PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000557222	[[97319224, 97319276], [97319410, 97319503], [97321560, 97321693], [97322466, 97322587], [97322864, 97322923], [97326893, 97327072], [97397667, 97398059]]	[[97319224, 97319276], [97319410, 97319503], [97321560, 97321693], [97322466, 97322587], [97322864, 97322923], [97326893, 97327072], [97397667, 97397727]]
ENST00000216639	[[97263640, 97263784], [97299803, 97299968], [97304098, 97304154], [97312431, 97312501], [97313593, 97313681], [97319167, 97319276], [97319410, 97319503], [97321560, 97321693], [97322466, 97322587], [97322864, 97322923], [97326893, 97327072], [97342366, 97342457], [97347513, 97347950]]	[[97299808, 97299968], [97304098, 97304154], [97312431, 97312501], [97313593, 97313681], [97319167, 97319276], [97319410, 97319503], [97321560, 97321693], [97322466, 97322587], [97322864, 97322923], [97326893, 97327072], [97342366, 97342457], [97347513, 97347545]]
ENST00000555351	[[97263721, 97263784], [97299803, 97299968], [97304098, 97304154], [97312431, 97312501], [97313593, 97313681], [97319167, 97319392]]	None
ENST00000557352	[[97321640, 97321693], [97322466, 97322587], [97322864, 97322923], [97326893, 97327259]]	[[97321640, 97321693], [97322466, 97322587], [97322864, 97322923], [97326893, 97327189]]
ENST00000555067	[[97325245, 97325364], [97326893, 97327072], [97342366, 97342457], [97347513, 97347728]]	None
ENST00000553683	[[97342365, 97342457], [97343838, 97343910], [97347513, 97347596]]	[[97342365, 97342457], [97343838, 97343910], [97347513, 97347545]]
ENST00000555402	[[97343726, 97343910], [97347513, 97347744]]	None
NM_003384	[[97263683, 97263784], [97299803, 97299968], [97304098, 97304154], [97312431, 97312501], [97313593, 97313681], [97319167, 97319276], [97319410, 97319503], [97321560, 97321693], [97322466, 97322587], [97322864, 97322923], [97326893, 97327072], [97342366, 97342457], [97347513, 97347951]]	[[97299808, 97299968], [97304098, 97304154], [97312431, 97312501], [97313593, 97313681], [97319167, 97319276], [97319410, 97319503], [97321560, 97321693], [97322466, 97322587], [97322864, 97322923], [97326893, 97327072], [97342366, 97342457], [97347513, 97347545]]

Promoter

Chrom	Start	End	Description
chr14	97263676	97263764	CAGE_peak_1_at_VRK1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I096889	96889317	96889618	0.66	[{'connected_gene': 'VRK1', 'score': 11.19}, {'connected_gene': 'GC14P096860', 'score': 0.31}, {'connected_gene': 'LINC00618', 'score': 0.26}]
chr14	GH14I096796	96796724	96798807	2.01	[{'connected_gene': 'VRK1', 'score': 558.36}, {'connected_gene': 'PAPOLA', 'score': 13.8}, {'connected_gene': 'ATG2B', 'score': 10.13}, {'connected_gene': 'GC14P096860', 'score': 0.21}]
chr14	GH14I096782	96782768	96784535	0.58	[{'connected_gene': 'VRK1', 'score': 0.39}, {'connected_gene': 'LINC02299', 'score': 0.26}]
chr14	GH14I097500	97500224	97500373	0.64	[{'connected_gene': 'VRK1', 'score': 4.91}, {'connected_gene': 'GC14M097529', 'score': 0.31}, {'connected_gene': 'LINC02325', 'score': 0.26}]
chr14	GH14I096986	96986319	96986536	0.4	[{'connected_gene': 'VRK1', 'score': 6.07}, {'connected_gene': 'ENSG00000280070', 'score': 0.44}, {'connected_gene': 'GC14M096938', 'score': 0.39}]
chr14	GH14I096824	96824192	96825033	0.38	[{'connected_gene': 'VRK1', 'score': 8.67}, {'connected_gene': 'GC14P096860', 'score': 0.28}]
chr14	GH14I096849	96849416	96850017	0.2	[{'connected_gene': 'VRK1', 'score': 22.16}, {'connected_gene': 'GC14P096860', 'score': 0.39}]
chr14	GH14I096815	96815885	96816026	0.22	[{'connected_gene': 'VRK1', 'score': 0.37}, {'connected_gene': 'GC14P096860', 'score': 0.26}]
chr14	GH14I096799	96799601	96799800	0.46	[{'connected_gene': 'VRK1', 'score': 0.77}, {'connected_gene': 'GC14P096860', 'score': 0.21}]
chr14	GH14I096806	96806863	96807216	1.02	[{'connected_gene': 'VRK1', 'score': 0.44}, {'connected_gene': 'GC14P096860', 'score': 0.23}]
chr14	GH14I096821	96821185	96822091	0.31	[{'connected_gene': 'VRK1', 'score': 18.86}, {'connected_gene': 'GC14P096860', 'score': 0.28}]
chr14	GH14I096888	96888589	96888866	1.09	[{'connected_gene': 'PAPOLA', 'score': 16.26}, {'connected_gene': 'ATG2B', 'score': 9.83}, {'connected_gene': 'GC14P096860', 'score': 0.31}, {'connected_gene': 'LINC00618', 'score': 0.26}, {'connected_gene': 'VRK1', 'score': 0.16}]
chr14	GH14I096741	96741400	96741801	1.08	[{'connected_gene': 'LINC02299', 'score': 550.77}, {'connected_gene': 'VRK1', 'score': 0.22}]
chr14	GH14I096762	96762601	96763079	0.99	[{'connected_gene': 'LINC02299', 'score': 0.34}, {'connected_gene': 'VRK1', 'score': 0.29}]
chr14	GH14I096755	96755161	96755490	0.57	[{'connected_gene': 'LINC02299', 'score': 0.39}, {'connected_gene': 'VRK1', 'score': 0.26}]
chr14	GH14I096756	96755564	96755713	0.2	[{'connected_gene': 'LINC02299', 'score': 0.39}, {'connected_gene': 'VRK1', 'score': 0.26}]
chr14	GH14I096754	96754924	96755073	0.59	[{'connected_gene': 'LINC02299', 'score': 0.39}, {'connected_gene': 'VRK1', 'score': 0.26}]
chr14	GH14I096863	96863364	96863987	0.38	[{'connected_gene': 'GC14P096860', 'score': 0.77}, {'connected_gene': 'VRK1', 'score': 0.2}, {'connected_gene': 'LINC00618', 'score': 0.2}]
chr14	GH14I096961	96961954	96964719	0.72	[{'connected_gene': 'GC14P096964', 'score': 550.77}, {'connected_gene': 'GC14P096965', 'score': 550.77}, {'connected_gene': 'VRK1', 'score': 8.15}, {'connected_gene': 'GC14M096938', 'score': 0.44}, {'connected_gene': 'LINC00618', 'score': 0.29}]
chr14	GH14I096861	96861831	96862736	0.38	[{'connected_gene': 'GC14P096860', 'score': 550.77}, {'connected_gene': 'VRK1', 'score': 0.21}, {'connected_gene': 'LINC00618', 'score': 0.2}]
chr14	GH14I096964	96964826	96965429	0.4	[{'connected_gene': 'GC14P096964', 'score': 550.77}, {'connected_gene': 'GC14P096965', 'score': 550.77}, {'connected_gene': 'VRK1', 'score': 5.66}, {'connected_gene': 'GC14M096938', 'score': 0.44}]
chr14	GH14I096874	96874203	96874499	0.4	[{'connected_gene': 'GC14P096860', 'score': 0.39}, {'connected_gene': 'LINC00618', 'score': 0.22}, {'connected_gene': 'VRK1', 'score': 0.18}]