PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000497685	[[118892363, 118892485], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913245], [118917903, 118917987], [118922763, 118922959]]	[[118906792, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913245], [118917903, 118917987], [118922763, 118922814]]
ENST00000264234	[[118892364, 118892485], [118905560, 118905657], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913245], [118917903, 118917987], [118922763, 118924000]]	[[118905588, 118905657], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913245], [118917903, 118917987], [118922763, 118922814]]
ENST00000479520	[[118892446, 118892485], [118894844, 118894956], [118905560, 118905657], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913105]]	[[118905588, 118905657], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913105]]
ENST00000494855	[[118892446, 118892485], [118905525, 118905657], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913165]]	[[118905588, 118905657], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913165]]
ENST00000460625	[[118905584, 118905657], [118906621, 118906822], [118909091, 118909166], [118909852, 118909951], [118913065, 118913245], [118917903, 118917987], [118922763, 118923988]]	[[118905588, 118905657], [118906621, 118906822], [118909091, 118909166], [118909852, 118909951], [118913065, 118913245], [118917903, 118917987], [118922763, 118922814]]
NM_006952	[[118892424, 118892485], [118905560, 118905657], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913245], [118917903, 118917987], [118922763, 118924000]]	[[118905588, 118905657], [118906621, 118906822], [118909091, 118909166], [118909828, 118909951], [118913065, 118913245], [118917903, 118917987], [118922763, 118922814]]

Promoter

Chrom	Start	End	Description
chr3	118892362	118892373	CAGE_peak_2_at_UPK1B_5end
chr3	118892394	118892403	CAGE_peak_3_at_UPK1B_5end
chr3	118892411	118892453	CAGE_peak_1_at_UPK1B_5end
chr3	118905564	118905595	CAGE_peak_4_at_UPK1B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I119184	119184272	119185915	0.82	[{'connected_gene': 'B4GALT4', 'score': 8.02}, {'connected_gene': 'UPK1B', 'score': 0.39}, {'connected_gene': 'ENSG00000251012', 'score': 0.28}, {'connected_gene': 'GC03M119181', 'score': 0.26}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.26}]
chr3	GH03I119181	119181954	119182115	0.73	[{'connected_gene': 'B4GALT4', 'score': 3.25}, {'connected_gene': 'UPK1B', 'score': 3.24}, {'connected_gene': 'ENSG00000251012', 'score': 0.29}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.26}, {'connected_gene': 'GC03M119181', 'score': 0.25}]
chr3	GH03I119218	119218698	119220068	0.2	[{'connected_gene': 'B4GALT4', 'score': 6.41}, {'connected_gene': 'GC03M119181', 'score': 0.44}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.44}, {'connected_gene': 'UPK1B', 'score': 0.25}]
chr3	GH03I119175	119175602	119177617	0.54	[{'connected_gene': 'UPK1B', 'score': 8.74}, {'connected_gene': 'ENSG00000251012', 'score': 0.31}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.25}]
chr3	GH03I119173	119173494	119173623	1.07	[{'connected_gene': 'UPK1B', 'score': 550.77}, {'connected_gene': 'ENSG00000251012', 'score': 0.31}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.23}]
chr3	GH03I119206	119206461	119207663	0.58	[{'connected_gene': 'UPK1B', 'score': 11.11}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.37}, {'connected_gene': 'GC03M119181', 'score': 0.34}]
chr3	GH03I119210	119210194	119212558	0.75	[{'connected_gene': 'IGSF11', 'score': 18.5}, {'connected_gene': 'B4GALT4', 'score': 12.85}, {'connected_gene': 'UPK1B', 'score': 11.09}, {'connected_gene': 'GC03M119181', 'score': 0.37}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.37}]
chr3	GH03I119194	119194033	119195446	0.31	[{'connected_gene': 'IGSF11', 'score': 14.96}, {'connected_gene': 'B4GALT4-AS1', 'score': 11.1}, {'connected_gene': 'B4GALT4', 'score': 6.25}, {'connected_gene': 'UPK1B', 'score': 0.34}, {'connected_gene': 'GC03M119181', 'score': 0.29}]
chr3	GH03I119146	119146010	119146069	0.61	[{'connected_gene': 'ENSG00000251012', 'score': 550.77}, {'connected_gene': 'IGSF11', 'score': 550.77}, {'connected_gene': 'C3orf30', 'score': 550.77}, {'connected_gene': 'UPK1B', 'score': 9.21}, {'connected_gene': 'GC03M119012', 'score': 0.13}]
chr3	GH03I119220	119220334	119220483	0.2	[{'connected_gene': 'GC03M119181', 'score': 0.44}, {'connected_gene': 'B4GALT4-AS1', 'score': 0.44}, {'connected_gene': 'B4GALT4', 'score': 0.34}, {'connected_gene': 'UPK1B', 'score': 0.25}]