PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000544907	[[26662627, 26662882], [26667334, 26667504], [26668262, 26668352], [26668429, 26668482], [26669272, 26669468], [26671389, 26672281]]	[[26667441, 26667504], [26668262, 26668352], [26668429, 26668482], [26669272, 26669468], [26671389, 26671626]]
ENST00000578158	[[26662678, 26662778], [26666433, 26666752], [26667334, 26667451]]	[[26666547, 26666752], [26667334, 26667451]]
ENST00000226225	[[26662729, 26662882], [26666433, 26666752], [26667334, 26667504], [26668262, 26668352], [26668429, 26668482], [26669272, 26669468], [26671389, 26674035]]	[[26666547, 26666752], [26667334, 26667504], [26668262, 26668352], [26668429, 26668482], [26669272, 26669468], [26671389, 26671626]]
ENST00000583213	[[26662786, 26662882], [26668262, 26668352], [26668429, 26668482], [26669272, 26669468], [26671389, 26671536]]	None
ENST00000582302	[[26663492, 26663582], [26666433, 26666752], [26667334, 26667504]]	[[26666547, 26666752], [26667334, 26667504]]
ENST00000577535	[[26667431, 26667504], [26668262, 26668352], [26668429, 26668482], [26669272, 26669538]]	[[26667441, 26667504], [26668262, 26668352], [26668429, 26668482], [26669272, 26669538]]
NM_021137	[[26662547, 26662882], [26666433, 26666752], [26667334, 26667504], [26668262, 26668352], [26668429, 26668482], [26669272, 26669468], [26671389, 26674035]]	[[26666547, 26666752], [26667334, 26667504], [26668262, 26668352], [26668429, 26668482], [26669272, 26669468], [26671389, 26671626]]

Promoter

Chrom	Start	End	Description
chr17	26662597	26662626	CAGE_peak_2_at_TNFAIP1_5end
chr17	26662709	26662720	CAGE_peak_3_at_TNFAIP1_5end
chr17	26662732	26662844	CAGE_peak_1_at_TNFAIP1_5end
chr17	26666646	26666660	CAGE_peak_4_at_TNFAIP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I028345	28345085	28348479	1.23	[{'connected_gene': 'VTN', 'score': 8.12}, {'connected_gene': 'PIR31294', 'score': 0.77}, {'connected_gene': 'PIR62966', 'score': 0.44}, {'connected_gene': 'TNFAIP1', 'score': 0.39}, {'connected_gene': 'POLDIP2', 'score': 0.39}]
chr17	GH17I028333	28333915	28339817	2.29	[{'connected_gene': 'TNFAIP1', 'score': 550.77}, {'connected_gene': 'IFT20', 'score': 550.77}, {'connected_gene': 'SUPT6H', 'score': 26.21}, {'connected_gene': 'ENSG00000264577', 'score': 24.74}, {'connected_gene': 'NUFIP2', 'score': 24.02}, {'connected_gene': 'ITM2BP1', 'score': 20.74}, {'connected_gene': 'RPL23A', 'score': 12.34}, {'connected_gene': 'TMEM97', 'score': 12.33}, {'connected_gene': 'NEK8', 'score': 12.23}, {'connected_gene': 'POLDIP2', 'score': 12.21}, {'connected_gene': 'TMEM199', 'score': 12.02}, {'connected_gene': 'LOC101927018', 'score': 11.86}, {'connected_gene': 'ENSG00000265474', 'score': 11.23}, {'connected_gene': 'ENSG00000265908', 'score': 10.58}, {'connected_gene': 'PHF12', 'score': 10.52}, {'connected_gene': 'RAB34', 'score': 10.21}, {'connected_gene': 'VTN', 'score': 7.78}, {'connected_gene': 'PIR55130', 'score': 0.44}]
chr17	GH17I028393	28393995	28399737	0.8	[{'connected_gene': 'POLDIP2', 'score': 23.36}, {'connected_gene': 'VTN', 'score': 11.72}, {'connected_gene': 'SARM1', 'score': 11.68}, {'connected_gene': 'TMEM199', 'score': 11.66}, {'connected_gene': 'TNFAIP1', 'score': 11.29}, {'connected_gene': 'IFT20', 'score': 11.29}, {'connected_gene': 'FOXN1', 'score': 10.81}, {'connected_gene': 'UNC119', 'score': 10.44}, {'connected_gene': 'PIGS', 'score': 10.43}, {'connected_gene': 'GC17M029117', 'score': 0.77}, {'connected_gene': 'SLC46A1', 'score': 0.39}, {'connected_gene': 'ENSG00000279532', 'score': 0.34}]
chr17	GH17I028380	28380262	28380431	0.92	[{'connected_gene': 'ITM2BP1', 'score': 16.8}, {'connected_gene': 'ENSG00000264577', 'score': 16.73}, {'connected_gene': 'SUPT6H', 'score': 16.35}, {'connected_gene': 'NUFIP2', 'score': 15.11}, {'connected_gene': 'ENSG00000265205', 'score': 14.85}, {'connected_gene': 'ENSG00000265908', 'score': 13.86}, {'connected_gene': 'PHF12', 'score': 12.25}, {'connected_gene': 'SLC46A1', 'score': 11.98}, {'connected_gene': 'RPL23A', 'score': 11.23}, {'connected_gene': 'SDF2', 'score': 11.21}, {'connected_gene': 'TNFAIP1', 'score': 11.17}, {'connected_gene': 'IFT20', 'score': 11.17}, {'connected_gene': 'PIGS', 'score': 10.31}, {'connected_gene': 'ENSG00000279532', 'score': 0.44}, {'connected_gene': 'SARM1', 'score': 0.37}, {'connected_gene': 'GC17M029117', 'score': 0.34}, {'connected_gene': 'ENSG00000258924', 'score': 0.34}]
chr17	GH17I028277	28277811	28279000	0.95	[{'connected_gene': 'PIR58208', 'score': 550.77}, {'connected_gene': 'GC17M029101', 'score': 550.77}, {'connected_gene': 'TNFAIP1', 'score': 10.9}, {'connected_gene': 'IFT20', 'score': 10.9}, {'connected_gene': 'NOS2', 'score': 3.97}, {'connected_gene': 'PIRC93', 'score': 0.44}, {'connected_gene': 'KRT18P55', 'score': 0.28}]
chr17	GH17I027980	27980000	27982177	1.14	[{'connected_gene': 'ENSG00000251818', 'score': 11.71}, {'connected_gene': 'ENSG00000202389', 'score': 11.7}, {'connected_gene': 'NLK', 'score': 7.0}, {'connected_gene': 'PYY2', 'score': 6.56}, {'connected_gene': 'TNFAIP1', 'score': 1.26}, {'connected_gene': 'LINC01992', 'score': 0.39}, {'connected_gene': 'GC17M027891', 'score': 0.17}, {'connected_gene': 'LYRM9', 'score': 0.17}]