PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000433647	[[42530790, 42531170], [42554242, 42554441], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42579059]]	[[42555285, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]
ENST00000473495	[[42530971, 42531170], [42541535, 42541908]]	None
ENST00000490161	[[42530974, 42531170], [42533819, 42534022], [42541535, 42541638]]	None
ENST00000487545	[[42530985, 42531170], [42555240, 42555346], [42560714, 42560806]]	None
ENST00000450274	[[42543403, 42543721], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988]]	[[42555285, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988]]
ENST00000436487	[[42544103, 42544305], [42560714, 42560822], [42567378, 42567485], [42568887, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573802]]	[[42544227, 42544305], [42560714, 42560774]]
ENST00000543411	[[42544103, 42544305], [42560714, 42560822], [42567378, 42567485], [42568887, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577886]]	[[42544262, 42544305], [42560714, 42560822], [42567378, 42567485], [42568887, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]
ENST00000443646	[[42544103, 42544305], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577886]]	[[42544227, 42544305], [42560714, 42560774]]
ENST00000438259	[[42544108, 42544305], [42560714, 42560822], [42567378, 42567485], [42572270, 42572404], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42578036]]	[[42567459, 42567485], [42572270, 42572404], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]
ENST00000439910	[[42544108, 42544305], [42560714, 42560822], [42567378, 42567485], [42572270, 42572404], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42578036]]	[[42544227, 42544305], [42560714, 42560774]]
ENST00000439731	[[42544114, 42544305], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42572270, 42572424]]	[[42544227, 42544305], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42572270, 42572424]]
ENST00000325123	[[42544114, 42544305], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42579059]]	[[42544227, 42544305], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]
ENST00000446673	[[42544155, 42544305], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825]]	[[42544227, 42544305], [42560714, 42560774]]
ENST00000473575	[[42555290, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42569391]]	None
ENST00000495189	[[42569144, 42569615], [42572270, 42572389]]	None
ENST00000465338	[[42571225, 42571743], [42572270, 42572424], [42572962, 42573018]]	None
ENST00000498102	[[42574357, 42576596], [42576834, 42576876], [42577581, 42579059]]	None
NM_001251882	[[42530790, 42531170], [42554242, 42554441], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42579065]]	[[42555285, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]
NM_001251885	[[42544103, 42544276], [42555257, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42579065]]	[[42544262, 42544276], [42555257, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]
NM_001251883	[[42544103, 42544305], [42560714, 42560822], [42567378, 42567485], [42572270, 42572404], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42579065]]	[[42567459, 42567485], [42572270, 42572404], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]
NM_001251884	[[42544103, 42544305], [42560714, 42560822], [42567378, 42567485], [42568887, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42579065]]	[[42544262, 42544305], [42560714, 42560822], [42567378, 42567485], [42568887, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]
NM_004624	[[42544103, 42544305], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42579065]]	[[42544227, 42544305], [42555240, 42555346], [42560714, 42560822], [42567378, 42567485], [42568884, 42568988], [42569482, 42569615], [42572270, 42572424], [42572962, 42573023], [42573294, 42573361], [42573733, 42573825], [42576466, 42576596], [42576834, 42576876], [42577581, 42577773]]

Promoter

Chrom	Start	End	Description
chr3	42544084	42544141	CAGE_peak_1_at_VIPR1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I042522	42522350	42523732	0.38	[{'connected_gene': 'SEC22C', 'score': 14.52}, {'connected_gene': 'VIPR1', 'score': 11.5}, {'connected_gene': 'NKTR', 'score': 10.51}, {'connected_gene': 'VIPR1-AS1', 'score': 0.39}]
chr3	GH03I042544	42544523	42545794	1.06	[{'connected_gene': 'SEC22C', 'score': 50.94}, {'connected_gene': 'NKTR', 'score': 20.98}, {'connected_gene': 'SS18L2', 'score': 12.09}, {'connected_gene': 'VIPR1', 'score': 11.04}, {'connected_gene': 'CCDC13', 'score': 9.63}, {'connected_gene': 'CCDC13-AS1', 'score': 9.37}, {'connected_gene': 'VIPR1-AS1', 'score': 0.39}]
chr3	GH03I042229	42229801	42230001	0.54	[{'connected_gene': 'CCK', 'score': 10.56}, {'connected_gene': 'VIPR1', 'score': 10.38}, {'connected_gene': 'VIPR1-AS1', 'score': 10.36}, {'connected_gene': 'RNU4-78P', 'score': 0.44}, {'connected_gene': 'LOC105377048', 'score': 0.37}]
chr3	GH03I042488	42488806	42491219	1.21	[{'connected_gene': 'VIPR1', 'score': 555.7}, {'connected_gene': 'SEC22C', 'score': 6.51}, {'connected_gene': 'VIPR1-AS1', 'score': 0.26}]
chr3	GH03I042526	42526801	42527400	0.72	[{'connected_gene': 'VIPR1', 'score': 14.99}, {'connected_gene': 'SS18L2', 'score': 10.62}, {'connected_gene': 'LYZL4', 'score': 10.62}, {'connected_gene': 'SEC22C', 'score': 10.58}, {'connected_gene': 'NKTR', 'score': 8.31}, {'connected_gene': 'VIPR1-AS1', 'score': 0.44}]
chr3	GH03I042501	42501769	42512249	2.54	[{'connected_gene': 'VIPR1', 'score': 550.37}, {'connected_gene': 'NKTR', 'score': 27.45}, {'connected_gene': 'SEC22C', 'score': 15.64}, {'connected_gene': 'VIPR1-AS1', 'score': 12.32}, {'connected_gene': 'SNRK-AS1', 'score': 11.12}, {'connected_gene': 'SS18L2', 'score': 10.78}, {'connected_gene': 'ZNF662', 'score': 10.05}, {'connected_gene': 'CCDC13-AS1', 'score': 4.34}]
chr3	GH03I042518	42518730	42521575	0.52	[{'connected_gene': 'VIPR1', 'score': 15.68}, {'connected_gene': 'NKTR', 'score': 9.23}, {'connected_gene': 'SEC22C', 'score': 5.06}, {'connected_gene': 'VIPR1-AS1', 'score': 0.39}]
chr3	GH03I042514	42514776	42516900	0.83	[{'connected_gene': 'VIPR1', 'score': 12.48}, {'connected_gene': 'NKTR', 'score': 10.48}, {'connected_gene': 'VIPR1-AS1', 'score': 0.37}]
chr3	GH03I042524	42524849	42524990	0.45	[{'connected_gene': 'VIPR1', 'score': 16.25}, {'connected_gene': 'LYZL4', 'score': 10.62}, {'connected_gene': 'SS18L2', 'score': 10.61}, {'connected_gene': 'SEC22C', 'score': 10.57}, {'connected_gene': 'NKTR', 'score': 7.94}, {'connected_gene': 'CCDC13', 'score': 3.36}, {'connected_gene': 'VIPR1-AS1', 'score': 0.44}]
chr3	GH03I042255	42255849	42257604	0.63	[{'connected_gene': 'VIPR1', 'score': 9.9}, {'connected_gene': 'LOC105377048', 'score': 0.44}, {'connected_gene': 'ENSG00000281160', 'score': 0.44}]
chr3	GH03I042177	42177608	42182277	1.57	[{'connected_gene': 'VIPR1', 'score': 10.29}, {'connected_gene': 'VIPR1-AS1', 'score': 10.29}, {'connected_gene': 'TRAK1', 'score': 6.1}, {'connected_gene': 'TPMTP2', 'score': 0.29}, {'connected_gene': 'GC03P042217', 'score': 0.28}]
chr3	GH03I042183	42183201	42185842	0.43	[{'connected_gene': 'VIPR1', 'score': 10.29}, {'connected_gene': 'VIPR1-AS1', 'score': 10.29}, {'connected_gene': 'TRAK1', 'score': 6.33}, {'connected_gene': 'GC03P042217', 'score': 0.29}, {'connected_gene': 'TPMTP2', 'score': 0.28}]
chr3	GH03I042176	42176377	42176815	0.63	[{'connected_gene': 'VIPR1', 'score': 10.29}, {'connected_gene': 'VIPR1-AS1', 'score': 10.29}, {'connected_gene': 'TPMTP2', 'score': 0.29}, {'connected_gene': 'GC03P042217', 'score': 0.26}, {'connected_gene': 'TRAK1', 'score': 0.1}]
chr3	GH03I042476	42476294	42477377	0.79	[{'connected_gene': 'VIPR1', 'score': 4.94}, {'connected_gene': 'RPL35AP8', 'score': 0.44}]
chr3	GH03I042472	42472622	42474622	0.96	[{'connected_gene': 'VIPR1', 'score': 4.87}, {'connected_gene': 'RPL35AP8', 'score': 0.77}]
chr3	GH03I042541	42541657	42542937	0.31	[{'connected_gene': 'SS18L2', 'score': 12.09}, {'connected_gene': 'SEC22C', 'score': 12.03}, {'connected_gene': 'VIPR1', 'score': 11.05}, {'connected_gene': 'CCDC13', 'score': 9.63}, {'connected_gene': 'CCDC13-AS1', 'score': 9.36}, {'connected_gene': 'NKTR', 'score': 7.25}, {'connected_gene': 'VIPR1-AS1', 'score': 0.44}]
chr3	GH03I042539	42539949	42540118	0.79	[{'connected_gene': 'SS18L2', 'score': 12.07}, {'connected_gene': 'SEC22C', 'score': 12.02}, {'connected_gene': 'VIPR1', 'score': 11.05}, {'connected_gene': 'CCDC13', 'score': 9.63}, {'connected_gene': 'CCDC13-AS1', 'score': 9.36}, {'connected_gene': 'VIPR1-AS1', 'score': 0.44}]
chr3	GH03I042547	42547529	42547678	0.87	[{'connected_gene': 'SS18L2', 'score': 12.1}, {'connected_gene': 'SEC22C', 'score': 12.04}, {'connected_gene': 'VIPR1', 'score': 11.04}, {'connected_gene': 'CCDC13', 'score': 9.63}, {'connected_gene': 'CCDC13-AS1', 'score': 9.37}, {'connected_gene': 'VIPR1-AS1', 'score': 0.39}]
chr3	GH03I042555	42555672	42557078	0.58	[{'connected_gene': 'NKTR', 'score': 36.86}, {'connected_gene': 'VIPR1', 'score': 11.14}, {'connected_gene': 'CCDC13-AS1', 'score': 10.41}, {'connected_gene': 'CCDC13', 'score': 10.4}, {'connected_gene': 'VIPR1-AS1', 'score': 0.34}, {'connected_gene': 'SS18L2', 'score': 0.31}, {'connected_gene': 'SEC22C', 'score': 0.26}]
chr3	GH03I042019	42019002	42027622	1.69	[{'connected_gene': 'NKTR', 'score': 38.34}, {'connected_gene': 'ULK4', 'score': 30.37}, {'connected_gene': 'ZNF662', 'score': 21.2}, {'connected_gene': 'CTNNB1', 'score': 14.12}, {'connected_gene': 'TRAK1', 'score': 11.28}, {'connected_gene': 'VIPR1', 'score': 4.69}, {'connected_gene': 'ENSG00000229339', 'score': 0.31}]
chr3	GH03I042041	42041554	42046851	1.33	[{'connected_gene': 'TRAK1', 'score': 21.55}, {'connected_gene': 'ULK4', 'score': 15.88}, {'connected_gene': 'VIPR1', 'score': 4.8}, {'connected_gene': 'ENSG00000229339', 'score': 0.44}]
chr3	GH03I042247	42247609	42247758	0.64	[{'connected_gene': 'LOC105377048', 'score': 550.77}, {'connected_gene': 'VIPR1', 'score': 10.81}, {'connected_gene': 'VIPR1-AS1', 'score': 10.8}, {'connected_gene': 'ENSG00000212145', 'score': 9.75}, {'connected_gene': 'RNU4-78P', 'score': 0.31}]
chr3	GH03I042532	42532631	42534403	0.46	[{'connected_gene': 'VIPR1-AS1', 'score': 550.77}, {'connected_gene': 'SEC22C', 'score': 7.42}, {'connected_gene': 'VIPR1', 'score': 0.26}, {'connected_gene': 'SS18L2', 'score': 0.25}]
chr3	GH03I042536	42536509	42536658	0.59	[{'connected_gene': 'VIPR1-AS1', 'score': 0.77}, {'connected_gene': 'VIPR1', 'score': 0.25}, {'connected_gene': 'SS18L2', 'score': 0.25}]
chr3	GH03I042529	42529401	42530000	0.58	[{'connected_gene': 'VIPR1-AS1', 'score': 0.77}, {'connected_gene': 'VIPR1', 'score': 0.26}]
chr3	GH03I042492	42492201	42493000	0.79	[{'connected_gene': 'VIPR1-AS1', 'score': 11.61}, {'connected_gene': 'VIPR1', 'score': 0.77}]
chr3	GH03I042530	42530585	42532582	0.38	[{'connected_gene': 'VIPR1-AS1', 'score': 550.77}, {'connected_gene': 'VIPR1', 'score': 0.26}]
chr3	GH03I042496	42496629	42497733	1.18	[{'connected_gene': 'SNRK-AS1', 'score': 4.02}, {'connected_gene': 'VIPR1', 'score': 0.44}, {'connected_gene': 'VIPR1-AS1', 'score': 0.28}]
chr3	GH03I042475	42475101	42475179	0.2	[{'connected_gene': 'RPL35AP8', 'score': 0.44}, {'connected_gene': 'VIPR1', 'score': 0.39}]
chr3	GH03I042187	42187909	42189549	0.58	[{'connected_gene': 'ENSG00000212145', 'score': 10.47}, {'connected_gene': 'VIPR1', 'score': 9.67}, {'connected_gene': 'TRAK1', 'score': 5.51}, {'connected_gene': 'GC03P042217', 'score': 0.31}, {'connected_gene': 'TPMTP2', 'score': 0.26}]