PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375370	[[114239055, 114239203], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114292132, 114292211], [114294434, 114295785]]	[[114240152, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114292132, 114292211], [114294434, 114294582]]
ENST00000494812	[[114291465, 114291557], [114292132, 114292211], [114294434, 114294999]]	None
ENST00000538138	[[114239012, 114239045], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114292132, 114292199], [114294434, 114294713]]	[[114277578, 114277601], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114292132, 114292199], [114294434, 114294582]]
ENST00000475254	[[114239035, 114239203], [114239894, 114239992], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287600]]	None
ENST00000464794	[[114239053, 114239203], [114240088, 114240164], [114240280, 114240498]]	None
ENST00000465174	[[114239057, 114239203], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286220], [114287434, 114287600], [114288204, 114288314]]	None
ENST00000544902	[[114239587, 114239742], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114291934, 114292211], [114294434, 114294625]]	[[114277578, 114277601], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114291934, 114292211], [114294434, 114294582]]
ENST00000408980	[[114239647, 114239742], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290311]]	[[114240152, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290311]]
ENST00000453989	[[114239740, 114239992], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287602]]	[[114240152, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287602]]
NR_026580	[[114239002, 114239045], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114292132, 114292199], [114294434, 114295788]]	None
NM_007111	[[114239055, 114239203], [114240088, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114292132, 114292211], [114294434, 114295788]]	[[114240152, 114240164], [114265310, 114265377], [114277494, 114277601], [114285937, 114286059], [114287434, 114287600], [114288204, 114288348], [114288848, 114288917], [114290291, 114290443], [114290848, 114291015], [114292132, 114292211], [114294434, 114294582]]

Promoter

Chrom	Start	End	Description
chr13	114238987	114238994	CAGE_peak_2_at_TFDP1_5end
chr13	114238997	114239077	CAGE_peak_1_at_TFDP1_5end
chr13	114239734	114239752	CAGE_peak_5_at_TFDP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I113553	113553186	113553335	0.31	[{'connected_gene': 'GRTP1', 'score': 14.84}, {'connected_gene': 'DCUN1D2', 'score': 11.02}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.66}, {'connected_gene': 'GRTP1-AS1', 'score': 10.03}, {'connected_gene': 'ENSG00000276248', 'score': 0.31}, {'connected_gene': 'TFDP1', 'score': 0.29}, {'connected_gene': 'TMCO3', 'score': 0.21}]
chr13	GH13I113583	113583800	113586295	1.95	[{'connected_gene': 'TFDP1', 'score': 550.77}, {'connected_gene': 'CDC16', 'score': 19.17}, {'connected_gene': 'TUBGCP3', 'score': 18.63}, {'connected_gene': 'GRK1', 'score': 13.92}, {'connected_gene': 'PCID2', 'score': 12.39}, {'connected_gene': 'GAS6', 'score': 12.15}, {'connected_gene': 'GAS6-AS1', 'score': 10.32}, {'connected_gene': 'TMCO3', 'score': 9.86}, {'connected_gene': 'PIR60549', 'score': 0.44}]
chr13	GH13I113582	113582946	113583095	0.56	[{'connected_gene': 'TFDP1', 'score': 550.77}, {'connected_gene': 'TMCO3', 'score': 5.54}, {'connected_gene': 'ENSG00000276248', 'score': 0.22}]
chr13	GH13I113586	113586626	113586775	0.2	[{'connected_gene': 'TFDP1', 'score': 0.77}, {'connected_gene': 'PIR60549', 'score': 0.44}]
chr13	GH13I113584	113583266	113583402	0.49	[{'connected_gene': 'TFDP1', 'score': 550.77}, {'connected_gene': 'ENSG00000276248', 'score': 0.22}]
chr13	GH13I113604	113604358	113605311	0.59	[{'connected_gene': 'GRK1', 'score': 14.25}, {'connected_gene': 'PIR60549', 'score': 0.39}, {'connected_gene': 'TFDP1', 'score': 0.34}, {'connected_gene': 'PIR44469', 'score': 0.25}, {'connected_gene': 'GC13P113655', 'score': 0.25}]
chr13	GH13I113610	113610034	113610728	0.31	[{'connected_gene': 'GRK1', 'score': 17.09}, {'connected_gene': 'PIR60549', 'score': 0.37}, {'connected_gene': 'TFDP1', 'score': 0.31}, {'connected_gene': 'PIR44469', 'score': 0.26}, {'connected_gene': 'GC13P113655', 'score': 0.26}]
chr13	GH13I113609	113609402	113609557	0.44	[{'connected_gene': 'GRK1', 'score': 13.14}, {'connected_gene': 'DCUN1D2', 'score': 1.79}, {'connected_gene': 'TMCO3', 'score': 1.64}, {'connected_gene': 'PIR60549', 'score': 0.37}, {'connected_gene': 'TFDP1', 'score': 0.34}, {'connected_gene': 'PIR44469', 'score': 0.26}, {'connected_gene': 'GC13P113655', 'score': 0.26}]
chr13	GH13I113623	113623390	113624537	0.46	[{'connected_gene': 'GRK1', 'score': 13.98}, {'connected_gene': 'DCUN1D2', 'score': 10.03}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.02}, {'connected_gene': 'PIR60549', 'score': 0.29}, {'connected_gene': 'PIR44469', 'score': 0.29}, {'connected_gene': 'GC13P113655', 'score': 0.29}, {'connected_gene': 'TFDP1', 'score': 0.28}]
chr13	GH13I113615	113615801	113617815	1.36	[{'connected_gene': 'GRK1', 'score': 14.17}, {'connected_gene': 'DCUN1D2', 'score': 13.56}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.8}, {'connected_gene': 'TMCO3', 'score': 10.69}, {'connected_gene': 'PIR60549', 'score': 0.34}, {'connected_gene': 'TFDP1', 'score': 0.29}, {'connected_gene': 'PIR44469', 'score': 0.28}, {'connected_gene': 'GC13P113655', 'score': 0.28}]
chr13	GH13I113628	113628433	113630197	0.31	[{'connected_gene': 'GRK1', 'score': 15.72}, {'connected_gene': 'TMCO3', 'score': 10.83}, {'connected_gene': 'PIR44469', 'score': 0.34}, {'connected_gene': 'GC13P113655', 'score': 0.34}, {'connected_gene': 'PIR60549', 'score': 0.28}, {'connected_gene': 'TFDP1', 'score': 0.26}]
chr13	GH13I113639	113639804	113640338	0.38	[{'connected_gene': 'PCID2', 'score': 19.03}, {'connected_gene': 'CDC16', 'score': 19.0}, {'connected_gene': 'CHAMP1', 'score': 11.91}, {'connected_gene': 'DCUN1D2-AS', 'score': 9.78}, {'connected_gene': 'PIR44469', 'score': 0.39}, {'connected_gene': 'GC13P113655', 'score': 0.39}, {'connected_gene': 'PIR60549', 'score': 0.25}, {'connected_gene': 'TFDP1', 'score': 0.22}]
chr13	GH13I113634	113634426	113634575	0.2	[{'connected_gene': 'DCUN1D2', 'score': 10.34}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.33}, {'connected_gene': 'PIR44469', 'score': 0.37}, {'connected_gene': 'GC13P113655', 'score': 0.37}, {'connected_gene': 'PIR60549', 'score': 0.26}, {'connected_gene': 'TFDP1', 'score': 0.25}]
chr13	GH13I113631	113631110	113632328	0.2	[{'connected_gene': 'DCUN1D2', 'score': 10.34}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.33}, {'connected_gene': 'PIR44469', 'score': 0.34}, {'connected_gene': 'GC13P113655', 'score': 0.34}, {'connected_gene': 'PIR60549', 'score': 0.28}, {'connected_gene': 'TFDP1', 'score': 0.25}]
chr13	GH13I113638	113638875	113639260	0.38	[{'connected_gene': 'DCUN1D2', 'score': 10.15}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.13}, {'connected_gene': 'PIR44469', 'score': 0.37}, {'connected_gene': 'GC13P113655', 'score': 0.37}, {'connected_gene': 'PIR60549', 'score': 0.25}, {'connected_gene': 'TFDP1', 'score': 0.23}]
chr13	GH13I113616	113615244	113615644	0.31	[{'connected_gene': 'DCUN1D2', 'score': 10.82}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.8}, {'connected_gene': 'TMCO3', 'score': 6.42}, {'connected_gene': 'PIR60549', 'score': 0.34}, {'connected_gene': 'TFDP1', 'score': 0.29}, {'connected_gene': 'PIR44469', 'score': 0.28}, {'connected_gene': 'GC13P113655', 'score': 0.28}]
chr13	GH13I113619	113619380	113620457	0.31	[{'connected_gene': 'DCUN1D2', 'score': 10.96}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.29}, {'connected_gene': 'TMCO3', 'score': 9.41}, {'connected_gene': 'PIR60549', 'score': 0.31}, {'connected_gene': 'PIR44469', 'score': 0.29}, {'connected_gene': 'GC13P113655', 'score': 0.29}, {'connected_gene': 'TFDP1', 'score': 0.28}]
chr13	GH13I113596	113596229	113597160	0.2	[{'connected_gene': 'TMCO3', 'score': 10.69}, {'connected_gene': 'PIR60549', 'score': 0.77}, {'connected_gene': 'TFDP1', 'score': 0.39}, {'connected_gene': 'PIR44469', 'score': 0.22}, {'connected_gene': 'GC13P113655', 'score': 0.22}]
chr13	GH13I113606	113606413	113608792	1.2	[{'connected_gene': 'TMCO3', 'score': 11.1}, {'connected_gene': 'DCUN1D2', 'score': 2.71}, {'connected_gene': 'PIR60549', 'score': 0.37}, {'connected_gene': 'TFDP1', 'score': 0.34}, {'connected_gene': 'PIR44469', 'score': 0.25}, {'connected_gene': 'GC13P113655', 'score': 0.25}]
chr13	GH13I113562	113562179	113563175	0.92	[{'connected_gene': 'TMCO3', 'score': 13.53}, {'connected_gene': 'DCUN1D2', 'score': 5.67}, {'connected_gene': 'TFDP1', 'score': 0.34}, {'connected_gene': 'ENSG00000276248', 'score': 0.28}]
chr13	GH13I113544	113544035	113548955	0.98	[{'connected_gene': 'TMCO3', 'score': 36.25}, {'connected_gene': 'DCUN1D2', 'score': 5.52}, {'connected_gene': 'ENSG00000267868', 'score': 5.09}, {'connected_gene': 'ENSG00000276248', 'score': 0.37}, {'connected_gene': 'TFDP1', 'score': 0.28}]
chr13	GH13I113557	113557601	113557800	0.46	[{'connected_gene': 'TMCO3', 'score': 24.87}, {'connected_gene': 'DCUN1D2', 'score': 17.0}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.65}, {'connected_gene': 'GRTP1', 'score': 10.03}, {'connected_gene': 'GRTP1-AS1', 'score': 10.03}, {'connected_gene': 'TFDP1', 'score': 0.31}, {'connected_gene': 'ENSG00000276248', 'score': 0.29}]
chr13	GH13I113617	113617984	113618940	0.2	[{'connected_gene': 'TMCO3', 'score': 10.98}, {'connected_gene': 'DCUN1D2', 'score': 10.96}, {'connected_gene': 'DCUN1D2-AS', 'score': 10.3}, {'connected_gene': 'PIR60549', 'score': 0.31}, {'connected_gene': 'TFDP1', 'score': 0.29}, {'connected_gene': 'PIR44469', 'score': 0.28}, {'connected_gene': 'GC13P113655', 'score': 0.28}]
chr13	GH13I113531	113531072	113534827	0.49	[{'connected_gene': 'TMCO3', 'score': 37.4}, {'connected_gene': 'DCUN1D2', 'score': 16.92}, {'connected_gene': 'DCUN1D2-AS', 'score': 11.62}, {'connected_gene': 'ADPRHL1', 'score': 7.05}, {'connected_gene': 'ENSG00000276248', 'score': 0.44}, {'connected_gene': 'TFDP1', 'score': 0.23}]
chr13	GH13I113640	113640583	113640791	0.2	[{'connected_gene': 'PIR44469', 'score': 0.39}, {'connected_gene': 'GC13P113655', 'score': 0.39}, {'connected_gene': 'PIR60549', 'score': 0.25}, {'connected_gene': 'TFDP1', 'score': 0.22}]
chr13	GH13I113527	113527401	113528600	0.2	[{'connected_gene': 'ENSG00000276248', 'score': 550.77}, {'connected_gene': 'GC13P113528', 'score': 550.77}, {'connected_gene': 'TMCO3', 'score': 46.29}, {'connected_gene': 'DCUN1D2', 'score': 16.65}, {'connected_gene': 'DCUN1D2-AS', 'score': 11.35}, {'connected_gene': 'ADPRHL1', 'score': 11.01}, {'connected_gene': 'TFDP1', 'score': 0.22}]