM258', 'score': 0.37}, {'connected_gene': 'GC11P061758', 'score': 0.37}, {'connected_gene': 'MIR611', 'score': 0.37}, {'connected_gene': 'MYRF', 'score': 0.34}]
chr11	GH11I061778	61778407	61779395	0.43	[{'connected_gene': 'FADS2', 'score': 25.12}, {'connected_gene': 'TMEM258', 'score': 0.39}, {'connected_gene': 'MIR611', 'score': 0.39}, {'connected_gene': 'GC11P061758', 'score': 0.34}, {'connected_gene': 'MYRF', 'score': 0.31}]
chr11	GH11I061779	61779746	61781277	0.31	[{'connected_gene': 'FADS2', 'score': 28.56}, {'connected_gene': 'TMEM258', 'score': 0.39}, {'connected_gene': 'MIR611', 'score': 0.39}, {'connected_gene': 'GC11P061758', 'score': 0.34}, {'connected_gene': 'MYRF', 'score': 0.31}]
chr11	GH11I061819	61819697	61821435	0.87	[{'connected_gene': 'FADS2', 'score': 27.08}, {'connected_gene': 'TMEM258', 'score': 10.73}, {'connected_gene': 'FEN1', 'score': 10.73}, {'connected_gene': 'MIR611', 'score': 10.73}, {'connected_gene': 'MIR1908', 'score': 0.44}, {'connected_gene': 'PIR43939', 'score': 0.44}, {'connected_gene': 'FADS1', 'score': 0.44}]
chr11	GH11I061762	61762966	61773948	1.33	[{'connected_gene': 'FADS2', 'score': 18.36}, {'connected_gene': 'BEST1', 'score': 10.22}, {'connected_gene': 'MYRF', 'score': 5.07}, {'connected_gene': 'GC11P061758', 'score': 0.44}, {'connected_gene': 'TMEM258', 'score': 0.34}, {'connected_gene': 'MIR611', 'score': 0.34}]
chr11	GH11I061791	61791191	61794259	2.27	[{'connected_gene': 'FADS2', 'score': 583.16}, {'connected_gene': 'MIR611', 'score': 550.77}, {'connected_gene': 'FEN1', 'score': 550.77}, {'connected_gene': 'TMEM258', 'score': 550.77}, {'connected_gene': 'CPSF7', 'score': 45.31}, {'connected_gene': 'CSKMT', 'score': 43.36}, {'connected_gene': 'GANAB', 'score': 40.43}, {'connected_gene': 'TMEM138', 'score': 37.3}, {'connected_gene': 'EML3', 'score': 29.01}, {'connected_gene': 'TUT1', 'score': 28.93}, {'connected_gene': 'INTS5', 'score': 27.86}, {'connected_gene': 'TMEM109', 'score': 27.59}, {'connected_gene': 'RN7SL23P', 'score': 26.63}, {'connected_gene': 'MTA2', 'score': 23.47}, {'connected_gene': 'TAF6L', 'score': 20.06}, {'connected_gene': 'TMEM179B', 'score': 18.46}, {'connected_gene': 'UBXN1', 'score': 18.24}, {'connected_gene': 'SDHAF2', 'score': 12.72}, {'connected_gene': 'MIR1908', 'score': 12.24}, {'connected_gene': 'FADS1', 'score': 12.18}, {'connected_gene': 'EEF1G', 'score': 11.76}, {'connected_gene': 'VPS37C', 'score': 10.96}, {'connected_gene': 'BEST1', 'score': 10.61}, {'connected_gene': 'GC11P061758', 'score': 0.29}]
chr11	GH11I061731	61731896	61734041	1.1	[{'connected_gene': 'DAGLA', 'score': 16.92}, {'connected_gene': 'MYRF', 'score': 13.12}, {'connected_gene': 'DKFZP434K028', 'score': 12.6}, {'connected_gene': 'TMEM258', 'score': 11.65}, {'connected_gene': 'FEN1', 'score': 11.65}, {'connected_gene': 'MIR611', 'score': 11.65}, {'connected_gene': 'SYT7', 'score': 10.46}, {'connected_gene': 'PIR41833', 'score': 0.39}]