PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377103	[[23026269, 23030378]]	[[23028413, 23030141]]
NM_000361	[[23026269, 23030301]]	[[23028413, 23030141]]

Promoter

Chrom	Start	End	Description
chr20	23029233	23029266	CAGE_peak_2_at_THBD_5end
chr20	23029353	23029362	CAGE_peak_9_at_THBD_5end
chr20	23029606	23029614	CAGE_peak_17_at_THBD_5end
chr20	23029620	23029640	CAGE_peak_5_at_THBD_5end
chr20	23029668	23029678	CAGE_peak_14_at_THBD_5end
chr20	23030296	23030315	CAGE_peak_1_at_THBD_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I023047	23047457	23052407	2.42	[{'connected_gene': 'THBD', 'score': 553.69}, {'connected_gene': 'GC20P023049', 'score': 550.77}, {'connected_gene': 'CD93', 'score': 5.15}, {'connected_gene': 'GZF1', 'score': 1.3}, {'connected_gene': 'GC20P023047', 'score': 0.77}, {'connected_gene': 'GC20P023071', 'score': 0.34}]
chr20	GH20I022761	22761738	22765375	1.37	[{'connected_gene': 'THBD', 'score': 2.0}, {'connected_gene': 'LOC105372567', 'score': 0.44}, {'connected_gene': 'KRT18P3', 'score': 0.31}]
chr20	GH20I023245	23245600	23246200	1.32	[{'connected_gene': 'NXT1', 'score': 24.39}, {'connected_gene': 'THBD', 'score': 13.13}, {'connected_gene': 'CD93', 'score': 12.79}, {'connected_gene': 'NAPB', 'score': 3.12}, {'connected_gene': 'ENSG00000230387', 'score': 0.22}, {'connected_gene': 'ENSG00000277901', 'score': 0.18}]
chr20	GH20I023366	23366001	23367312	1.42	[{'connected_gene': 'NAPB', 'score': 17.8}, {'connected_gene': 'CSTL1', 'score': 6.55}, {'connected_gene': 'CD93', 'score': 2.07}, {'connected_gene': 'GZF1', 'score': 1.58}, {'connected_gene': 'THBD', 'score': 1.32}, {'connected_gene': 'RNA5SP479', 'score': 0.39}, {'connected_gene': 'GC20M023381', 'score': 0.39}]
chr20	GH20I023119	23119069	23120200	1.03	[{'connected_gene': 'CD93', 'score': 32.98}, {'connected_gene': 'THBD', 'score': 1.58}, {'connected_gene': 'GZF1', 'score': 1.16}, {'connected_gene': 'LINC00656', 'score': 0.39}]
chr20	GH20I023102	23102096	23107978	1.19	[{'connected_gene': 'CD93', 'score': 28.3}, {'connected_gene': 'THBD', 'score': 3.32}, {'connected_gene': 'GZF1', 'score': 1.69}, {'connected_gene': 'LINC00656', 'score': 0.31}]
chr20	GH20I023094	23094852	23095284	0.86	[{'connected_gene': 'CD93', 'score': 4.92}, {'connected_gene': 'THBD', 'score': 4.43}, {'connected_gene': 'GZF1', 'score': 1.84}, {'connected_gene': 'LINC00656', 'score': 0.28}]
chr20	GH20I023080	23080477	23088517	2.23	[{'connected_gene': 'CD93', 'score': 574.34}, {'connected_gene': 'THBD', 'score': 6.51}, {'connected_gene': 'GZF1', 'score': 2.74}, {'connected_gene': 'ENSG00000279447', 'score': 0.39}]
chr20	GH20I023097	23096580	23097803	0.8	[{'connected_gene': 'CD93', 'score': 5.14}, {'connected_gene': 'THBD', 'score': 3.02}, {'connected_gene': 'LINC00656', 'score': 0.28}]
chr20	GH20I023077	23077414	23079995	0.54	[{'connected_gene': 'CD93', 'score': 6.51}, {'connected_gene': 'THBD', 'score': 5.39}, {'connected_gene': 'ENSG00000279447', 'score': 0.44}]
chr20	GH20I023141	23141005	23163013	1.83	[{'connected_gene': 'CD93', 'score': 43.97}, {'connected_gene': 'NXT1', 'score': 25.67}, {'connected_gene': 'THBD', 'score': 17.71}, {'connected_gene': 'ENSG00000230387', 'score': 7.44}, {'connected_gene': 'GZF1', 'score': 3.46}, {'connected_gene': 'CST3', 'score': 1.55}, {'connected_gene': 'ENSG00000279164', 'score': 0.77}, {'connected_gene': 'RNA5SP478', 'score': 0.44}, {'connected_gene': 'LOC100505664', 'score': 0.44}]
chr20	GH20I023224	23224818	23226106	1.2	[{'connected_gene': 'CD93', 'score': 14.91}, {'connected_gene': 'ENSG00000230387', 'score': 8.87}, {'connected_gene': 'CST3', 'score': 3.74}, {'connected_gene': 'THBD', 'score': 2.43}, {'connected_gene': 'GZF1', 'score': 1.37}, {'connected_gene': 'ENSG00000277901', 'score': 0.15}]
chr20	GH20I023059	23059712	23063083	1.34	[{'connected_gene': 'CD93', 'score': 20.05}, {'connected_gene': 'ENSG00000234646', 'score': 11.11}, {'connected_gene': 'LOC101929707', 'score': 10.93}, {'connected_gene': 'THBD', 'score': 8.13}, {'connected_gene': 'GC20P023071', 'score': 0.39}, {'connected_gene': 'GC20P023049', 'score': 0.39}]
chr20	GH20I023129	23129001	23134624	1.58	[{'connected_gene': 'LINC00656', 'score': 550.77}, {'connected_gene': 'CD93', 'score': 38.66}, {'connected_gene': 'NXT1', 'score': 10.23}, {'connected_gene': 'ENSG00000234832', 'score': 10.23}, {'connected_gene': 'ENSG00000230387', 'score': 4.37}, {'connected_gene': 'THBD', 'score': 2.15}, {'connected_gene': 'GZF1', 'score': 1.26}]
chr20	GH20I023048	23047099	23047133	0.2	[{'connected_gene': 'GC20P023047', 'score': 550.77}, {'connected_gene': 'THBD', 'score': 0.77}]
chr20	GH20I023046	23046584	23046753	0.52	[{'connected_gene': 'GC20P023047', 'score': 550.77}, {'connected_gene': 'CD93', 'score': 11.07}, {'connected_gene': 'THBD', 'score': 0.77}, {'connected_gene': 'SSTR4', 'score': 0.39}]