PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000556029	[[98909289, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938007, 98938127], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98944157]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938007, 98938127], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98941636]]
ENST00000548911	[[98909356, 98909592], [98909748, 98909924], [98921663, 98921791]]	None
ENST00000343315	[[98909395, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98942606]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98941636]]
ENST00000266732	[[98909407, 98909924], [98921663, 98921790], [98925457, 98925616], [98926600, 98929412]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98926600, 98928120]]
ENST00000393053	[[98909408, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98940136, 98940225], [98941350, 98942735]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98940136, 98940225], [98941350, 98941636]]
ENST00000546828	[[98909409, 98909563], [98909741, 98909924], [98921663, 98921790], [98925457, 98925557]]	None
ENST00000261210	[[98909629, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931491]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931434]]
ENST00000549938	[[98910029, 98910295], [98921663, 98921790], [98925457, 98925616], [98926600, 98926744]]	None
ENST00000552831	[[98921306, 98921790], [98925457, 98925616], [98931252, 98931352]]	None
ENST00000547214	[[98921662, 98921790], [98925457, 98926050]]	None
ENST00000556678	[[98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938728, 98938839], [98940136, 98940225], [98941350, 98941479]]	[[98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938728, 98938839], [98940136, 98940225], [98941350, 98941479]]
ENST00000548223	[[98937979, 98938127], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98941642]]	None
ENST00000551987	[[98938416, 98938839], [98940136, 98940225], [98941350, 98941565]]	None
NM_003276	[[98909350, 98909924], [98921663, 98921790], [98925457, 98925616], [98926600, 98929412]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98926600, 98928120]]
NM_001032284	[[98909350, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98940136, 98940225], [98941350, 98944157]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98940136, 98940225], [98941350, 98941636]]
NM_001307975	[[98909350, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98944157]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98941636]]
NM_001032283	[[98909350, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938007, 98938127], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98944157]]	[[98909645, 98909924], [98921663, 98921790], [98925457, 98925616], [98931252, 98931350], [98938007, 98938127], [98938219, 98938315], [98938728, 98938839], [98940136, 98940225], [98941350, 98941636]]

Promoter

Chrom	Start	End	Description
chr12	98909260	98909273	CAGE_peak_4_at_TMPO_5end
chr12	98909351	98909454	CAGE_peak_1_at_TMPO_5end
chr12	98909460	98909474	CAGE_peak_2_at_TMPO_5end
chr12	98909520	98909531	CAGE_peak_3_at_TMPO_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I098421	98421042	98422365	0.2	[{'connected_gene': 'TMPO', 'score': 16.87}, {'connected_gene': 'LINC02453', 'score': 11.11}, {'connected_gene': 'RNU4-41P', 'score': 0.77}, {'connected_gene': 'GC12M098419', 'score': 0.77}]
chr12	GH12I098422	98422883	98423152	0.43	[{'connected_gene': 'TMPO', 'score': 11.34}, {'connected_gene': 'LINC02453', 'score': 11.11}, {'connected_gene': 'RNU4-41P', 'score': 0.77}, {'connected_gene': 'GC12M098419', 'score': 0.77}]
chr12	GH12I098499	98499346	98501739	1.19	[{'connected_gene': 'TMPO', 'score': 14.22}, {'connected_gene': 'SLC9A7P1', 'score': 8.04}, {'connected_gene': 'GC12P098505', 'score': 0.77}, {'connected_gene': 'LINC02453', 'score': 0.77}, {'connected_gene': 'GC12P098497', 'score': 0.77}]
chr12	GH12I098489	98489303	98489452	0.2	[{'connected_gene': 'TMPO', 'score': 11.82}, {'connected_gene': 'RNU4-41P', 'score': 10.17}, {'connected_gene': 'GC12M098479', 'score': 0.44}, {'connected_gene': 'GC12P098497', 'score': 0.44}, {'connected_gene': 'LINC02453', 'score': 0.39}]
chr12	GH12I098490	98489454	98493683	1.59	[{'connected_gene': 'TMPO', 'score': 17.13}, {'connected_gene': 'RNU4-41P', 'score': 10.17}, {'connected_gene': 'SLC9A7P1', 'score': 8.07}, {'connected_gene': 'GC12P098497', 'score': 0.44}, {'connected_gene': 'GC12M098479', 'score': 0.39}, {'connected_gene': 'LINC02453', 'score': 0.39}]
chr12	GH12I098521	98520201	98520400	0.88	[{'connected_gene': 'TMPO', 'score': 16.25}, {'connected_gene': 'RNU4-41P', 'score': 11.35}, {'connected_gene': 'GC12P098518', 'score': 0.77}, {'connected_gene': 'GC12M098524', 'score': 0.77}]
chr12	GH12I098512	98512629	98519609	2.51	[{'connected_gene': 'TMPO', 'score': 610.14}, {'connected_gene': 'TMPO-AS1', 'score': 555.99}, {'connected_gene': 'GC12M098515', 'score': 550.77}, {'connected_gene': 'GC12P098518', 'score': 550.77}, {'connected_gene': 'RNU4-41P', 'score': 11.36}, {'connected_gene': 'SLC9A7P1', 'score': 7.14}, {'connected_gene': 'LINC02453', 'score': 5.39}]
chr12	GH12I098148	98148920	98150376	0.56	[{'connected_gene': 'TMPO', 'score': 4.91}, {'connected_gene': 'GC12M098067', 'score': 0.2}, {'connected_gene': 'GC12M098270', 'score': 0.11}, {'connected_gene': 'ENSG00000258312', 'score': 0.11}]
chr12	GH12I098474	98474830	98476072	0.86	[{'connected_gene': 'LINC02453', 'score': 12.09}, {'connected_gene': 'TMPO', 'score': 11.35}, {'connected_gene': 'RNU4-41P', 'score': 10.59}, {'connected_gene': 'SLC9A7P1', 'score': 6.85}, {'connected_gene': 'GC12M098470', 'score': 0.77}, {'connected_gene': 'GC12M098479', 'score': 0.44}]
chr12	GH12I098527	98527303	98528358	0.31	[{'connected_gene': 'LINC02453', 'score': 11.54}, {'connected_gene': 'RNU4-41P', 'score': 11.4}, {'connected_gene': 'PPIAP8', 'score': 10.97}, {'connected_gene': 'SLC25A3', 'score': 10.96}, {'connected_gene': 'TMPO', 'score': 4.86}, {'connected_gene': 'GC12M098524', 'score': 0.77}, {'connected_gene': 'GC12M098549', 'score': 0.34}]
chr12	GH12I098592	98592385	98596646	2.07	[{'connected_gene': 'SLC25A3', 'score': 561.43}, {'connected_gene': 'GC12M098595', 'score': 550.77}, {'connected_gene': 'TMPO', 'score': 52.79}, {'connected_gene': 'IKBIP', 'score': 11.12}, {'connected_gene': 'APAF1', 'score': 11.12}, {'connected_gene': 'TMPO-AS1', 'score': 10.02}]
chr12	GH12I098643	98643095	98647237	2.06	[{'connected_gene': 'IKBIP', 'score': 572.77}, {'connected_gene': 'APAF1', 'score': 550.77}, {'connected_gene': 'TMPO', 'score': 21.72}, {'connected_gene': 'SLC25A3', 'score': 18.15}, {'connected_gene': 'PPIAP8', 'score': 11.31}, {'connected_gene': 'GC12P098649', 'score': 0.77}]
chr12	GH12I098463	98463141	98465397	1.01	[{'connected_gene': 'SLC9A7P1', 'score': 24.75}, {'connected_gene': 'LINC02453', 'score': 18.26}, {'connected_gene': 'TMPO', 'score': 10.81}, {'connected_gene': 'RNU4-41P', 'score': 10.29}, {'connected_gene': 'GC12M098464', 'score': 0.77}, {'connected_gene': 'GC12P098459', 'score': 0.77}]
chr12	GH12I098456	98456634	98457612	1.24	[{'connected_gene': 'SLC9A7P1', 'score': 565.49}, {'connected_gene': 'LINC02453', 'score': 12.16}, {'connected_gene': 'TMPO', 'score': 10.77}, {'connected_gene': 'GC12M098419', 'score': 0.29}]
chr12	GH12I098520	98520946	98521956	0.67	[{'connected_gene': 'RNU4-41P', 'score': 11.35}, {'connected_gene': 'TMPO', 'score': 6.78}, {'connected_gene': 'GC12P098518', 'score': 0.77}, {'connected_gene': 'GC12M098524', 'score': 0.77}]
chr12	GH12I098416	98416801	98420622	0.94	[{'connected_gene': 'RNU4-41P', 'score': 550.77}, {'connected_gene': 'LINC02453', 'score': 18.5}, {'connected_gene': 'TMPO', 'score': 11.33}, {'connected_gene': 'SLC9A7P1', 'score': 4.89}, {'connected_gene': 'GC12M098419', 'score': 0.44}]
chr12	GH12I098532	98532663	98534492	0.82	[{'connected_gene': 'RNU4-41P', 'score': 11.6}, {'connected_gene': 'LINC02453', 'score': 11.15}, {'connected_gene': 'SNORA53', 'score': 10.35}, {'connected_gene': 'IKBIP', 'score': 10.0}, {'connected_gene': 'APAF1', 'score': 10.0}, {'connected_gene': 'SLC9A7P1', 'score': 7.11}, {'connected_gene': 'GC12M098524', 'score': 0.44}, {'connected_gene': 'TMPO', 'score': 0.37}, {'connected_gene': 'GC12M098549', 'score': 0.37}]
chr12	GH12I098573	98573736	98575738	0.75	[{'connected_gene': 'GC12P098574', 'score': 550.77}, {'connected_gene': 'TMPO', 'score': 6.4}, {'connected_gene': 'SLC9A7P1', 'score': 5.07}, {'connected_gene': 'GC12M098576', 'score': 0.77}]
chr12	GH12I098509	98509163	98509332	0.87	[{'connected_gene': 'GC12M098507', 'score': 550.77}, {'connected_gene': 'TMPO', 'score': 0.44}]
chr12	GH12I098424	98424416	98425593	1.18	[{'connected_gene': 'GC12M098419', 'score': 550.77}, {'connected_gene': 'LINC02453', 'score': 18.73}, {'connected_gene': 'TMPO', 'score': 11.34}, {'connected_gene': 'SLC9A7P1', 'score': 5.11}, {'connected_gene': 'RNU4-41P', 'score': 0.44}]
chr12	GH12I098525	98525698	98526518	0.31	[{'connected_gene': 'GC12M098524', 'score': 550.77}, {'connected_gene': 'LINC02453', 'score': 11.54}, {'connected_gene': 'RNU4-41P', 'score': 11.4}, {'connected_gene': 'SLC25A3', 'score': 10.96}, {'connected_gene': 'PPIAP8', 'score': 10.96}, {'connected_gene': 'TMPO', 'score': 5.03}, {'connected_gene': 'GC12M098549', 'score': 0.34}]
chr12	GH12I098466	98466383	98466532	0.2	[{'connected_gene': 'GC12M098464', 'score': 550.77}, {'connected_gene': 'SLC9A7P1', 'score': 24.75}, {'connected_gene': 'LINC02453', 'score': 11.4}, {'connected_gene': 'TMPO', 'score': 10.52}, {'connected_gene': 'RNU4-41P', 'score': 10.18}, {'connected_gene': 'GC12P098459', 'score': 0.44}]
chr12	GH12I098502	98502463	98505331	1.82	[{'connected_gene': 'GC12P098505', 'score': 550.77}, {'connected_gene': 'TRD-GTC1-1', 'score': 550.77}, {'connected_gene': 'LINC02453', 'score': 550.77}, {'connected_gene': 'TRW-CCA4-1', 'score': 550.77}, {'connected_gene': 'TMPO', 'score': 18.11}, {'connected_gene': 'SLC9A7P1', 'score': 10.28}, {'connected_gene': 'SLC25A3', 'score': 5.47}]