PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296795	[[186990305, 186990402], [186997766, 186998214], [186999993, 187000185], [187003473, 187005326], [187005798, 187009223]]	[[186997773, 186998214], [186999993, 187000185], [187003473, 187005326], [187005798, 187006027]]
ENST00000513189	[[186990308, 186990402], [186997766, 186998214], [186999993, 187000185], [187003473, 187003704], [187003896, 187004087]]	[[186997773, 186998214], [186999993, 187000185], [187003473, 187003704], [187003896, 187004087]]
ENST00000512264	[[187002764, 187005326], [187005798, 187006178]]	None
ENST00000504367	[[187002770, 187002982], [187003473, 187005326], [187005798, 187006043]]	[[187003671, 187005326], [187005798, 187006027]]
ENST00000508051	[[187002772, 187003002], [187003473, 187003871]]	None
NM_003265	[[186990308, 186990402], [186997766, 186998214], [186999993, 187000185], [187003473, 187005326], [187005798, 187006252]]	[[186997773, 186998214], [186999993, 187000185], [187003473, 187005326], [187005798, 187006027]]

Promoter

Chrom	Start	End	Description
chr4	186990298	186990342	CAGE_peak_1_at_TLR3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I185835	185835467	185842375	1.5	[{'connected_gene': 'SORBS2', 'score': 17.75}, {'connected_gene': 'TLR3', 'score': 5.3}, {'connected_gene': 'CCDC110', 'score': 4.91}, {'connected_gene': 'RPSAP70', 'score': 4.86}, {'connected_gene': 'LOC101928929', 'score': 0.21}, {'connected_gene': 'GC04M185710', 'score': 0.13}, {'connected_gene': 'ENSG00000207497', 'score': 0.13}]
chr4	GH04I186028	186028554	186032903	0.83	[{'connected_gene': 'TLR3', 'score': 9.99}, {'connected_gene': 'CFAP97', 'score': 4.68}, {'connected_gene': 'RNU4-64P', 'score': 0.77}]
chr4	GH04I186067	186067667	186070048	1.72	[{'connected_gene': 'TLR3', 'score': 550.77}, {'connected_gene': 'RNU4-64P', 'score': 0.26}]
chr4	GH04I186049	186049837	186051365	0.2	[{'connected_gene': 'FAM149A', 'score': 11.26}, {'connected_gene': 'ENSG00000253013', 'score': 10.8}, {'connected_gene': 'TLR3', 'score': 0.37}, {'connected_gene': 'RNU4-64P', 'score': 0.34}]
chr4	GH04I186133	186133027	186133136	0.46	[{'connected_gene': 'FAM149A', 'score': 11.45}, {'connected_gene': 'TLR3', 'score': 10.78}, {'connected_gene': 'ENSG00000253013', 'score': 0.77}, {'connected_gene': 'RPSAP70', 'score': 0.34}]
chr4	GH04I186143	186143972	186145868	1.7	[{'connected_gene': 'FAM149A', 'score': 587.19}, {'connected_gene': 'CYP4V2', 'score': 11.52}, {'connected_gene': 'TLR3', 'score': 10.75}, {'connected_gene': 'ENSG00000253013', 'score': 0.39}, {'connected_gene': 'RPSAP70', 'score': 0.39}]
chr4	GH04I186150	186150067	186150296	0.46	[{'connected_gene': 'FAM149A', 'score': 17.23}, {'connected_gene': 'ENSG00000253013', 'score': 11.83}, {'connected_gene': 'CYP4V2', 'score': 11.12}, {'connected_gene': 'TLR3', 'score': 10.74}, {'connected_gene': 'RPSAP70', 'score': 0.44}]
chr4	GH04I186038	186038307	186038436	0.64	[{'connected_gene': 'RNU4-64P', 'score': 0.39}, {'connected_gene': 'TLR3', 'score': 0.29}]
chr4	GH04I186027	186027884	186028132	0.2	[{'connected_gene': 'RNU4-64P', 'score': 550.77}, {'connected_gene': 'TLR3', 'score': 0.26}]
chr4	GH04I186058	186058807	186058936	0.49	[{'connected_gene': 'ENSG00000253013', 'score': 11.19}, {'connected_gene': 'CYP4V2', 'score': 10.26}, {'connected_gene': 'SORBS2', 'score': 9.76}, {'connected_gene': 'TLR3', 'score': 0.39}, {'connected_gene': 'RNU4-64P', 'score': 0.29}]
chr4	GH04I186080	186080787	186082070	0.58	[{'connected_gene': 'GC04P186084', 'score': 550.77}, {'connected_gene': 'GC04P186083', 'score': 550.77}, {'connected_gene': 'GC04P186085', 'score': 550.77}, {'connected_gene': 'GC04P186087', 'score': 550.77}, {'connected_gene': 'GC04P186086', 'score': 550.77}, {'connected_gene': 'ENSG00000253013', 'score': 10.71}, {'connected_gene': 'CYP4V2', 'score': 9.71}, {'connected_gene': 'TLR3', 'score': 0.39}]
chr4	GH04I186078	186078587	186079927	0.49	[{'connected_gene': 'ENSG00000253013', 'score': 10.69}, {'connected_gene': 'CYP4V2', 'score': 9.7}, {'connected_gene': 'FAT1', 'score': 5.46}, {'connected_gene': 'GC04P186084', 'score': 0.77}, {'connected_gene': 'GC04P186083', 'score': 0.77}, {'connected_gene': 'GC04P186085', 'score': 0.77}, {'connected_gene': 'GC04P186087', 'score': 0.77}, {'connected_gene': 'GC04P186086', 'score': 0.77}, {'connected_gene': 'TLR3', 'score': 0.39}]