PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000287641	[[187386693, 187387065], [187387941, 187388187]]	[[187386852, 187387065], [187387941, 187388079]]
NM_001048	[[187386693, 187387065], [187387941, 187388201]]	[[187386852, 187387065], [187387941, 187388079]]

Promoter

Chrom	Start	End	Description
chr3	187388173	187388189	CAGE_peak_1_at_SST_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I187318	187318682	187320462	0.93	[{'connected_gene': 'SST', 'score': 11.92}, {'connected_gene': 'MASP1', 'score': 11.81}, {'connected_gene': 'RTP4', 'score': 11.3}]
chr3	GH03I187322	187322832	187324282	0.2	[{'connected_gene': 'SST', 'score': 11.0}, {'connected_gene': 'MASP1', 'score': 10.66}, {'connected_gene': 'RTP4', 'score': 10.38}]
chr3	GH03I187714	187714001	187714200	0.38	[{'connected_gene': 'SST', 'score': 10.77}, {'connected_gene': 'RTP2', 'score': 0.77}, {'connected_gene': 'LOC100131635', 'score': 0.39}, {'connected_gene': 'GC03P187680', 'score': 0.29}]
chr3	GH03I187715	187714400	187714801	1.1	[{'connected_gene': 'SST', 'score': 10.77}, {'connected_gene': 'RTP2', 'score': 0.77}, {'connected_gene': 'LOC100131635', 'score': 0.39}, {'connected_gene': 'GC03P187680', 'score': 0.29}]
chr3	GH03I187713	187713600	187713801	0.52	[{'connected_gene': 'SST', 'score': 10.77}, {'connected_gene': 'RTP2', 'score': 0.77}, {'connected_gene': 'LOC100131635', 'score': 0.39}, {'connected_gene': 'GC03P187680', 'score': 0.29}]
chr3	GH03I187670	187670382	187670441	0.79	[{'connected_gene': 'SST', 'score': 550.77}, {'connected_gene': 'GC03M187531', 'score': 0.12}]
chr3	GH03I187640	187640033	187640182	0.43	[{'connected_gene': 'SST', 'score': 11.31}, {'connected_gene': 'GC03M187531', 'score': 0.15}]
chr3	GH03I187616	187616413	187616522	0.6	[{'connected_gene': 'SST', 'score': 10.81}, {'connected_gene': 'GC03M187531', 'score': 0.18}]
chr3	GH03I187604	187604276	187604406	0.22	[{'connected_gene': 'SST', 'score': 10.62}, {'connected_gene': 'GC03M187531', 'score': 0.2}]
chr3	GH03I187641	187640333	187640482	0.57	[{'connected_gene': 'SST', 'score': 11.31}, {'connected_gene': 'GC03M187531', 'score': 0.15}]
chr3	GH03I187261	187261950	187266262	1.11	[{'connected_gene': 'MASP1', 'score': 25.41}, {'connected_gene': 'SST', 'score': 10.08}, {'connected_gene': 'LOC101929130', 'score': 0.31}, {'connected_gene': 'LOC105374260', 'score': 0.28}]
chr3	GH03I187262	187261573	187261822	0.62	[{'connected_gene': 'MASP1', 'score': 24.72}, {'connected_gene': 'SST', 'score': 10.08}, {'connected_gene': 'LOC101929130', 'score': 0.31}, {'connected_gene': 'LOC105374260', 'score': 0.28}]
chr3	GH03I187290	187290573	187294232	1.92	[{'connected_gene': 'MASP1', 'score': 559.85}, {'connected_gene': 'LOC101929130', 'score': 550.77}, {'connected_gene': 'SST', 'score': 9.83}, {'connected_gene': 'RTP4', 'score': 0.18}]
chr3	GH03I187717	187717690	187718433	0.2	[{'connected_gene': 'RTP2', 'score': 550.77}, {'connected_gene': 'LOC100131635', 'score': 12.99}, {'connected_gene': 'SST', 'score': 10.78}, {'connected_gene': 'BCL6-AS1', 'score': 0.31}, {'connected_gene': 'GC03P187680', 'score': 0.28}]
chr3	GH03I188170	188170500	188172334	1.32	[{'connected_gene': 'BCL6-AS1', 'score': 9.88}, {'connected_gene': 'BCL6', 'score': 9.88}, {'connected_gene': 'ENSG00000234238', 'score': 7.62}, {'connected_gene': 'SST', 'score': 5.35}, {'connected_gene': 'LOC100131635', 'score': 5.27}, {'connected_gene': 'FLJ42393', 'score': 0.44}, {'connected_gene': 'LPP', 'score': 0.37}, {'connected_gene': 'LPP-AS2', 'score': 0.37}]
chr3	GH03I187679	187679713	187679882	0.71	[{'connected_gene': 'GC03P187680', 'score': 550.77}, {'connected_gene': 'SST', 'score': 0.44}]
chr3	GH03I187567	187567001	187568601	0.63	[{'connected_gene': 'GC03M187531', 'score': 0.29}, {'connected_gene': 'SST', 'score': 0.15}]