PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000330315	[[138663065, 138665982]]	[[138664433, 138665564]]
NM_023067	[[138663065, 138665982]]	[[138664433, 138665564]]

Promoter

Chrom	Start	End	Description
chr3	138665669	138665685	CAGE_peak_11_at_FOXL2_5end
chr3	138665702	138665729	CAGE_peak_7_at_FOXL2_5end
chr3	138665760	138665772	CAGE_peak_3_at_FOXL2_5end
chr3	138665774	138665786	CAGE_peak_5_at_FOXL2_5end
chr3	138665790	138665809	CAGE_peak_4_at_FOXL2_5end
chr3	138665921	138665932	CAGE_peak_6_at_FOXL2_5end
chr3	138665937	138665968	CAGE_peak_1_at_FOXL2_5end
chr3	138665969	138665993	CAGE_peak_2_at_FOXL2_5end
chr3	138666029	138666038	CAGE_peak_8_at_FOXL2_5end
chr3	138666329	138666339	CAGE_peak_10_at_FOXL2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I138914	138914602	138917108	1.52	[{'connected_gene': 'CEP70', 'score': 12.25}, {'connected_gene': 'PIK3CB', 'score': 11.52}, {'connected_gene': 'FAIM', 'score': 11.23}, {'connected_gene': 'LINC01391', 'score': 11.21}, {'connected_gene': 'FOXL2NB', 'score': 11.2}, {'connected_gene': 'FOXL2', 'score': 11.2}, {'connected_gene': 'ATP5MC1P3', 'score': 0.31}]
chr3	GH03I139297	139297238	139304799	1.67	[{'connected_gene': 'FOXL2NB', 'score': 1.91}, {'connected_gene': 'FOXL2', 'score': 1.76}, {'connected_gene': 'PIR46128', 'score': 0.29}, {'connected_gene': 'ENSG00000272656', 'score': 0.25}, {'connected_gene': 'MRPS22', 'score': 0.06}]
chr3	GH03I138942	138942217	138948361	1.83	[{'connected_gene': 'FOXL2NB', 'score': 550.77}, {'connected_gene': 'LINC01391', 'score': 550.77}, {'connected_gene': 'FOXL2', 'score': 550.77}, {'connected_gene': 'DBR1', 'score': 28.08}, {'connected_gene': 'DZIP1L', 'score': 25.48}, {'connected_gene': 'ENSG00000272656', 'score': 11.16}, {'connected_gene': 'CEP70', 'score': 10.28}, {'connected_gene': 'ACTG1P1', 'score': 9.79}, {'connected_gene': 'COPB2', 'score': 9.67}, {'connected_gene': 'MRAS', 'score': 6.41}]
chr3	GH03I138923	138923539	138923801	0.95	[{'connected_gene': 'LINC01391', 'score': 11.62}, {'connected_gene': 'FOXL2NB', 'score': 11.62}, {'connected_gene': 'FOXL2', 'score': 11.62}, {'connected_gene': 'CEP70', 'score': 11.39}, {'connected_gene': 'FAIM', 'score': 10.89}, {'connected_gene': 'ATP5MC1P3', 'score': 0.29}]