PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000380377	[[76986990, 76987323], [76989090, 76989177], [77004066, 77004172], [77072028, 77072185]]	[[76987242, 76987323], [76989090, 76989177], [77004066, 77004172], [77072028, 77072081]]
ENST00000306388	[[76987065, 76989177], [77004066, 77004172], [77072028, 77072111]]	[[76988946, 76989177], [77004066, 77004172], [77072028, 77072081]]
ENST00000520361	[[76987072, 76987323], [77004066, 77004172], [77072028, 77072117]]	[[76987242, 76987323], [77004066, 77004172], [77072028, 77072081]]
ENST00000518338	[[76987091, 76987323], [76989090, 76989177], [77001390, 77001459], [77004066, 77004172], [77072028, 77072085]]	[[76987242, 76987323], [76989090, 76989177], [77001390, 77001459], [77004066, 77004172], [77072028, 77072081]]
ENST00000522370	[[76987228, 76987323], [76989090, 76989177], [77004066, 77004172], [77164457, 77164604]]	[[76987242, 76987323], [76989090, 76989177], [77004066, 77004153]]
ENST00000520039	[[76989090, 76989177], [77072028, 77072098]]	[[76989149, 76989177], [77072028, 77072081]]
ENST00000518218	[[76987065, 76987323], [76989090, 76989177], [77004066, 77004438]]	None
ENST00000517679	[[76987065, 76987323], [76989090, 76989177], [77004066, 77004172], [77011048, 77011142]]	[[76987242, 76987323], [76989090, 76989177], [77004066, 77004172], [77011048, 77011134]]
ENST00000517881	[[76987083, 76987323], [76989090, 76989177], [76990070, 76990102]]	None
NM_001297738	[[76986993, 76989177], [77004066, 77004172], [77072028, 77072185]]	[[76988946, 76989177], [77004066, 77004172], [77072028, 77072081]]
NM_001297740	[[76986993, 76987323], [77004066, 77004172], [77072028, 77072185]]	[[76987242, 76987323], [77004066, 77004172], [77072028, 77072081]]
NM_004607	[[76986994, 76987323], [76989090, 76989177], [77004066, 77004172], [77072028, 77072185]]	[[76987242, 76987323], [76989090, 76989177], [77004066, 77004172], [77072028, 77072081]]

Promoter

Chrom	Start	End	Description
chr5	77072098	77072139	CAGE_peak_2_at_TBCA_5end
chr5	77072145	77072190	CAGE_peak_1_at_TBCA_5end
chr5	77072305	77072314	CAGE_peak_6_at_TBCA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I077959	77959669	77961283	0.6	[{'connected_gene': 'TBCA', 'score': 21.76}, {'connected_gene': 'ALDH7A1P1', 'score': 16.13}, {'connected_gene': 'OTP', 'score': 10.55}, {'connected_gene': 'ENSG00000253572', 'score': 0.39}, {'connected_gene': 'TRQ-TTG7-1', 'score': 0.21}]
chr5	GH05I077761	77761717	77761866	0.2	[{'connected_gene': 'TBCA', 'score': 11.11}, {'connected_gene': 'OTP', 'score': 10.88}, {'connected_gene': 'GC05M077761', 'score': 0.77}, {'connected_gene': 'GC05M077749', 'score': 0.44}]
chr5	GH05I077672	77672050	77672183	0.22	[{'connected_gene': 'TBCA', 'score': 1.29}, {'connected_gene': 'GC05M077675', 'score': 0.44}, {'connected_gene': 'OTP', 'score': 0.29}]
chr5	GH05I077774	77773927	77777145	2.04	[{'connected_gene': 'TBCA', 'score': 563.56}, {'connected_gene': 'LOC105379045', 'score': 550.77}, {'connected_gene': 'PIR43480', 'score': 550.77}, {'connected_gene': 'OTP', 'score': 10.08}]
chr5	GH05I077935	77935801	77936433	1.14	[{'connected_gene': 'TBCA', 'score': 11.48}, {'connected_gene': 'ENSG00000253572', 'score': 0.39}, {'connected_gene': 'GC05M077895', 'score': 0.31}, {'connected_gene': 'LOC101929154', 'score': 0.23}]
chr5	GH05I077937	77937201	77938000	0.63	[{'connected_gene': 'TBCA', 'score': 11.48}, {'connected_gene': 'ENSG00000253572', 'score': 0.44}, {'connected_gene': 'GC05M077895', 'score': 0.31}, {'connected_gene': 'LOC101929154', 'score': 0.23}]
chr5	GH05I078778	78778194	78780763	1.07	[{'connected_gene': 'TBCA', 'score': 10.49}, {'connected_gene': 'LHFPL2', 'score': 0.44}, {'connected_gene': 'GC05P078984', 'score': 0.08}, {'connected_gene': 'ARSB', 'score': 0.08}]
chr5	GH05I077912	77912519	77912898	0.4	[{'connected_gene': 'TBCA', 'score': 11.81}, {'connected_gene': 'HMGB1P21', 'score': 4.41}, {'connected_gene': 'GC05M077895', 'score': 0.44}, {'connected_gene': 'LOC101929154', 'score': 0.31}, {'connected_gene': 'ENSG00000253572', 'score': 0.29}, {'connected_gene': 'GC05P077817', 'score': 0.16}]
chr5	GH05I077724	77724780	77726683	0.71	[{'connected_gene': 'TBCA', 'score': 10.69}, {'connected_gene': 'GC05M077749', 'score': 0.31}, {'connected_gene': 'GC05P077690', 'score': 0.28}]
chr5	GH05I077843	77843897	77845200	0.95	[{'connected_gene': 'TBCA', 'score': 0.34}, {'connected_gene': 'GC05P077817', 'score': 0.31}]
chr5	GH05I077850	77850034	77850278	0.51	[{'connected_gene': 'TBCA', 'score': 0.37}, {'connected_gene': 'GC05P077817', 'score': 0.29}]
chr5	GH05I077864	77864801	77866000	0.43	[{'connected_gene': 'TBCA', 'score': 0.77}, {'connected_gene': 'GC05P077817', 'score': 0.25}]
chr5	GH05I077784	77784801	77785200	0.5	[{'connected_gene': 'ACTBP2', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 17.45}, {'connected_gene': 'GC05P077817', 'score': 0.29}]
chr5	GH05I077845	77845919	77849307	0.82	[{'connected_gene': 'RPL7P23', 'score': 10.02}, {'connected_gene': 'TBCA', 'score': 0.34}, {'connected_gene': 'GC05P077817', 'score': 0.31}]
chr5	GH05I077730	77730401	77730669	0.35	[{'connected_gene': 'RPL7P23', 'score': 10.07}, {'connected_gene': 'GC05M077749', 'score': 0.34}, {'connected_gene': 'GC05P077690', 'score': 0.26}, {'connected_gene': 'TBCA', 'score': 0.12}]
chr5	GH05I077851	77851201	77853412	2.2	[{'connected_gene': 'RPL7P23', 'score': 9.71}, {'connected_gene': 'TBCA', 'score': 0.37}, {'connected_gene': 'GC05P077817', 'score': 0.29}]
chr5	GH05I077166	77166546	77169812	1.12	[{'connected_gene': 'ALDH7A1P1', 'score': 24.85}, {'connected_gene': 'RPL7P23', 'score': 11.0}, {'connected_gene': 'TBCA', 'score': 10.49}, {'connected_gene': 'PDE8B', 'score': 5.13}, {'connected_gene': 'HMGB1P35', 'score': 0.34}, {'connected_gene': 'ZBED3-AS1', 'score': 0.18}]
chr5	GH05I077681	77681200	77681402	0.48	[{'connected_gene': 'OTP', 'score': 17.62}, {'connected_gene': 'TBCA', 'score': 12.33}, {'connected_gene': 'GC05M077675', 'score': 0.77}, {'connected_gene': 'GC05P077690', 'score': 0.44}]
chr5	GH05I077862	77862546	77864042	0.2	[{'connected_gene': 'OTP', 'score': 9.57}, {'connected_gene': 'TBCA', 'score': 0.44}, {'connected_gene': 'GC05P077817', 'score': 0.25}]
chr5	GH05I077777	77777617	77777766	0.57	[{'connected_gene': 'LOC105379045', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 10.94}, {'connected_gene': 'OTP', 'score': 10.08}, {'connected_gene': 'ACTBP2', 'score': 0.44}]
chr5	GH05I077946	77946572	77946832	1.06	[{'connected_gene': 'ENSG00000253572', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 11.98}, {'connected_gene': 'LOC101929154', 'score': 0.21}, {'connected_gene': 'TRQ-TTG7-1', 'score': 0.18}]
chr5	GH05I077905	77905501	77907371	0.59	[{'connected_gene': 'GC05M077895', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 11.82}, {'connected_gene': 'GC05M077894', 'score': 0.39}, {'connected_gene': 'LOC101929154', 'score': 0.34}, {'connected_gene': 'GC05P077817', 'score': 0.17}]
chr5	GH05I077869	77869140	77869547	0.76	[{'connected_gene': 'GC05P077869', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 550.77}, {'connected_gene': 'LOC101929154', 'score': 0.37}, {'connected_gene': 'GC05P077817', 'score': 0.23}]
chr5	GH05I078503	78503802	78512253	1.7	[{'connected_gene': 'PIR51536', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 10.5}, {'connected_gene': 'LHFPL2', 'score': 9.34}, {'connected_gene': 'SCAMP1-AS1', 'score': 8.71}, {'connected_gene': 'SCAMP1', 'score': 7.18}, {'connected_gene': 'ARSB', 'score': 2.98}, {'connected_gene': 'AP3B1', 'score': 2.85}]
chr5	GH05I077868	77868745	77868979	0.6	[{'connected_gene': 'GC05P077869', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 550.77}, {'connected_gene': 'GC05P077817', 'score': 0.23}]
chr5	GH05I077752	77751508	77751526	0.46	[{'connected_gene': 'GC05M077749', 'score': 550.77}, {'connected_gene': 'GC05P077690', 'score': 0.21}, {'connected_gene': 'TBCA', 'score': 0.13}]
chr5	GH05I077751	77751597	77751746	0.46	[{'connected_gene': 'GC05M077749', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 13.72}, {'connected_gene': 'GC05P077690', 'score': 0.21}]
chr5	GH05I077773	77773001	77773200	0.52	[{'connected_gene': 'PIR43480', 'score': 550.77}, {'connected_gene': 'LOC105379045', 'score': 0.77}, {'connected_gene': 'GC05M077761', 'score': 0.44}, {'connected_gene': 'TBCA', 'score': 0.15}]