PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367879	[[165796767, 165797169], [165859440, 165859600], [165860462, 165860559], [165865426, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877346]]	[[165797070, 165797169], [165859440, 165859600], [165860462, 165860559], [165865426, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877060]]
ENST00000372212	[[165797058, 165797169], [165859440, 165859600], [165860462, 165860559], [165872418, 165872516], [165875157, 165875206], [165876920, 165877607]]	[[165797070, 165797169], [165859440, 165859600], [165860462, 165860559], [165872418, 165872455]]
ENST00000462329	[[165861888, 165862011], [165865426, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877337]]	None
ENST00000464197	[[165863402, 165863816], [165865426, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877027]]	None
ENST00000469256	[[165864806, 165864878], [165865426, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877311]]	[[165865520, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877060]]
ENST00000470820	[[165864821, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877108]]	[[165865520, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877060]]
ENST00000463772	[[165867215, 165867241], [165872418, 165872516], [165875157, 165875206], [165876920, 165877346]]	None
ENST00000479872	[[165871831, 165872516], [165875157, 165875206], [165876920, 165880855]]	None
ENST00000475333	[[165873302, 165873404], [165875157, 165875206], [165876920, 165877185]]	None
NM_012474	[[165796731, 165797169], [165859440, 165859600], [165860462, 165860559], [165865426, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165880855]]	[[165797070, 165797169], [165859440, 165859600], [165860462, 165860559], [165865426, 165865569], [165872418, 165872516], [165875157, 165875206], [165876920, 165877060]]

Promoter

Chrom	Start	End	Description
chr1	165796753	165796776	CAGE_peak_5_at_UCK2_5end
chr1	165796782	165796803	CAGE_peak_2_at_UCK2_5end
chr1	165796811	165796860	CAGE_peak_1_at_UCK2_5end
chr1	165796870	165796886	CAGE_peak_4_at_UCK2_5end
chr1	165797024	165797069	CAGE_peak_3_at_UCK2_5end
chr1	165864783	165864796	CAGE_peak_8_at_UCK2_5end
chr1	165864800	165864818	CAGE_peak_9_at_UCK2_5end
chr1	165864821	165864850	CAGE_peak_11_at_UCK2_5end
chr1	165871855	165871859	CAGE_peak_7_at_UCK2_5end
chr1	165873233	165873247	CAGE_peak_6_at_UCK2_5end
chr1	165877680	165877684	CAGE_peak_10_at_UCK2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I165826	165826913	165830228	2.56	[{'connected_gene': 'UCK2', 'score': 555.55}, {'connected_gene': 'TMCO1', 'score': 550.77}, {'connected_gene': 'LOC284685', 'score': 37.31}, {'connected_gene': 'ENSG00000236364', 'score': 11.27}]
chr1	GH01I165902	165902843	165904807	0.58	[{'connected_gene': 'UCK2', 'score': 17.51}, {'connected_gene': 'ENSG00000236364', 'score': 12.62}, {'connected_gene': 'TMCO1', 'score': 10.79}, {'connected_gene': 'LOC100147773', 'score': 10.72}, {'connected_gene': 'LOC105371586', 'score': 8.16}, {'connected_gene': 'MIR3658', 'score': 0.77}]
chr1	GH01I165894	165894234	165901752	1.47	[{'connected_gene': 'UCK2', 'score': 18.91}, {'connected_gene': 'ENSG00000236364', 'score': 12.92}, {'connected_gene': 'TMCO1', 'score': 10.8}, {'connected_gene': 'LOC100147773', 'score': 10.73}, {'connected_gene': 'LOC105371586', 'score': 8.23}]
chr1	GH01I165874	165874741	165876896	0.86	[{'connected_gene': 'UCK2', 'score': 11.92}, {'connected_gene': 'TMCO1', 'score': 10.81}, {'connected_gene': 'LOC100147773', 'score': 10.71}, {'connected_gene': 'LOC105371586', 'score': 5.35}, {'connected_gene': 'ENSG00000236364', 'score': 0.34}]
chr1	GH01I165884	165883520	165885837	1.12	[{'connected_gene': 'UCK2', 'score': 13.38}, {'connected_gene': 'TMCO1', 'score': 11.5}, {'connected_gene': 'LOC100147773', 'score': 11.4}, {'connected_gene': 'LOC105371586', 'score': 5.39}, {'connected_gene': 'ENSG00000236364', 'score': 0.37}]
chr1	GH01I165869	165868809	165869333	0.2	[{'connected_gene': 'UCK2', 'score': 12.46}, {'connected_gene': 'TMCO1', 'score': 12.1}, {'connected_gene': 'LOC100147773', 'score': 11.98}, {'connected_gene': 'ENSG00000236364', 'score': 11.3}]
chr1	GH01I165870	165870551	165872173	1.35	[{'connected_gene': 'UCK2', 'score': 22.58}, {'connected_gene': 'TMCO1', 'score': 11.46}, {'connected_gene': 'LOC100147773', 'score': 11.35}, {'connected_gene': 'ENSG00000236364', 'score': 11.31}]
chr1	GH01I165863	165862044	165862193	0.69	[{'connected_gene': 'UCK2', 'score': 0.29}, {'connected_gene': 'TMCO1', 'score': 0.29}, {'connected_gene': 'ENSG00000236364', 'score': 0.28}]
chr1	GH01I165850	165850959	165851632	1.1	[{'connected_gene': 'UCK2', 'score': 0.34}, {'connected_gene': 'TMCO1', 'score': 0.34}, {'connected_gene': 'ENSG00000236364', 'score': 0.25}]
chr1	GH01I165862	165862401	165862800	0.58	[{'connected_gene': 'UCK2', 'score': 11.12}, {'connected_gene': 'TMCO1', 'score': 0.29}, {'connected_gene': 'ENSG00000236364', 'score': 0.28}]
chr1	GH01I165830	165830603	165831795	0.57	[{'connected_gene': 'UCK2', 'score': 0.77}, {'connected_gene': 'TMCO1', 'score': 0.77}, {'connected_gene': 'ENSG00000236364', 'score': 0.2}]
chr1	GH01I165840	165840401	165840600	0.63	[{'connected_gene': 'UCK2', 'score': 0.39}, {'connected_gene': 'TMCO1', 'score': 0.39}, {'connected_gene': 'ENSG00000236364', 'score': 0.21}]
chr1	GH01I165833	165833001	165833400	0.85	[{'connected_gene': 'UCK2', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.44}, {'connected_gene': 'ENSG00000236364', 'score': 0.2}]
chr1	GH01I165849	165849601	165850000	0.58	[{'connected_gene': 'UCK2', 'score': 0.34}, {'connected_gene': 'TMCO1', 'score': 0.34}, {'connected_gene': 'ENSG00000236364', 'score': 0.23}]
chr1	GH01I165846	165846484	165846633	0.93	[{'connected_gene': 'UCK2', 'score': 0.37}, {'connected_gene': 'TMCO1', 'score': 0.37}, {'connected_gene': 'ENSG00000236364', 'score': 0.23}]
chr1	GH01I165847	165847765	165848374	0.49	[{'connected_gene': 'UCK2', 'score': 0.34}, {'connected_gene': 'TMCO1', 'score': 0.34}, {'connected_gene': 'ENSG00000236364', 'score': 0.23}]
chr1	GH01I165888	165888988	165889761	0.2	[{'connected_gene': 'UCK2', 'score': 12.82}, {'connected_gene': 'LOC105371586', 'score': 5.61}, {'connected_gene': 'ENSG00000236364', 'score': 0.39}, {'connected_gene': 'TMCO1', 'score': 0.21}]
chr1	GH01I165890	165890438	165893252	0.63	[{'connected_gene': 'UCK2', 'score': 14.04}, {'connected_gene': 'LOC105371586', 'score': 7.03}, {'connected_gene': 'ENSG00000236364', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.21}]
chr1	GH01I165879	165879513	165882728	0.52	[{'connected_gene': 'UCK2', 'score': 12.18}, {'connected_gene': 'LOC105371586', 'score': 6.1}, {'connected_gene': 'ENSG00000236364', 'score': 0.37}, {'connected_gene': 'TMCO1', 'score': 0.23}]
chr1	GH01I165914	165914001	165914600	1.2	[{'connected_gene': 'UCK2', 'score': 16.91}, {'connected_gene': 'ENSG00000236364', 'score': 10.77}, {'connected_gene': 'PIR60084', 'score': 0.77}, {'connected_gene': 'LOC100420658', 'score': 0.31}]
chr1	GH01I165864	165864870	165867482	0.49	[{'connected_gene': 'TMCO1', 'score': 11.06}, {'connected_gene': 'UCK2', 'score': 11.0}, {'connected_gene': 'LOC100147773', 'score': 10.94}, {'connected_gene': 'LOC105371586', 'score': 5.65}, {'connected_gene': 'ENSG00000236364', 'score': 0.29}]
chr1	GH01I165841	165841377	165843773	1.35	[{'connected_gene': 'TMCO1', 'score': 0.39}, {'connected_gene': 'UCK2', 'score': 0.37}, {'connected_gene': 'ENSG00000236364', 'score': 0.22}]
chr1	GH01I165852	165852757	165860412	1.68	[{'connected_gene': 'LOC284685', 'score': 44.02}, {'connected_gene': 'UCK2', 'score': 24.96}, {'connected_gene': 'ENSG00000236364', 'score': 17.4}, {'connected_gene': 'RPS13P1', 'score': 12.12}, {'connected_gene': 'TMCO1', 'score': 11.31}, {'connected_gene': 'LOC100147773', 'score': 11.16}, {'connected_gene': 'LOC105371586', 'score': 4.66}]
chr1	GH01I165695	165695564	165699265	2.05	[{'connected_gene': 'ALDH9A1', 'score': 582.54}, {'connected_gene': 'LOC440700', 'score': 550.77}, {'connected_gene': 'LOC284685', 'score': 23.64}, {'connected_gene': 'MGST3', 'score': 11.86}, {'connected_gene': 'UCK2', 'score': 9.99}, {'connected_gene': 'GC01M165672', 'score': 0.37}]
chr1	GH01I166489	166488692	166491205	1.48	[{'connected_gene': 'LINC01675', 'score': 550.77}, {'connected_gene': 'LOC284685', 'score': 15.52}, {'connected_gene': 'UCK2', 'score': 9.9}, {'connected_gene': 'ALDH9A1', 'score': 5.36}, {'connected_gene': 'FMO7P', 'score': 0.37}]
chr1	GH01I165877	165877564	165878826	0.98	[{'connected_gene': 'ENSG00000236364', 'score': 12.15}, {'connected_gene': 'UCK2', 'score': 12.06}, {'connected_gene': 'TMCO1', 'score': 10.92}, {'connected_gene': 'LOC100147773', 'score': 10.83}, {'connected_gene': 'LOC105371586', 'score': 5.5}]
chr1	GH01I165883	165883184	165883401	0.78	[{'connected_gene': 'ENSG00000236364', 'score': 0.37}, {'connected_gene': 'UCK2', 'score': 0.22}, {'connected_gene': 'TMCO1', 'score': 0.22}]
chr1	GH01I165837	165837029	165837757	0.85	[{'connected_gene': 'ENSG00000236364', 'score': 11.08}, {'connected_gene': 'UCK2', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.44}]
chr1	GH01I165889	165888144	165888766	0.54	[{'connected_gene': 'ENSG00000236364', 'score': 0.39}, {'connected_gene': 'UCK2', 'score': 0.21}, {'connected_gene': 'TMCO1', 'score': 0.21}]
chr1	GH01I165868	165868298	165868806	0.2	[{'connected_gene': 'ENSG00000236364', 'score': 0.29}, {'connected_gene': 'UCK2', 'score': 0.26}, {'connected_gene': 'TMCO1', 'score': 0.26}]
chr1	GH01I165836	165836601	165836800	1.02	[{'connected_gene': 'ENSG00000236364', 'score': 11.08}, {'connected_gene': 'UCK2', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.44}]
chr1	GH01I165886	165886201	165886685	0.78	[{'connected_gene': 'ENSG00000236364', 'score': 0.39}, {'connected_gene': 'UCK2', 'score': 0.22}, {'connected_gene': 'TMCO1', 'score': 0.22}]
chr1	GH01I165834	165834211	165835498	0.46	[{'connected_gene': 'ENSG00000236364', 'score': 10.71}, {'connected_gene': 'UCK2', 'score': 0.44}, {'connected_gene': 'TMCO1', 'score': 0.44}]
chr1	GH01I165915	165915053	165916194	0.66	[{'connected_gene': 'ENSG00000236364', 'score': 10.79}, {'connected_gene': 'LOC105371586', 'score': 8.78}, {'connected_gene': 'UCK2', 'score': 6.32}, {'connected_gene': 'PIR60084', 'score': 0.44}, {'connected_gene': 'LOC100420658', 'score': 0.31}]
chr1	GH01I165910	165910198	165912393	1.28	[{'connected_gene': 'PIR60084', 'score': 550.77}, {'connected_gene': 'LOC105371586', 'score': 7.82}, {'connected_gene': 'LOC100420658', 'score': 0.29}, {'connected_gene': 'UCK2', 'score': 0.18}]