PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000254193	[[101821714, 101821987], [101825171, 101825265], [101825930, 101826006], [101826418, 101826498], [101827112, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835301, 101835456]]	[[101821928, 101821987], [101825171, 101825265], [101825930, 101826006], [101826418, 101826498], [101827112, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835301, 101835383]]
ENST00000560307	[[101821718, 101821987], [101825171, 101825335]]	None
ENST00000559309	[[101821718, 101821987], [101825171, 101825265], [101825930, 101826006], [101827112, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835301, 101835409]]	[[101826000, 101826006], [101827112, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835301, 101835383]]
ENST00000558036	[[101821718, 101821987], [101825171, 101825265], [101825930, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835301, 101835487]]	None
ENST00000560433	[[101821719, 101821987], [101825171, 101825265], [101825930, 101827215], [101827860, 101828653]]	None
ENST00000394082	[[101821858, 101821987], [101825171, 101825265], [101825930, 101826006], [101827112, 101827215], [101827860, 101827907], [101835301, 101835408]]	None
ENST00000540017	[[101821913, 101821987], [101825171, 101825265], [101825930, 101826006], [101827112, 101827215], [101835301, 101835460]]	None
ENST00000560496	[[101821949, 101821987], [101825171, 101825265], [101825930, 101826006], [101826418, 101826498], [101827112, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101833497, 101833598], [101835052, 101835110]]	[[101821949, 101821987], [101825171, 101825265], [101825930, 101826006], [101826418, 101826477]]
ENST00000559686	[[101824940, 101825265], [101825930, 101826006], [101826418, 101826498], [101827112, 101827215], [101827860, 101827901]]	[[101825136, 101825265], [101825930, 101826006], [101826418, 101826498], [101827112, 101827215], [101827860, 101827901]]
ENST00000560383	[[101826814, 101827215], [101827860, 101827907], [101835301, 101835418]]	None
ENST00000558059	[[101826894, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835052, 101835135]]	None
ENST00000560987	[[101827125, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835052, 101835166]]	None
ENST00000560856	[[101827136, 101827215], [101827860, 101827907], [101830018, 101830127], [101832166, 101832245], [101833229, 101833377], [101835301, 101835427]]	None
ENST00000558020	[[101828286, 101828410], [101832166, 101832245], [101833229, 101833377], [101835301, 101835416]]	None
ENST00000561187	[[101833043, 101833377], [101835301, 101835476]]	None
NM_003090	[[101821714, 101821987], [101825171, 101825265], [101825930, 101826006], [101826418, 101826498], [101827112, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835301, 101835487]]	[[101821928, 101821987], [101825171, 101825265], [101825930, 101826006], [101826418, 101826498], [101827112, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835301, 101835383]]
NR_135508	[[101821714, 101821987], [101825171, 101825265], [101825930, 101826006], [101827112, 101827215], [101827860, 101827907], [101832166, 101832245], [101833229, 101833377], [101835301, 101835487]]	None
NR_135506	[[101821714, 101821987], [101825171, 101825265], [101825930, 101826006], [101827112, 101827215], [101827860, 101827907], [101835301, 101835487]]	None
NR_135507	[[101821714, 101821987], [101825171, 101825265], [101825930, 101826006], [101827112, 101827215], [101835301, 101835487]]	None

Promoter

Chrom	Start	End	Description
chr15	101835131	101835163	CAGE_peak_3_at_SNRPA1_5end
chr15	101835414	101835462	CAGE_peak_1_at_SNRPA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I101640	101640665	101643321	1.21	[{'connected_gene': 'TM2D3', 'score': 28.69}, {'connected_gene': 'TARSL2', 'score': 20.07}, {'connected_gene': 'LOC100128108', 'score': 14.61}, {'connected_gene': 'SNRPA1', 'score': 11.53}, {'connected_gene': 'SELENOS', 'score': 11.25}, {'connected_gene': 'RNU6-807P', 'score': 0.44}, {'connected_gene': 'LINC02348', 'score': 0.31}]
chr15	GH15I101289	101289016	101289185	0.59	[{'connected_gene': 'SNRPA1', 'score': 0.44}, {'connected_gene': 'SELENOS', 'score': 0.39}]
chr15	GH15I101293	101293015	101297693	2.33	[{'connected_gene': 'SNRPA1', 'score': 553.83}, {'connected_gene': 'ENSG00000259172', 'score': 550.77}, {'connected_gene': 'LINS1', 'score': 45.26}, {'connected_gene': 'LOC100419174', 'score': 22.82}, {'connected_gene': 'CERS3-AS1', 'score': 14.01}, {'connected_gene': 'PRKXP1', 'score': 13.86}, {'connected_gene': 'RNU6-807P', 'score': 11.63}, {'connected_gene': 'WASH3P', 'score': 10.95}, {'connected_gene': 'LRRK1', 'score': 10.56}, {'connected_gene': 'ENSG00000270127', 'score': 10.06}, {'connected_gene': 'ASB7', 'score': 10.05}, {'connected_gene': 'TARSL2', 'score': 3.75}, {'connected_gene': 'TM2D3', 'score': 2.09}, {'connected_gene': 'PCSK6', 'score': 0.07}]
chr15	GH15I101445	101445242	101447504	1.72	[{'connected_gene': 'SNRPA1', 'score': 13.5}, {'connected_gene': 'PRKXP1', 'score': 13.11}, {'connected_gene': 'TM2D3', 'score': 13.06}, {'connected_gene': 'LINS1', 'score': 12.22}, {'connected_gene': 'LOC100419174', 'score': 11.16}, {'connected_gene': 'ASB7', 'score': 9.94}, {'connected_gene': 'ENSG00000270127', 'score': 9.74}, {'connected_gene': 'WASH3P', 'score': 9.66}, {'connected_gene': 'PCSK6', 'score': 6.2}, {'connected_gene': 'CHSY1', 'score': 1.76}, {'connected_gene': 'PIR54076', 'score': 0.37}, {'connected_gene': 'LOC105371028', 'score': 0.22}]
chr15	GH15I101450	101450230	101454729	1.43	[{'connected_gene': 'SNRPA1', 'score': 10.62}, {'connected_gene': 'RNU6-807P', 'score': 10.23}, {'connected_gene': 'LINS1', 'score': 9.74}, {'connected_gene': 'PCSK6', 'score': 6.1}, {'connected_gene': 'PIR54076', 'score': 0.31}, {'connected_gene': 'LOC105371028', 'score': 0.25}]
chr15	GH15I101490	101490287	101493774	0.81	[{'connected_gene': 'SNRPA1', 'score': 17.9}, {'connected_gene': 'LOC100419174', 'score': 14.71}, {'connected_gene': 'LINS1', 'score': 14.65}, {'connected_gene': 'PRKXP1', 'score': 13.71}, {'connected_gene': 'WASH3P', 'score': 12.97}, {'connected_gene': 'ASB7', 'score': 11.14}, {'connected_gene': 'LRRK1', 'score': 10.0}, {'connected_gene': 'LOC105371028', 'score': 0.44}, {'connected_gene': 'GC15M101488', 'score': 0.34}, {'connected_gene': 'PCSK6', 'score': 0.29}, {'connected_gene': 'PIR54076', 'score': 0.21}]
chr15	GH15I100720	100720173	100728806	1.69	[{'connected_gene': 'SNRPA1', 'score': 11.73}, {'connected_gene': 'LOC100419174', 'score': 10.35}, {'connected_gene': 'SPATA41', 'score': 6.83}, {'connected_gene': 'ALDH1A3', 'score': 4.2}, {'connected_gene': 'LOC105371024', 'score': 0.44}, {'connected_gene': 'GC15M100739', 'score': 0.34}]
chr15	GH15I101275	101275966	101279175	2.3	[{'connected_gene': 'SELENOS', 'score': 550.77}, {'connected_gene': 'PIR47639', 'score': 550.77}, {'connected_gene': 'CHSY1', 'score': 11.78}, {'connected_gene': 'RNU6-807P', 'score': 10.7}, {'connected_gene': 'SNRPA1', 'score': 0.37}]
chr15	GH15I101254	101254670	101256650	1.16	[{'connected_gene': 'LINS1', 'score': 20.23}, {'connected_gene': 'CERS3-AS1', 'score': 12.4}, {'connected_gene': 'SNRPA1', 'score': 11.76}, {'connected_gene': 'LRRK1', 'score': 11.52}, {'connected_gene': 'LOC100419174', 'score': 10.54}, {'connected_gene': 'LOC100128108', 'score': 10.5}, {'connected_gene': 'ASB7', 'score': 10.06}, {'connected_gene': 'CHSY1', 'score': 0.77}, {'connected_gene': 'GC15M101273', 'score': 0.37}, {'connected_gene': 'PIR39927', 'score': 0.37}]
chr15	GH15I101448	101448371	101449077	0.2	[{'connected_gene': 'PCSK6', 'score': 12.54}, {'connected_gene': 'SNRPA1', 'score': 11.05}, {'connected_gene': 'RNU6-807P', 'score': 10.85}, {'connected_gene': 'PIR54076', 'score': 0.34}, {'connected_gene': 'LOC105371028', 'score': 0.23}]
chr15	GH15I101491	101490052	101490111	1.22	[{'connected_gene': 'PCSK6', 'score': 550.28}, {'connected_gene': 'SNRPA1', 'score': 17.9}, {'connected_gene': 'LOC100419174', 'score': 14.71}, {'connected_gene': 'LINS1', 'score': 14.65}, {'connected_gene': 'PRKXP1', 'score': 13.71}, {'connected_gene': 'WASH3P', 'score': 12.97}, {'connected_gene': 'ASB7', 'score': 11.14}, {'connected_gene': 'LRRK1', 'score': 10.0}, {'connected_gene': 'LOC105371028', 'score': 0.39}, {'connected_gene': 'GC15M101488', 'score': 0.34}, {'connected_gene': 'PIR54076', 'score': 0.21}]
chr15	GH15I101120	101120857	101129332	1.61	[{'connected_gene': 'WASH3P', 'score': 22.31}, {'connected_gene': 'CHSY1', 'score': 20.63}, {'connected_gene': 'LOC100419174', 'score': 13.28}, {'connected_gene': 'PRKXP1', 'score': 12.34}, {'connected_gene': 'ASB7', 'score': 12.11}, {'connected_gene': 'LINS1', 'score': 11.76}, {'connected_gene': 'SNRPA1', 'score': 11.72}, {'connected_gene': 'LRRK1', 'score': 5.75}, {'connected_gene': 'ENSG00000259365', 'score': 0.44}, {'connected_gene': 'LOC105371026', 'score': 0.31}]
chr15	GH15I101182	101182028	101195799	1.5	[{'connected_gene': 'CHSY1', 'score': 25.09}, {'connected_gene': 'LINS1', 'score': 16.27}, {'connected_gene': 'LOC100419174', 'score': 15.2}, {'connected_gene': 'SNRPA1', 'score': 12.55}, {'connected_gene': 'WASH3P', 'score': 12.5}, {'connected_gene': 'TM2D3', 'score': 11.45}, {'connected_gene': 'ASB7', 'score': 10.63}, {'connected_gene': 'PIR58100', 'score': 0.77}, {'connected_gene': 'GC15M101194', 'score': 0.37}]
chr15	GH15I101279	101279456	101281450	0.59	[{'connected_gene': 'CHSY1', 'score': 11.63}, {'connected_gene': 'RNU6-807P', 'score': 11.12}, {'connected_gene': 'SELENOS', 'score': 0.77}, {'connected_gene': 'SNRPA1', 'score': 0.39}]
chr15	GH15I100341	100341200	100342665	1.94	[{'connected_gene': 'ADAMTS17', 'score': 550.77}, {'connected_gene': 'SNRPA1', 'score': 12.15}, {'connected_gene': 'SPATA41', 'score': 6.72}, {'connected_gene': 'CERS3-AS1', 'score': 5.22}, {'connected_gene': 'PIR51596', 'score': 0.34}]
chr15	GH15I101745	101745200	101747201	1.33	[{'connected_gene': 'LOC100128108', 'score': 559.78}, {'connected_gene': 'PIR33824', 'score': 550.77}, {'connected_gene': 'PIR52825', 'score': 550.77}, {'connected_gene': 'SNRPA1', 'score': 32.87}, {'connected_gene': 'WASH3P', 'score': 24.15}, {'connected_gene': 'LRRK1', 'score': 19.66}, {'connected_gene': 'GC15P101730', 'score': 0.37}, {'connected_gene': 'GC15M101723', 'score': 0.25}]
chr15	GH15I101197	101197086	101211399	1.68	[{'connected_gene': 'GC15M101194', 'score': 550.77}, {'connected_gene': 'CHSY1', 'score': 27.22}, {'connected_gene': 'SNRPA1', 'score': 17.98}, {'connected_gene': 'LOC100419174', 'score': 14.72}, {'connected_gene': 'LINS1', 'score': 14.65}, {'connected_gene': 'PRKXP1', 'score': 13.72}, {'connected_gene': 'TM2D3', 'score': 13.33}, {'connected_gene': 'WASH3P', 'score': 12.95}, {'connected_gene': 'ASB7', 'score': 11.15}, {'connected_gene': 'LRRK1', 'score': 10.03}, {'connected_gene': 'PIR58100', 'score': 0.37}]