PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000575672	[[4307186, 4308799]]	None
ENST00000204517	[[4307186, 4308250], [4310090, 4310246], [4310455, 4310596], [4311779, 4311950], [4312324, 4312423], [4312536, 4312702], [4322658, 4323076]]	[[4308055, 4308250], [4310090, 4310246], [4310455, 4310596], [4311779, 4311950], [4312324, 4312423], [4312536, 4312702], [4322658, 4322747]]
ENST00000575320	[[4307187, 4308250], [4310090, 4310596], [4311779, 4311950], [4312324, 4312423], [4312536, 4317188]]	None
ENST00000574639	[[4308189, 4308250], [4310090, 4310246], [4310455, 4310596], [4322658, 4322895]]	[[4310550, 4310596], [4322658, 4322747]]
ENST00000573476	[[4310455, 4310596], [4311779, 4311950], [4312324, 4312423], [4312536, 4312702], [4318048, 4318082], [4322658, 4322832]]	[[4311834, 4311950], [4312324, 4312423], [4312536, 4312702], [4318048, 4318082], [4322658, 4322747]]
ENST00000575300	[[4310498, 4310596], [4311779, 4312423], [4312536, 4312702], [4322658, 4323076]]	None
ENST00000572393	[[4311779, 4311950], [4312324, 4312423], [4312536, 4312702], [4313667, 4313738]]	[[4311779, 4311950], [4312324, 4312423], [4312536, 4312611]]
NM_003223	[[4307186, 4308250], [4310090, 4310246], [4310455, 4310596], [4311779, 4311950], [4312324, 4312423], [4312536, 4312702], [4322658, 4323001]]	[[4308055, 4308250], [4310090, 4310246], [4310455, 4310596], [4311779, 4311950], [4312324, 4312423], [4312536, 4312702], [4322658, 4322747]]

Promoter

Chrom	Start	End	Description
chr16	4322832	4322907	CAGE_peak_1_at_TFAP4_5end
chr16	4322948	4322975	CAGE_peak_3_at_TFAP4_5end
chr16	4323015	4323067	CAGE_peak_2_at_TFAP4_5end
chr16	4323246	4323299	CAGE_peak_5_at_TFAP4_5end
chr16	4323301	4323317	CAGE_peak_7_at_TFAP4_5end
chr16	4323323	4323333	CAGE_peak_4_at_TFAP4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I004270	4270487	4274942	2.64	[{'connected_gene': 'TFAP4', 'score': 552.45}, {'connected_gene': 'GC16P004274', 'score': 550.77}, {'connected_gene': 'ZNF75A', 'score': 53.97}, {'connected_gene': 'ZNF500', 'score': 49.57}, {'connected_gene': 'CREBBP', 'score': 31.96}, {'connected_gene': 'ANKS3', 'score': 26.12}, {'connected_gene': 'ENSG00000261938', 'score': 23.48}, {'connected_gene': 'TIGD7', 'score': 18.51}, {'connected_gene': 'CLUAP1', 'score': 13.18}, {'connected_gene': 'ZNF597', 'score': 12.81}, {'connected_gene': 'ENSG00000263235', 'score': 11.29}, {'connected_gene': 'ZNF174', 'score': 11.09}, {'connected_gene': 'MTCO1P28', 'score': 10.81}, {'connected_gene': 'LINC01569', 'score': 10.77}, {'connected_gene': 'MTND1P8', 'score': 10.08}, {'connected_gene': 'ZSCAN32', 'score': 9.89}, {'connected_gene': 'CDIP1', 'score': 2.77}, {'connected_gene': 'HMOX2', 'score': 1.77}, {'connected_gene': 'PAM16', 'score': 1.41}, {'connected_gene': 'MGRN1', 'score': 1.37}, {'connected_gene': 'UBALD1', 'score': 1.29}, {'connected_gene': 'GC16M004260', 'score': 0.39}]
chr16	GH16I004271	4270327	4270329	0.58	[{'connected_gene': 'TFAP4', 'score': 0.77}, {'connected_gene': 'GC16M004260', 'score': 0.44}]
chr16	GH16I004263	4263182	4265322	1.17	[{'connected_gene': 'LINC01569', 'score': 7.19}, {'connected_gene': 'GC16M004260', 'score': 0.77}, {'connected_gene': 'TFAP4', 'score': 0.44}]
chr16	GH16I004261	4261680	4261849	0.69	[{'connected_gene': 'GC16M004260', 'score': 550.77}, {'connected_gene': 'TFAP4', 'score': 0.39}]
chr16	GH16I003625	3625556	3627260	0.89	[{'connected_gene': 'GC16M003627', 'score': 550.77}, {'connected_gene': 'NLRC3', 'score': 21.28}, {'connected_gene': 'ZNF263', 'score': 11.04}, {'connected_gene': 'TFAP4', 'score': 10.51}, {'connected_gene': 'DNASE1', 'score': 10.28}, {'connected_gene': 'GC16P003615', 'score': 0.39}]
chr16	GH16I004257	4257479	4258747	0.71	[{'connected_gene': 'GC16M004257', 'score': 550.77}, {'connected_gene': 'CREBBP', 'score': 10.51}, {'connected_gene': 'LINC01569', 'score': 6.15}, {'connected_gene': 'LOC105371063', 'score': 0.77}, {'connected_gene': 'TFAP4', 'score': 0.39}]
chr16	GH16I004260	4260012	4261067	0.72	[{'connected_gene': 'GC16M004257', 'score': 550.77}, {'connected_gene': 'GC16M004260', 'score': 550.77}, {'connected_gene': 'LINC01569', 'score': 7.83}, {'connected_gene': 'TFAP4', 'score': 0.39}]