PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
SELENOS	0	VCP	6	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ye Y (2004), Ye Y (2004), Wang Q (2008), Ballar P (2007), Ballar P (2007), Schulze A (2005), Zhong Y (2011), Zhong Y (2011), Christianson JC (2012), Liu Y (2014), Noda C (2014), Lee JH (2014), Mountassif D (2015)	13
NSFL1C	1	PSMD2	2	affinity chromatography technology	Alexandru G (2008)	1
SPRTN	0	NPLOC4	4	affinity chromatography technology, affinity chromatography technology	Davis EJ (2012), Davis EJ (2012)	2
USP13	2	UBL4A	0	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study	Sowa ME (2009), Liu Y (2014), Liu Y (2014), Liu Y (2014)	4
MOV10	6	CAV1	0	affinity chromatography technology	Castello A (2012)	1
ATG9A	5	NPLOC4	4	affinity chromatography technology	Huttlin EL (2017)	1
VCP	6	FAF1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, x-ray crystallography, x-ray crystallography, pull down, x-ray crystallography, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Haenzelmann P (2011), Song EJ (2005), Song EJ (2005), Shin HY (2010), Haenzelmann P (2011), Haenzelmann P (2011), Kang W (2011), Alexandru G (2012), Lee JJ (2013), Lee JJ (2013), Lee JJ (2013), Yu CC (2013), Baron Y (2014), Franz A (2016), Raman M (2015)	17
PTPRF	9	CAV1	0	affinity chromatography technology	Caselli A (2002)	1
UBL4A	0	FAF2	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Xu Y (2012), Xu Y (2013)	3
USP13	2	UBC	7	enzymatic study, pull down, pull down, pull down, pull down	Zhang YH (2012), Nathan JA (2013), Zhang YH (2012), Zhang X (2017), Kwasna D (2018)	5
FAF1	1	NPLOC4	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Haenzelmann P (2011), Lee JJ (2013), Lee JJ (2013), Raman M (2015), Raman M (2015)	7
UFD1	1	ARMC1	2	biochemical	Wan C (2015)	1
ASNS	0	GARS	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
STIP1	1	SUMO3	0	biochemical	Wan C (2015)	1
SEM1	0	PSMD2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Wei SJ (2008), Krogan NJ (2004), Krogan NJ (2004)	4
UFD1	1	F13A1	3	two hybrid	Vinayagam A (2011)	1
UBXN7	3	NPLOC4	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Raman M (2015)	3
VCPIP1	4	SVIP	1	affinity chromatography technology	Sowa ME (2009)	1
RAE1	0	UFD1	1	affinity chromatography technology	Sowa ME (2009)	1
YOD1	0	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, two hybrid, pull down	Ernst R (2009), Locke M (2014), Locke M (2014), Ernst R (2009), Ernst R (2009), Schimmack G (2017), Schimmack G (2017)	7
MOV10	6	NPLOC4	4	affinity chromatography technology	Castello A (2012)	1
FAF2	4	UBXN7	3	affinity chromatography technology, affinity chromatography technology	Raman M (2015), Raman M (2015)	2
UBE2N	1	VPS33B	2	biochemical	Havugimana PC (2012)	1
AMFR	2	UBC	7	pull down, pull down, imaging technique, affinity chromatography technology, enzymatic study, x-ray crystallography, pull down, x-ray crystallography, pull down, enzymatic study, enzymatic study, pull down, affinity chromatography technology	Zhong X (2004), Yang H (2010), Ying Z (2009), Jo Y (2011), Ye Y (2003), Xu Y (2012), Liu S (2012), Liu S (2012), Xu Y (2012), Morito D (2008), Flierman D (2006), Liu W (2014), Fang S (2001)	13
VCP	6	UFD1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Wang Q (2008), Ballar P (2007), Alexandru G (2008), Zhong X (2006), Fernandez-Saiz V (2010), Nagahama M (2009), Noguchi M (2005), Bruderer RM (2004), Bruderer RM (2004), Bruderer RM (2004), Erzurumlu Y (2013), Li JM (2013), Fogeron ML (2013), Haenzelmann P (2016), Haenzelmann P (2016), Haenzelmann P (2016), Raman M (2015), Raman M (2015), Mountassif D (2015), Wang T (2016), Guo X (2017)	21
FAF2	4	ATG9A	5	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
SLC17A2	0	AMFR	2	affinity chromatography technology	Huttlin EL (2017)	1
FAF2	4	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology	Lee JN (2008), Alexandru G (2008), Alexandru G (2008), Mueller B (2008), Alexandru G (2012), Xu Y (2013), Christianson JC (2012), Besten Wd (2012), Madsen L (2014), Raman M (2015)	10
UBXN1	0	HUWE1	22	affinity chromatography technology	Alexandru G (2008)	1
CAV1	0	UFD1	1	affinity chromatography technology	Chen SF (2013)	1
UBXN10	2	RAE1	0	affinity chromatography technology	Raman M (2015)	1
VCP	6	STIP1	1	biochemical	Wan C (2015)	1
AMFR	2	ERLIN2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jo Y (2011), Jo Y (2011), Jo Y (2011), Pearce MM (2007), Huber MD (2013), Christianson JC (2012)	6
VCP	6	BTRC	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Li JM (2013), Riemer A (2014), Zhang Z (2015)	3
TRIM14	1	HSPB1	2	bioid	Tan P (2017)	1
BTRC	1	NPLOC4	4	affinity chromatography technology	Riemer A (2014)	1
UBC	7	RAE1	0	affinity chromatography technology	Matsumoto M (2005)	1
UBC	7	VCP	6	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Zhong X (2006), Dai RM (2001), Bish RA (2007), Lim JJ (2016), Zhang X (2017)	6
ATG9A	5	UBXN7	3	affinity chromatography technology	Huttlin EL (2017)	1
UFD1	1	SH3KBP1	1	biochemical	Wan C (2015)	1
VCP	6	ASPSCR1	3	affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Vinayagam A (2011), Alexandru G (2012), Yu CC (2013), Fogeron ML (2013), Rolland T (2014), Madsen L (2014), Madsen L (2014), Madsen L (2014), Madsen L (2014), Hein MY (2015), Raman M (2015), Huttlin EL (2017)	14
RAE1	0	FAF1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Raman M (2015), Raman M (2015), Raman M (2015)	4
DHX15	5	TTC27	3	biochemical	Wan C (2015)	1
AMFR	2	FAF2	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Lee JN (2008), Lee JN (2008), Alexandru G (2008), Wang Q (2011), Xu Y (2013), Wang Q (2011), Christianson JC (2012), Christianson JC (2012), Zhang T (2015)	9
TRIM14	1	TTC27	3	bioid	Tan P (2017)	1
UBXN1	0	UBC	7	pull down, pull down, affinity chromatography technology, pull down, pull down, pull down	Wu-Baer F (2010), Fenner BJ (2009), Alexandru G (2008), LaLonde DP (2011), McNeill H (2004), Zhang X (2017)	6
FUS	0	DHX15	5	affinity chromatography technology	Wang T (2014)	1
ADRB2	0	UFD1	1	affinity chromatography technology	Roy SJ (2013)	1
EZH2	4	HUWE1	22	affinity chromatography technology	Hein MY (2015)	1
TTC26	2	IFT74	4	affinity chromatography technology	Boldt K (2016)	1
UBL4A	0	UFD1	1	affinity chromatography technology	Sowa ME (2009)	1
PTPRF	9	UFD1	1	biochemical	Wan C (2015)	1
UFD1	1	PLS3	1	affinity chromatography technology	Raman M (2015)	1
TP53	0	UBC	7	affinity chromatography technology, affinity chromatography technology	Ayroldi E (2014), Ke JY (2014)	2
UFD1	1	PPHLN1	0	two hybrid	Vinayagam A (2011)	1
NSFL1C	1	ASPSCR1	3	affinity chromatography technology, affinity chromatography technology	Raman M (2015), Huttlin EL (2017)	2
FAF1	1	VCPIP1	4	affinity chromatography technology	Alexandru G (2008)	1
GZMK	0	UFD1	1	enzymatic study	Guo Y (2010)	1
FAM189B	2	UBXN7	3	affinity chromatography technology	Huttlin EL (2017)	1
UBC	7	SUMO3	0	affinity chromatography technology	Sahin U (2014)	1
SVIP	1	AMFR	2	biochemical, affinity chromatography technology	Ballar P (2007), Ballar P (2007)	2
TTC26	2	NPLOC4	4	affinity chromatography technology	Raman M (2015)	1
SEM1	0	UBE3A	4	affinity chromatography technology, affinity chromatography technology	Besche HC (2014), Besche HC (2014)	2
NSFL1C	1	DHX15	5	biochemical	Kristensen AR (2012)	1
TP53	0	NFKBIA	0	affinity chromatography technology, two hybrid	Chang NS (2002), Chang NS (2002)	2
TRIM14	1	NSFL1C	1	bioid	Tan P (2017)	1
UBE2N	1	PLS3	1	affinity chromatography technology	Boldt K (2016)	1
FAF2	4	PSMD2	2	affinity chromatography technology, pull down	Suzuki M (2012), Suzuki M (2012)	2
UFD1	1	A2M	8	two hybrid	Vinayagam A (2011)	1
UBXN7	3	VCPIP1	4	affinity chromatography technology	Raman M (2015)	1
EZH2	4	VCP	6	affinity chromatography technology	Cao Q (2014)	1
TRIM14	1	NPLOC4	4	bioid	Tan P (2017)	1
UBXN1	0	VCPIP1	4	affinity chromatography technology	Alexandru G (2008)	1
DPH5	1	CD2AP	0	biochemical	Wan C (2015)	1
UBC	7	FAF2	4	affinity chromatography technology, affinity chromatography technology	Bish RA (2007), Alexandru G (2008)	2
MOV10	6	SH3KBP1	1	affinity chromatography technology	Castello A (2012)	1
KCNK16	3	UBXN7	3	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
UBXN7	3	ASPSCR1	3	affinity chromatography technology	Raman M (2015)	1
UBXN8	0	VCP	6	affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology	Alexandru G (2008), Madsen L (2011), Madsen L (2011), Madsen L (2014), Raman M (2015)	5
MOV10	6	PPHLN1	0	affinity chromatography technology	Castello A (2012)	1
HUWE1	22	CD2AP	0	biochemical	Kristensen AR (2012)	1
VCPIP1	4	HUWE1	22	affinity chromatography technology	Sowa ME (2009)	1
CFL1	0	UFD1	1	biochemical	Wan C (2015)	1
HUWE1	22	UNC45A	1	affinity chromatography technology	Thompson JW (2014)	1
CAV1	0	UBXN6	1	affinity chromatography technology, imaging technique	Kirchner P (2013), Kirchner P (2013)	2
UBC	7	NPLOC4	4	affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Wang B (2003), Bish RA (2007), Kristariyanto YA (2015), Zhang X (2017)	5
UBXN7	3	NSFL1C	1	affinity chromatography technology, affinity chromatography technology	Raman M (2015), Raman M (2015)	2
SPRTN	0	NSFL1C	1	affinity chromatography technology, affinity chromatography technology	Davis EJ (2012), Davis EJ (2012)	2
UFD1	1	PSMD2	2	affinity chromatography technology	Chen M (2011)	1
UFD1	1	UBAC2	1	affinity chromatography technology	Raman M (2015)	1
UFD1	1	DPH5	1	biochemical	Wan C (2015)	1
UBXN10	2	NPLOC4	4	affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Raman M (2015)	2
SEM1	0	NUB1	2	affinity chromatography technology	Besche HC (2014)	1
AMFR	2	VCP	6	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, unspecified method, affinity chromatography technology, two hybrid, pull down, unspecified method, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhong X (2004), Zhong X (2004), Lee JN (2008), Cao J (2007), Ballar P (2007), Ballar P (2007), Ye Y (2005), Ye Y (2005), Zhong X (2004), Yang H (2010), Yang H (2010), Ballar P (2010), Jo Y (2011), St-Pierre P (2012), Grelle G (2006), Scheich C (2007), Ballar P (2006), Haenzelmann P (2011), Haenzelmann P (2011), Haenzelmann P (2011), Wang Q (2011), Yu CC (2013), Erzurumlu Y (2013), Liu S (2013), Wang Q (2011), Grelle G (2006), Grelle G (2006), Grelle G (2006), Grelle G (2006), Christianson JC (2012), Zhang T (2015), Khodayari N (2017)	32
FLNB	11	UFD1	1	biochemical	Wan C (2015)	1
UBC	7	CAV1	0	affinity chromatography technology, imaging technique	Luo X (2017), Luo X (2017)	2
UBE2N	1	UFD1	1	biochemical	Havugimana PC (2012)	1
BTRC	1	EZH2	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sahasrabuddhe AA (2014), Sahasrabuddhe AA (2014), Huttlin EL (2017)	3
UFD1	1	DHX15	5	biochemical	Wan C (2015)	1
UFD1	1	HMGB1	0	affinity chromatography technology	Raman M (2015)	1
GZMK	0	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Guo Y (2010), Guo Y (2010), Guo Y (2010), Guo Y (2010)	4
UFD1	1	MASP1	3	two hybrid	Vinayagam A (2011)	1
UBXN6	1	VCPIP1	4	affinity chromatography technology	Alexandru G (2008)	1
TRIM14	1	UFD1	1	bioid	Tan P (2017)	1
UBC	7	DHX15	5	pull down	Nathan JA (2013)	1
FUS	0	LDHA	2	affinity chromatography technology	Wang T (2014)	1
UFD1	1	SNX1	2	two hybrid	Vinayagam A (2011)	1
AMFR	2	UBL4A	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Wang Q (2011), Wang Q (2011), Liu Y (2014), Liu Y (2014)	4
RDX	1	VCP	6	biochemical	Wan C (2015)	1
VCP	6	TP53	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yu CC (2013), Yu CC (2013), Fogeron ML (2013)	3
MOV10	6	BTRC	1	affinity chromatography technology	Castello A (2012)	1
ASNS	0	CD2AP	0	biochemical	Wan C (2015)	1
SUZ12	0	VCP	6	affinity chromatography technology	Cao Q (2014)	1
ERLIN2	2	PSMD2	2	affinity chromatography technology	Pearce MM (2007)	1
UBXN7	3	FAF1	1	affinity chromatography technology, affinity chromatography technology	Raman M (2015), Raman M (2015)	2
SELENOS	0	UFD1	1	affinity chromatography technology	Ye Y (2004)	1
BTRC	1	UFD1	1	affinity chromatography technology	Riemer A (2014)	1
IFT74	4	UBXN10	2	affinity chromatography technology, pull down, affinity chromatography technology	Raman M (2015), Raman M (2015), Raman M (2015)	3
CAV1	0	SELENOS	0	affinity chromatography technology	Chen SF (2013)	1
YOD1	0	FAF2	4	affinity chromatography technology	Ernst R (2009)	1
UFD1	1	TTC27	3	biochemical	Wan C (2015)	1
SPRTN	0	UBXN1	0	affinity chromatography technology	Ghosal G (2012)	1
USP13	2	FAF2	4	affinity chromatography technology	Sowa ME (2009)	1
HUWE1	22	PSMD7	1	affinity chromatography technology	Thompson JW (2014)	1
FAF1	1	AMFR	2	affinity chromatography technology	Alexandru G (2008)	1
CFL1	0	CAP1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Moriyama K (2002), Huttlin EL (2015), Huttlin EL (2017)	3
UFD1	1	NPLOC4	4	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, x-ray crystallography, biochemical, affinity chromatography technology, affinity chromatography technology	Botta A (2001), Lass A (2008), Vong QP (2005), Bruderer RM (2004), Havugimana PC (2012), Li JM (2013), Pye VE (2007), Wan C (2015), Raman M (2015), Raman M (2015)	10
BIRC5	1	UFD1	1	affinity chromatography technology, affinity chromatography technology	Vong QP (2005), Vong QP (2005)	2
SPRTN	0	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, imaging technique	Ghosal G (2012), Ghosal G (2012), Davis EJ (2012), Davis EJ (2012), Mosbech A (2012), Mosbech A (2012), Mosbech A (2012), Mosbech A (2012)	8
SLC17A2	0	ATG9A	5	affinity chromatography technology	Huttlin EL (2017)	1
EZH2	4	HSPB1	2	affinity chromatography technology	Cao Q (2014)	1
UBAC2	1	UBC	7	pull down, pull down, pull down	Christianson JC (2012), Lloyd SJ (2013), Zhang X (2017)	3
FAF2	4	CAV1	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
UBXN6	1	ASPSCR1	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Haines DS (2012), Huttlin EL (2015), Raman M (2015), Huttlin EL (2017)	4
RDX	1	PLS3	1	biochemical	Wan C (2015)	1
SVIP	1	SELENOS	0	affinity chromatography technology, affinity chromatography technology	Ballar P (2007), Ballar P (2007)	2
UBC	7	ERLIN2	2	affinity chromatography technology, affinity chromatography technology	Matsumoto M (2005), Jo Y (2011)	2
UBC	7	ARMC1	2	pull down	Zhang X (2017)	1
SEM1	0	NSFL1C	1	affinity chromatography technology	Besche HC (2014)	1
UFD1	1	TP53	0	two hybrid	Vinayagam A (2011)	1
IFT74	4	NPLOC4	4	affinity chromatography technology	Raman M (2015)	1
UFD1	1	RTCB	1	biochemical	Wan C (2015)	1
VCPIP1	4	UBC	7	enzymatic study, enzymatic study, pull down	Totsukawa G (2013), Mevissen TE (2013), Kwasna D (2018)	3
MOV10	6	DHX15	5	affinity chromatography technology	Castello A (2012)	1
PSMD7	1	PSMD2	2	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Sowa ME (2009), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
TP53	0	HUWE1	22	pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology	Chen D (2005), Chen D (2005), Chen D (2005), Chen D (2005), Rolfo A (2012), Rolfo A (2012)	6
HSPB1	2	STIP1	1	biochemical	Wan C (2015)	1
ADRB2	0	ERLIN2	2	affinity chromatography technology	Roy SJ (2013)	1
PDCD4	2	BTRC	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, bioid, affinity chromatography technology	Schmid T (2008), Dorrello NV (2006), Kroczynska B (2012), Kruiswijk F (2012), Blees JS (2012), Dorrello NV (2006), Coyaud E (2015), Loveless TB (2015), Coyaud E (2015), Huttlin EL (2017)	10
SEM1	0	UBL4A	0	affinity chromatography technology	Besche HC (2014)	1
MAP3K1	4	TP53	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Islam MR (2010), Islam MR (2010), Chipps E (2015), Chipps E (2015), Chipps E (2015)	5
UBXN6	1	PSMD2	2	pull down, affinity chromatography technology, biochemical	Madsen L (2008), Madsen L (2008), Madsen L (2008)	3
SUZ12	0	UFD1	1	affinity chromatography technology	Cao Q (2014)	1
FUS	0	VCP	6	affinity chromatography technology, affinity chromatography technology	Wang T (2014), Wang T (2014)	2
USP13	2	NPLOC4	4	affinity chromatography technology	Sowa ME (2009)	1
UBXN1	0	UNC45A	1	biochemical	Havugimana PC (2012)	1
UBC	7	UBL4A	0	affinity chromatography technology	Matsumoto M (2005)	1
VCPIP1	4	NSFL1C	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Alexandru G (2008), Uchiyama K (2002), Raman M (2015)	4
UBE3A	4	UFD1	1	biochemical	Havugimana PC (2012)	1
EZH2	4	NPLOC4	4	affinity chromatography technology	Cao Q (2014)	1
CAV1	0	VCP	6	affinity chromatography technology, imaging technique, affinity chromatography technology, pull down	Kirchner P (2013), Kirchner P (2013), Chen SF (2013), Chen SF (2013)	4
UFD1	1	SKP2	2	affinity chromatography technology, affinity chromatography technology	Chen M (2011), Chen M (2011)	2
LDHA	2	UFD1	1	biochemical	Wan C (2015)	1
SELENOS	0	UBXN8	0	affinity chromatography technology	Christianson JC (2012)	1
ITPR1	25	UFD1	1	affinity chromatography technology	Pearce MM (2007)	1
SUZ12	0	FLNB	11	affinity chromatography technology	Cao Q (2014)	1
HMGB1	0	UBE2N	1	affinity chromatography technology	Boldt K (2016)	1
UBC	7	PSMD7	1	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
PIK3CA	8	UFD1	1	two hybrid	Wang J (2008)	1
VCP	6	NFKBIA	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dai RM (1998), Dai RM (1998), Gao Y (2000), Hotta K (2013), Yu CC (2013), Li JM (2013), Li JM (2013), Schweitzer K (2016)	8
FUS	0	CFL1	0	affinity chromatography technology	Wang T (2014)	1
VCP	6	UBXN7	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, pull down	Alexandru G (2008), Alexandru G (2008), Alexandru G (2008), Alexandru G (2008), Alexandru G (2008), Besten Wd (2012), Raman M (2015), Li ZH (2017), Li ZH (2017)	9
UBXN8	0	NPLOC4	4	affinity chromatography technology	Alexandru G (2008)	1
KCNK16	3	NPLOC4	4	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
PTPRF	9	NPLOC4	4	biochemical	Wan C (2015)	1
FUS	0	RTCB	1	affinity chromatography technology	Wang T (2014)	1
NPLOC4	4	NFKBIA	0	affinity chromatography technology	Li JM (2013)	1
DCUN1D1	0	ASNS	0	affinity chromatography technology	Bennett EJ (2010)	1
TXLNA	3	IFT74	4	affinity chromatography technology	Huttlin EL (2017)	1
SLC17A2	0	UFD1	1	affinity chromatography technology	Huttlin EL (2017)	1
UBXN1	0	AMFR	2	affinity chromatography technology	Alexandru G (2008)	1
SELENOS	0	NPLOC4	4	affinity chromatography technology	Ballar P (2007)	1
MAP3K1	4	FAF2	4	enzymatic study	Charlaftis N (2014)	1
UFD1	1	TAF1C	5	two hybrid	Vinayagam A (2011)	1
UFD1	1	FUS	0	biochemical	Wan C (2015)	1
HSPB1	2	UBE2N	1	biochemical	Wan C (2015)	1
TXLNA	3	UFD1	1	biochemical	Havugimana PC (2012)	1
EZH2	4	FUS	0	affinity chromatography technology	Cao Q (2014)	1
MOV10	6	SUMO3	0	affinity chromatography technology	Castello A (2012)	1
TP53	0	HMGB1	0	affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down	Imamura T (2001), Imamura T (2001), Imamura T (2001), Imamura T (2001), Dintilhac A (2002)	5
UBXN1	0	UBE3A	4	affinity chromatography technology	Alexandru G (2008)	1
IFT74	4	VCP	6	affinity chromatography technology	Raman M (2015)	1
MAP3K1	4	DCUN1D1	0	enzymatic study	Charlaftis N (2014)	1
ITPR1	25	AMFR	2	affinity chromatography technology	Pearce MM (2007)	1
SH3KBP1	1	NPLOC4	4	biochemical	Wan C (2015)	1
SELENOS	0	AMFR	2	affinity chromatography technology, affinity chromatography technology	Ballar P (2007), Zhong Y (2011)	2
UBE3A	4	UBC	7	enzymatic study, enzymatic study, pull down	Schwarz SE (1998), Ronchi VP (2013), Zhang X (2017)	3
UBXN7	3	UFD1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Raman M (2015)	3
IFT74	4	UFD1	1	affinity chromatography technology	Raman M (2015)	1
HMOX1	1	PSMD2	2	affinity chromatography technology	Lin PH (2008)	1
UBC	7	PSMD2	2	pull down	Zhang X (2017)	1
SLC17A2	0	DEGS1	4	affinity chromatography technology	Huttlin EL (2017)	1
SEM1	0	PSMD7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Wei SJ (2008), Wei SJ (2008)	3
FAF2	4	NPLOC4	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Raman M (2015), Raman M (2015)	4
UBC	7	UBE2N	1	affinity chromatography technology, enzymatic study, enzymatic study, x-ray crystallography, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, pull down	Matsumoto M (2005), Scheper J (2010), Wu PY (2003), McKenna S (2003), Wiener R (2012), Ye Y (2003), Bish RA (2007), Juang YC (2012), Pastushok L (2007), Singh RK (2012), McKenna S (2001), McKenna S (2001)	12
TP53	0	UBE2N	1	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Laine A (2006), Laine A (2006), Laine A (2006), Topisirovic I (2009), Topisirovic I (2009)	5
GZMK	0	NPLOC4	4	enzymatic study	Guo Y (2010)	1
NPLOC4	4	UBAC2	1	affinity chromatography technology	Raman M (2015)	1
GARS	1	UBE2N	1	affinity chromatography technology	Boldt K (2016)	1
MOV10	6	UBXN8	0	affinity chromatography technology	Castello A (2012)	1
TP53	0	TAF1C	5	pull down	Zhai W (2000)	1
MAP3K1	4	NPLOC4	4	enzymatic study	Charlaftis N (2014)	1
MOV10	6	TXLNA	3	affinity chromatography technology	Castello A (2012)	1
HUWE1	22	UFD1	1	affinity chromatography technology	Thompson JW (2014)	1
RDX	1	STIP1	1	biochemical	Wan C (2015)	1
NGFR	3	CAV1	0	pull down	Bilderback TR (1999)	1
ATG9A	5	UFD1	1	affinity chromatography technology	Huttlin EL (2017)	1
UFD1	1	ARPC5L	0	biochemical	Wan C (2015)	1
MOV10	6	PSMD2	2	affinity chromatography technology	Castello A (2012)	1
HSPB1	2	UFD1	1	two hybrid	Katsogiannou M (2014)	1
UFD1	1	UNC45A	1	biochemical	Havugimana PC (2012)	1
FUS	0	UBC	7	affinity chromatography technology	Wang T (2014)	1
SELENOS	0	FAF2	4	affinity chromatography technology, affinity chromatography technology	Christianson JC (2012), Christianson JC (2012)	2
SV2C	2	UFD1	1	affinity chromatography technology	Huttlin EL (2017)	1
SPRTN	0	UFD1	1	affinity chromatography technology, affinity chromatography technology	Davis EJ (2012), Davis EJ (2012)	2
UFD1	1	TIAM2	1	two hybrid	Vinayagam A (2011)	1
AMFR	2	UBAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Christianson JC (2012), Christianson JC (2012), Christianson JC (2012), Zhang T (2015), Zhang T (2015)	5
SEM1	0	VCP	6	affinity chromatography technology, affinity chromatography technology	Besche HC (2014), Besche HC (2014)	2
RTCB	1	MTMR12	1	biochemical	Wan C (2015)	1
HUWE1	22	HSPB1	2	affinity chromatography technology, two hybrid, affinity chromatography technology	Thompson JW (2014), Katsogiannou M (2014), Katsogiannou M (2014)	3
SKP2	2	USP13	2	affinity chromatography technology	Chen M (2011)	1
UBE3A	4	ATG9A	5	two hybrid	Rolland T (2014)	1
HMOX1	1	UFD1	1	affinity chromatography technology	Lin PH (2008)	1
NPLOC4	4	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Lass A (2008), Ballar P (2007), Alexandru G (2008), Alexandru G (2008), Fernandez-Saiz V (2010), Noguchi M (2005), Bruderer RM (2004), Bruderer RM (2004), Lee JJ (2013), Erzurumlu Y (2013), Raman M (2015), Raman M (2015), Mountassif D (2015), Wang T (2016), Guo X (2017)	15
TRIM14	1	UBE2N	1	two hybrid	Tan P (2017)	1
FAF1	1	UBXN6	1	affinity chromatography technology	Raman M (2015)	1
FAM189B	2	VCP	6	affinity chromatography technology	Huttlin EL (2017)	1
SEM1	0	UBC	7	affinity chromatography technology	Besche HC (2014)	1
TP53	0	UBE3A	4	pull down, pull down, affinity chromatography technology, enzymatic study, enzymatic study, pull down, enzymatic study, pull down, affinity chromatography technology, pull down, enzymatic study, pull down, enzymatic study, enzymatic study, affinity chromatography technology, x-ray crystallography, enzymatic study	Nuber U (1998), Huibregtse JM (1993), Yang Y (2007), Kim HC (2009), Scheffner M (1994), Mishra A (2012), Burch L (2004), Ro HS (2006), Nakagawa S (2000), Nakagawa S (2000), Nakagawa S (2000), Huibregtse JM (1991), Honda R (1997), Huibregtse JM (1995), Martinez-Zapien D (2016), Martinez-Zapien D (2016), Rolfe M (1995)	17
EZH2	4	SUZ12	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Su IH (2005), Aoto T (2008), Hansen KH (2008), Li G (2010), Margueron R (2008), Margueron R (2008), Shen X (2008), Pasini D (2008), Pasini D (2008), Sarma K (2008), Xu B (2011), Xu B (2011), Avdic V (2011), Kaneko S (2010), Kaneko S (2010), Yap DB (2011), Lee ST (2011), Havugimana PC (2012), Sahasrabuddhe AA (2014), Wang L (2013), Wu L (2013), Pasini D (2010), Pasini D (2010), Pasini D (2010), Cao Q (2014), Cao Q (2014), Cao Q (2014), Cao Q (2014), Wan C (2015), Hein MY (2015), Bhatnagar S (2014), Bhatnagar S (2014), Zhao R (2015), Wienken M (2016), Huttlin EL (2017), Zhang H (2016), Zhang H (2016), Mahara S (2016), Hauri S (2016), Hauri S (2016)	40
HUWE1	22	PSMD2	2	affinity chromatography technology	Thompson JW (2014)	1
UBC	7	SH3KBP1	1	pull down, x-ray crystallography, pull down, x-ray crystallography, pull down, x-ray crystallography	Bezsonova I (2008), Korzhnev DM (2009), Ortega Roldan JL (2013), Ortega Roldan JL (2013), Stamenova SD (2007), Bezsonova I (2008)	6
VCPIP1	4	UFD1	1	affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Raman M (2015)	2
MOV10	6	VCPIP1	4	affinity chromatography technology	Castello A (2012)	1
UFD1	1	CHMP2A	3	two hybrid, pull down	Olmos Y (2015), Olmos Y (2015)	2
UFD1	1	VPS33B	2	biochemical	Havugimana PC (2012)	1
TXLNA	3	DHX15	5	biochemical	Wan C (2015)	1
FAF2	4	TTC27	3	affinity chromatography technology	Raman M (2015)	1
YOD1	0	UBC	7	pull down, enzymatic study, x-ray crystallography, enzymatic study, enzymatic study	Ernst R (2009), Mevissen TE (2013), Mevissen TE (2013), Ernst R (2009), Flierman D (2016)	5
UBC	7	ASPSCR1	3	affinity chromatography technology	Matsumoto M (2005)	1
TP53	0	MOV10	6	affinity chromatography technology	Li X (2015)	1
VCPIP1	4	NPLOC4	4	affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Raman M (2015)	2
UBC	7	HSPB1	2	affinity chromatography technology	Matsumoto M (2005)	1
UFD1	1	ANAPC2	0	two hybrid	Vinayagam A (2011)	1
ASNS	0	TTC27	3	biochemical	Wan C (2015)	1
BTRC	1	SUZ12	0	affinity chromatography technology, affinity chromatography technology	Sahasrabuddhe AA (2014), Huttlin EL (2017)	2
UFD1	1	CD2AP	0	biochemical	Wan C (2015)	1
HUWE1	22	HMGB1	0	affinity chromatography technology	Thompson JW (2014)	1
AMFR	2	UFD1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Cao J (2007), Cao J (2007), Cao J (2007), Cao J (2007)	4
FAF1	1	BTRC	1	affinity chromatography technology, affinity chromatography technology	Zhang L (2012), Zhang L (2012)	2
FAF2	4	UFD1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Raman M (2015), Raman M (2015)	4
FAF1	1	ASPSCR1	3	affinity chromatography technology	Raman M (2015)	1
HUWE1	22	PAPOLA	5	affinity chromatography technology	Thompson JW (2014)	1
EZH2	4	UFD1	1	affinity chromatography technology	Cao Q (2014)	1
MAP3K1	4	FLNB	11	affinity chromatography technology	Jeon YJ (2009)	1
USP13	2	AMFR	2	affinity chromatography technology, pull down, affinity chromatography technology	Liu Y (2014), Liu Y (2014), Liu Y (2014)	3
NPLOC4	4	UBE3A	4	biochemical	Kristensen AR (2012)	1
TRIM14	1	ASNS	0	bioid	Tan P (2017)	1
DCUN1D1	0	UBC	7	affinity chromatography technology, pull down, affinity chromatography technology	Bennett EJ (2010), Huang G (2014), Huang G (2014)	3
NUB1	2	PSMD2	2	pull down	Rani N (2012)	1
HSPB1	2	GARS	1	two hybrid	Katsogiannou M (2014)	1
SLC17A2	0	UBAC2	1	affinity chromatography technology	Huttlin EL (2017)	1
UFD1	1	NGFR	3	two hybrid	Vinayagam A (2011)	1
MAP3K1	4	NFKBIA	0	enzymatic study	Tu Z (2003)	1
UBL4A	0	HSPB1	2	affinity chromatography technology	Xu Y (2012)	1
TRIM14	1	UNC45A	1	bioid	Tan P (2017)	1
BTRC	1	3507	0	affinity chromatography technology	Sowa ME (2009)	1
UBXN8	0	UFD1	1	affinity chromatography technology	Alexandru G (2008)	1
UBL4A	0	VCP	6	affinity chromatography technology, affinity chromatography technology	Wang Q (2011), Xu Y (2012)	2
GARS	1	NPLOC4	4	biochemical	Wan C (2015)	1
MOV10	6	UBC	7	affinity chromatography technology	Castello A (2012)	1
FAF1	1	UBC	7	pull down, affinity chromatography technology, unspecified method, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, biochemical	Song EJ (2005), Lee JJ (2012), Song J (2009), Song J (2009), Song J (2009), Lee JJ (2013), Lee JJ (2013), Nathan JA (2013), Baron Y (2014), Alexandru G (2008), Lee JJ (2012)	11
ADRB2	0	UBXN8	0	affinity chromatography technology	Roy SJ (2013)	1
UBXN10	2	UFD1	1	affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Raman M (2015)	2
UFD1	1	MTMR12	1	biochemical	Wan C (2015)	1
UBL4A	0	HUWE1	22	affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Thompson JW (2014)	2
VCP	6	HUWE1	22	affinity chromatography technology, affinity chromatography technology	Yu CC (2013), Thompson JW (2014)	2
BTRC	1	TP53	0	affinity chromatography technology, affinity chromatography technology	Xia Y (2009), Verma S (2011)	2
UBXN6	1	NSFL1C	1	affinity chromatography technology	Raman M (2015)	1
ASPSCR1	3	UFD1	1	affinity chromatography technology	Alexandru G (2008)	1
NUB1	2	UBC	7	pull down, affinity chromatography technology	Nakayasu ES (2013), Nakayasu ES (2013)	2
BTRC	1	NSFL1C	1	bioid	Coyaud E (2015)	1
UBC	7	UFD1	1	pull down, x-ray crystallography, affinity chromatography technology, pull down	Nathan JA (2013), Park S (2005), Bish RA (2007), Zhang X (2017)	4
UFD1	1	ASNS	0	biochemical	Wan C (2015)	1
UBE3A	4	UNC45A	1	biochemical	Havugimana PC (2012)	1
UBL4A	0	FUS	0	affinity chromatography technology	Xu Y (2012)	1
TTC27	3	TXLNA	3	biochemical	Havugimana PC (2012)	1
TXLNA	3	FUS	0	biochemical	Wan C (2015)	1
MOV10	6	USP13	2	affinity chromatography technology	Castello A (2012)	1
UBXN10	2	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Raman M (2015), Raman M (2015)	3
VCP	6	PDCD4	2	affinity chromatography technology, affinity chromatography technology	Yu CC (2013), Yu CC (2013)	2
TMEM62	1	UFD1	1	affinity chromatography technology	Huttlin EL (2015)	1
ERLIN2	2	UFD1	1	affinity chromatography technology	Pearce MM (2007)	1
TTC27	3	CD2AP	0	biochemical	Wan C (2015)	1
DEGS1	4	UFD1	1	affinity chromatography technology	Huttlin EL (2015)	1
NUB1	2	VCP	6	affinity chromatography technology, pull down, pull down	Liu S (2013), Liu S (2013), Liu S (2013)	3
UBXN1	0	NPLOC4	4	affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008)	2
UBXN6	1	VCP	6	pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kern M (2009), Kern M (2009), Kern M (2009), Stapf C (2011), Stapf C (2011), Stapf C (2011), Alexandru G (2008), Haenzelmann P (2011), Haenzelmann P (2011), Allen MD (2006), Nagahama M (2009), Nagahama M (2009), Alexandru G (2012), Haines DS (2012), Yu CC (2013), Huttlin EL (2015), Madsen L (2014), Trusch F (2015), Raman M (2015), Raman M (2015), Guo X (2017), Guo X (2017), Huttlin EL (2017)	23
NSFL1C	1	FAF1	1	affinity chromatography technology	Raman M (2015)	1
UFD1	1	3507	0	two hybrid	Vinayagam A (2011)	1
VCPIP1	4	FAF2	4	affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Alexandru G (2008)	2
UBXN6	1	NPLOC4	4	affinity chromatography technology	Haines DS (2012)	1
UBXN10	2	NSFL1C	1	affinity chromatography technology	Raman M (2015)	1
SH3KBP1	1	CD2AP	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Tossidou I (2010), Gaidos G (2007), Huttlin EL (2017)	3
SVIP	1	VCP	6	biochemical, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, x-ray crystallography, pull down, unspecified method	Ballar P (2007), Ballar P (2007), Ballar P (2007), Wang Y (2011), Haenzelmann P (2011), Liu S (2013), Liu S (2013), Liu S (2013)	8
FAF2	4	HUWE1	22	affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Thompson JW (2014)	2
TTC26	2	UFD1	1	affinity chromatography technology	Raman M (2015)	1
MOV10	6	ARPC5L	0	affinity chromatography technology	Castello A (2012)	1
UBXN1	0	FAF1	1	affinity chromatography technology	Raman M (2015)	1
UFD1	1	NUBPL	0	affinity chromatography technology	Raman M (2015)	1
FAF1	1	UBL4A	0	affinity chromatography technology	Baron Y (2014)	1
CAP1	1	NPLOC4	4	biochemical	Wan C (2015)	1
SKP2	2	BTRC	1	affinity chromatography technology, pull down, affinity chromatography technology	Wei S (2012), Wei S (2012), Wei S (2012)	3
BTRC	1	HSPB1	2	affinity chromatography technology	Coyaud E (2015)	1
ADRB2	0	NPLOC4	4	affinity chromatography technology	Roy SJ (2013)	1
UBXN7	3	PSMD2	2	affinity chromatography technology	Alexandru G (2008)	1
UBL4A	0	ERLIN2	2	affinity chromatography technology	Xu Y (2012)	1
ATG9A	5	VCP	6	affinity chromatography technology	Huttlin EL (2017)	1
UBXN1	0	NSFL1C	1	biochemical	Kristensen AR (2012)	1
FUS	0	ARMC1	2	biochemical	Wan C (2015)	1
SLC17A2	0	VCP	6	affinity chromatography technology	Huttlin EL (2017)	1
CFL1	0	LDHA	2	biochemical	Wan C (2015)	1
ATG9A	5	AMFR	2	affinity chromatography technology	Huttlin EL (2017)	1
UBC	7	UBXN7	3	pull down, affinity chromatography technology, pull down, affinity chromatography technology	Kelsall IR (2013), Alexandru G (2008), Besten Wd (2012), Besten Wd (2012)	4
UBC	7	BTRC	1	affinity chromatography technology, enzymatic study	Matsumoto M (2005), Kumar KG (2007)	2
UFD1	1	NUB1	2	pull down	Liu S (2013)	1
ITPR1	25	ERLIN2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Pearce MM (2009), Pearce MM (2007), Wright FA (2015)	3
EZH2	4	ASPSCR1	3	affinity chromatography technology	Cao Q (2014)	1
PDCD4	2	UFD1	1	biochemical	Kristensen AR (2012)	1
UFD1	1	UBXN6	1	pull down	Nagahama M (2009)	1
MAP3K1	4	UFD1	1	enzymatic study	Charlaftis N (2014)	1
UBXN1	0	FAF2	4	affinity chromatography technology	Raman M (2015)	1
UBC	7	HUWE1	22	pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, enzymatic study	Nathan JA (2013), Bish RA (2007), Thompson JW (2014), Kristariyanto YA (2015), Zhang X (2017), Michel MA (2017)	6
VCP	6	UBXN1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, two hybrid, pull down, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), McNeill H (2004), LaLonde DP (2011), LaLonde DP (2011), LaLonde DP (2011), LaLonde DP (2011), Rolland T (2014), McNeill H (2004), Raman M (2015), Park ES (2017)	11
ASNS	0	NPLOC4	4	biochemical	Wan C (2015)	1
UFD1	1	CAP1	1	biochemical	Wan C (2015)	1
UFD1	1	PAPOLA	5	biochemical	Wan C (2015)	1
TP53	0	NUB1	2	affinity chromatography technology, affinity chromatography technology	Liu G (2010), Liu G (2010)	2
UBXN10	2	ASPSCR1	3	affinity chromatography technology	Raman M (2015)	1
FUS	0	NPLOC4	4	biochemical	Wan C (2015)	1
UFD1	1	NFKBIA	0	affinity chromatography technology	Li JM (2013)	1
BTRC	1	VCPIP1	4	bioid	Coyaud E (2015)	1
ITPR1	25	PSMD2	2	affinity chromatography technology	Pearce MM (2007)	1
USP13	2	UFD1	1	affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Chen M (2011)	2
NPLOC4	4	CD2AP	0	biochemical	Wan C (2015)	1
YOD1	0	UBE3A	4	enzymatic study	Mevissen TE (2013)	1
TP53	0	RAE1	0	affinity chromatography technology	Fogeron ML (2013)	1
UFD1	1	GARS	1	biochemical	Wan C (2015)	1
MTMR12	1	NPLOC4	4	biochemical	Wan C (2015)	1
UBXN1	0	UBXN7	3	affinity chromatography technology	Raman M (2015)	1
MOV10	6	DPH5	1	affinity chromatography technology	Castello A (2012)	1
UBXN1	0	UFD1	1	affinity chromatography technology	Alexandru G (2008)	1
FAM189B	2	NPLOC4	4	affinity chromatography technology	Huttlin EL (2017)	1
MOV10	6	UBL4A	0	affinity chromatography technology	Castello A (2012)	1
ADRB2	0	VCP	6	affinity chromatography technology	Roy SJ (2013)	1
VCP	6	NSFL1C	1	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, unspecified method, two hybrid, affinity chromatography technology, two hybrid, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Uchiyama K (2003), Uchiyama K (2003), Alexandru G (2008), Alexandru G (2008), Vinayagam A (2011), Madsen L (2011), Fernandez-Saiz V (2010), Noguchi M (2005), Uchiyama K (2002), Uchiyama K (2002), Uchiyama K (2002), Alexandru G (2012), Fogeron ML (2013), Grelle G (2006), Grelle G (2006), Grelle G (2006), Rolland T (2014), Besten Wd (2012), Madsen L (2014), Zhang X (2015), Wan C (2015), Hein MY (2015), Raman M (2015), Raman M (2015), Wang T (2016), Guo X (2017), Park ES (2017), Huttlin EL (2017)	28
UFD1	1	SUMO3	0	biochemical	Wan C (2015)	1
DCUN1D1	0	FUS	0	affinity chromatography technology	Bennett EJ (2010)	1
TRIM14	1	ERLIN2	2	bioid	Tan P (2017)	1
UBL4A	0	NPLOC4	4	affinity chromatography technology	Sowa ME (2009)	1
UBC	7	CD2AP	0	pull down, x-ray crystallography	Ortega Roldan JL (2013), Ortega Roldan JL (2013)	2
TRIM14	1	STIP1	1	bioid	Tan P (2017)	1
UBXN7	3	AMFR	2	affinity chromatography technology	Alexandru G (2008)	1
TTC26	2	VCP	6	affinity chromatography technology	Raman M (2015)	1
NSFL1C	1	UFD1	1	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Wan C (2015), Raman M (2015), Raman M (2015)	4
FAF2	4	UBAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Christianson JC (2012), Christianson JC (2012), Christianson JC (2012), Christianson JC (2012), Zhang T (2015), Zhang T (2015), Raman M (2015), Olzmann JA (2013), Huttlin EL (2017)	9
HUWE1	22	LDHA	2	affinity chromatography technology	Thompson JW (2014)	1
VCP	6	HSPB1	2	affinity chromatography technology	Yu CC (2013)	1
ARMC1	2	GARS	1	biochemical	Wan C (2015)	1
AMFR	2	NPLOC4	4	affinity chromatography technology, affinity chromatography technology	Wang Q (2011), Wang Q (2011)	2
UBAC2	1	ERLIN2	2	affinity chromatography technology	Christianson JC (2012)	1
SLC17A2	0	NPLOC4	4	affinity chromatography technology	Huttlin EL (2017)	1
VCPIP1	4	VCP	6	affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Totsukawa G (2011), Totsukawa G (2013), Totsukawa G (2013), Zhang X (2014), Raman M (2015)	6
ADRB2	0	UBC	7	affinity chromatography technology	Roy SJ (2013)	1
KCNK16	3	UFD1	1	affinity chromatography technology	Huttlin EL (2015)	1
DCUN1D1	0	UFD1	1	biochemical	Wan C (2015)	1
SPRTN	0	UBC	7	pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology, pull down, pull down	Machida Y (2012), Machida Y (2012), Mosbech A (2012), Mosbech A (2012), Mosbech A (2012), Centore RC (2012), Davis EJ (2012)	7
SEM1	0	HUWE1	22	affinity chromatography technology	Besche HC (2014)	1
SUZ12	0	FUS	0	affinity chromatography technology	Cao Q (2014)	1
FAM189B	2	UFD1	1	affinity chromatography technology	Huttlin EL (2017)	1
UBC	7	NSFL1C	1	pull down, affinity chromatography technology, affinity chromatography technology, pull down, pull down	Fenner BJ (2009), Shibata Y (2012), Alexandru G (2008), Raasi S (2005), Zhang X (2017)	5
TMEM62	1	NPLOC4	4	affinity chromatography technology	Huttlin EL (2015)	1
UBXN10	2	UBXN6	1	affinity chromatography technology	Raman M (2015)	1
TTC26	2	UBXN10	2	affinity chromatography technology, pull down, affinity chromatography technology	Raman M (2015), Raman M (2015), Raman M (2015)	3
STIP1	1	PLS3	1	biochemical	Wan C (2015)	1
FAF2	4	ERLIN2	2	affinity chromatography technology	Christianson JC (2012)	1
UFD1	1	STIP1	1	biochemical	Wan C (2015)	1
FAF2	4	UBE3A	4	affinity chromatography technology	Alexandru G (2008)	1
FAM189B	2	AMFR	2	affinity chromatography technology	Huttlin EL (2017)	1
ITPR1	25	VCP	6	affinity chromatography technology	Pearce MM (2009)	1
ASPSCR1	3	NPLOC4	4	affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Raman M (2015)	2
USP13	2	VCP	6	pull down, affinity chromatography technology	Liu Y (2014), Liu Y (2014)	2
UFD1	1	RDX	1	affinity chromatography technology	Raman M (2015)	1
SVIP	1	UFD1	1	biochemical	Ballar P (2007)	1
FLNB	11	VCP	6	biochemical	Havugimana PC (2012)	1
MOV10	6	SNX1	2	affinity chromatography technology	Castello A (2012)	1
YOD1	0	UFD1	1	affinity chromatography technology	Ernst R (2009)	1
ADRB2	0	AMFR	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Roy SJ (2013), Roy SJ (2013), Roy SJ (2013)	3
SVIP	1	NPLOC4	4	biochemical, affinity chromatography technology	Ballar P (2007), Ballar P (2007)	2
MAP3K1	4	UBXN7	3	enzymatic study	Charlaftis N (2014)	1
UBE3A	4	SUMO3	0	two hybrid	Vinayagam A (2011)	1
UBXN8	0	VCPIP1	4	affinity chromatography technology	Alexandru G (2008)	1
BTRC	1	NFKBIA	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, unspecified method, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, enzymatic study, enzymatic study, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, bioid, enzymatic study, protein complementation assay	Suzuki H (2000), Spencer E (1999), Spencer E (1999), Spencer E (1999), Suzuki H (1999), Suzuki H (1999), Kroll M (1999), Kroll M (1999), Yaron A (1998), Choi YS (2010), Banerjee S (2010), Banerjee S (2010), Banerjee S (2010), Da Silva-Ferrada E (2011), Tsuchiya Y (2010), Tsuchiya Y (2010), Keutgens A (2010), Winston JT (1999), Winston JT (1999), Winston JT (1999), Winston JT (1999), Surjit M (2012), Busino L (2012), Evrard-Todeschi N (2008), Furukawa M (2000), Kovacev J (2014), Chong RA (2014), Chong RA (2014), Shi M (2014), Shirane M (1999), Read MA (2000), Tan M (2010), Coyaud E (2015), Coyaud E (2015), Wu K (2016), Villalobos V (2010)	36
UBE2N	1	AMFR	2	two hybrid, two hybrid	van Wijk SJ (2009), Markson G (2009)	2
SPRTN	0	VCPIP1	4	affinity chromatography technology	Ghosal G (2012)	1
SPRTN	0	HUWE1	22	affinity chromatography technology	Kim MS (2013)	1
HSPB1	2	TP53	0	two hybrid, affinity chromatography technology, imaging technique	Stelzl U (2005), Sun Y (2007), Chen TC (2014)	3
SEM1	0	UFD1	1	affinity chromatography technology	Besche HC (2014)	1
UBXN1	0	UBL4A	0	affinity chromatography technology	Raman M (2015)	1
FAF1	1	UFD1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Haenzelmann P (2011), Lee JJ (2013), Raman M (2015), Raman M (2015)	6
UBXN6	1	FAF2	4	affinity chromatography technology	Haines DS (2012)	1
MOV10	6	UFD1	1	affinity chromatography technology	Castello A (2012)	1
YOD1	0	NPLOC4	4	affinity chromatography technology	Ernst R (2009)	1
YOD1	0	AMFR	2	affinity chromatography technology	Bernardi KM (2013)	1
ADRB2	0	PSMD2	2	affinity chromatography technology	Roy SJ (2013)	1
MOV10	6	UBXN6	1	affinity chromatography technology	Castello A (2012)	1
HSPB1	2	FLNB	11	two hybrid	Katsogiannou M (2014)	1
NSFL1C	1	NPLOC4	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Raman M (2015), Raman M (2015)	4
PSMD7	1	UFD1	1	biochemical	Havugimana PC (2012)	1
NGFR	3	TP53	0	affinity chromatography technology, affinity chromatography technology, pull down	Zhou X (2016), Zhou X (2016), Zhou X (2016)	3
FAF2	4	UNC45A	1	affinity chromatography technology	Raman M (2015)	1
ASPSCR1	3	VCPIP1	4	affinity chromatography technology	Alexandru G (2008)	1
GARS	1	SNX1	2	biochemical	Kristensen AR (2012)	1