PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000290378	[[35080296, 35082756], [35083314, 35083496], [35084290, 35084482], [35084608, 35084770], [35085445, 35085770], [35086880, 35087031], [35087706, 35088340]]	[[35082612, 35082756], [35083314, 35083496], [35084290, 35084482], [35084608, 35084770], [35085445, 35085770], [35086880, 35087009]]
ENST00000557860	[[35083358, 35083496], [35084290, 35084482], [35084608, 35084770], [35084908, 35085052]]	None
ENST00000560563	[[35083901, 35084482], [35084608, 35084723]]	None
NM_005159	[[35080296, 35082756], [35083314, 35083496], [35084290, 35084482], [35084608, 35084770], [35085445, 35085770], [35086880, 35087031], [35087706, 35087927]]	[[35082612, 35082756], [35083314, 35083496], [35084290, 35084482], [35084608, 35084770], [35085445, 35085770], [35086880, 35087009]]

Promoter

Chrom	Start	End	Description
chr15	35084643	35084652	CAGE_peak_9_at_ACTC1_5end
chr15	35084709	35084723	CAGE_peak_3_at_ACTC1_5end
chr15	35084738	35084747	CAGE_peak_6_at_ACTC1_5end
chr15	35086926	35086948	CAGE_peak_4_at_ACTC1_5end
chr15	35086988	35086997	CAGE_peak_7_at_ACTC1_5end
chr15	35087019	35087042	CAGE_peak_5_at_ACTC1_5end
chr15	35087070	35087134	CAGE_peak_2_at_ACTC1_5end
chr15	35087742	35087757	CAGE_peak_1_at_ACTC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I034736	34736659	34738595	0.2	[{'connected_gene': 'ACTC1', 'score': 11.62}, {'connected_gene': 'GJD2', 'score': 0.37}, {'connected_gene': 'LINC02252', 'score': 0.2}]
chr15	GH15I034854	34854637	34856250	0.56	[{'connected_gene': 'ACTC1', 'score': 10.97}, {'connected_gene': 'GJD2', 'score': 9.49}, {'connected_gene': 'LOC101928174', 'score': 9.49}, {'connected_gene': 'ENSG00000259181', 'score': 5.87}, {'connected_gene': 'ZNF770', 'score': 4.87}, {'connected_gene': 'LOC100132824', 'score': 0.77}, {'connected_gene': 'RPL36AP8', 'score': 0.17}, {'connected_gene': 'AQR', 'score': 0.14}]
chr15	GH15I034788	34788628	34789852	0.51	[{'connected_gene': 'ACTC1', 'score': 0.44}, {'connected_gene': 'LOC101928174', 'score': 0.29}]
chr15	GH15I034790	34790057	34801628	2.23	[{'connected_gene': 'ACTC1', 'score': 556.72}, {'connected_gene': 'ENSG00000259181', 'score': 4.96}, {'connected_gene': 'LOC101928174', 'score': 0.26}]
chr15	GH15I034836	34836749	34838009	0.6	[{'connected_gene': 'ACTC1', 'score': 11.59}, {'connected_gene': 'LOC100132824', 'score': 5.29}, {'connected_gene': 'GC15P034846', 'score': 0.44}, {'connected_gene': 'GC15M034809', 'score': 0.31}]
chr15	GH15I034818	34818674	34819376	0.2	[{'connected_gene': 'ACTC1', 'score': 12.51}, {'connected_gene': 'GC15M034809', 'score': 0.39}, {'connected_gene': 'GC15P034846', 'score': 0.31}]
chr15	GH15I034817	34817914	34818640	0.31	[{'connected_gene': 'ACTC1', 'score': 12.51}, {'connected_gene': 'GC15M034809', 'score': 0.39}, {'connected_gene': 'GC15P034846', 'score': 0.31}]
chr15	GH15I034718	34718723	34730630	1.16	[{'connected_gene': 'GJD2', 'score': 20.27}, {'connected_gene': 'ACTC1', 'score': 20.15}, {'connected_gene': 'LOC101928174', 'score': 11.61}, {'connected_gene': 'AQR', 'score': 9.37}, {'connected_gene': 'LINC02252', 'score': 0.23}]
chr15	GH15I034708	34708374	34710366	0.93	[{'connected_gene': 'GJD2', 'score': 17.99}, {'connected_gene': 'ACTC1', 'score': 17.85}, {'connected_gene': 'LOC101928174', 'score': 11.12}, {'connected_gene': 'AQR', 'score': 9.4}, {'connected_gene': 'LINC02252', 'score': 0.28}]
chr15	GH15I034701	34701180	34702574	0.62	[{'connected_gene': 'GJD2', 'score': 11.2}, {'connected_gene': 'LOC101928174', 'score': 11.2}, {'connected_gene': 'ACTC1', 'score': 5.51}, {'connected_gene': 'LINC02252', 'score': 0.29}]
chr15	GH15I034804	34804320	34804469	0.4	[{'connected_gene': 'GJD2', 'score': 10.59}, {'connected_gene': 'LOC101928174', 'score': 10.59}, {'connected_gene': 'GC15M034809', 'score': 0.77}, {'connected_gene': 'ACTC1', 'score': 0.44}]
chr15	GH15I034802	34802330	34804313	0.51	[{'connected_gene': 'GJD2', 'score': 10.59}, {'connected_gene': 'LOC101928174', 'score': 10.59}, {'connected_gene': 'GC15M034809', 'score': 0.77}, {'connected_gene': 'ACTC1', 'score': 0.44}]