PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376503	[[99336054, 99337169], [99338443, 99338551], [99339834, 99339978], [99340501, 99340610], [99340723, 99340831], [99354733, 99354783], [99356542, 99356689], [99358387, 99358507], [99360939, 99361021], [99361825, 99361914], [99361995, 99362028], [99362120, 99362165], [99364107, 99364197], [99364751, 99364838], [99368131, 99368214], [99371490, 99371574], [99373748, 99373839], [99374057, 99374157], [99376165, 99376285], [99378376, 99378518], [99378621, 99378703], [99379096, 99379113], [99404848, 99404908]]	[[99336977, 99337169], [99338443, 99338551], [99339834, 99339978], [99340501, 99340610], [99340723, 99340831], [99354733, 99354783], [99356542, 99356689], [99358387, 99358507], [99360939, 99361021], [99361825, 99361914], [99361995, 99362028], [99362120, 99362165], [99364107, 99364197], [99364751, 99364838], [99368131, 99368214], [99371490, 99371574], [99373748, 99373839], [99374057, 99374157], [99376165, 99376285], [99378376, 99378518], [99378621, 99378703], [99379096, 99379113], [99404848, 99404852]]
ENST00000376494	[[99372780, 99373839], [99374057, 99374157], [99376165, 99376285], [99378376, 99378518], [99378621, 99378821]]	None
NM_005073	[[99336054, 99337169], [99338443, 99338551], [99339834, 99339978], [99340501, 99340610], [99340723, 99340831], [99354733, 99354783], [99356542, 99356689], [99358387, 99358507], [99360939, 99361021], [99361825, 99361914], [99361995, 99362028], [99362120, 99362165], [99364107, 99364197], [99364751, 99364838], [99368131, 99368214], [99371490, 99371574], [99373748, 99373839], [99374057, 99374157], [99376165, 99376285], [99378376, 99378518], [99378621, 99378703], [99379096, 99379113], [99404848, 99404929]]	[[99336977, 99337169], [99338443, 99338551], [99339834, 99339978], [99340501, 99340610], [99340723, 99340831], [99354733, 99354783], [99356542, 99356689], [99358387, 99358507], [99360939, 99361021], [99361825, 99361914], [99361995, 99362028], [99362120, 99362165], [99364107, 99364197], [99364751, 99364838], [99368131, 99368214], [99371490, 99371574], [99373748, 99373839], [99374057, 99374157], [99376165, 99376285], [99378376, 99378518], [99378621, 99378703], [99379096, 99379113], [99404848, 99404852]]

Promoter

Chrom	Start	End	Description
chr13	99404875	99404942	CAGE_peak_1_at_SLC15A1_5end
chr13	99404955	99404962	CAGE_peak_3_at_SLC15A1_5end
chr13	99405077	99405084	CAGE_peak_5_at_SLC15A1_5end
chr13	99405113	99405134	CAGE_peak_2_at_SLC15A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I098653	98653391	98654076	0.89	[{'connected_gene': 'STK24', 'score': 11.6}, {'connected_gene': 'STK24-AS1', 'score': 11.6}, {'connected_gene': 'SLC15A1', 'score': 5.43}, {'connected_gene': 'CALM2P4', 'score': 0.39}, {'connected_gene': 'GC13P098672', 'score': 0.37}]
chr13	GH13I098647	98647157	98652385	1.14	[{'connected_gene': 'STK24', 'score': 11.9}, {'connected_gene': 'STK24-AS1', 'score': 11.9}, {'connected_gene': 'SLC15A1', 'score': 5.96}, {'connected_gene': 'GPR183', 'score': 5.07}, {'connected_gene': 'CALM2P4', 'score': 0.44}, {'connected_gene': 'GC13P098672', 'score': 0.34}]
chr13	GH13I098722	98722392	98723962	0.46	[{'connected_gene': 'SLC15A1', 'score': 7.66}, {'connected_gene': 'RN7SL60P', 'score': 0.23}]
chr13	GH13I098688	98688487	98688636	0.31	[{'connected_gene': 'SLC15A1', 'score': 12.09}, {'connected_gene': 'RN7SL60P', 'score': 0.37}]
chr13	GH13I098771	98771191	98773655	0.72	[{'connected_gene': 'SLC15A1', 'score': 7.05}, {'connected_gene': 'LOC105370330', 'score': 0.39}, {'connected_gene': 'DOCK9-AS1', 'score': 0.22}]
chr13	GH13I098755	98755059	98756414	0.8	[{'connected_gene': 'SLC15A1', 'score': 0.77}, {'connected_gene': 'LOC105370330', 'score': 0.77}]
chr13	GH13I098730	98730370	98733994	0.66	[{'connected_gene': 'SLC15A1', 'score': 12.77}, {'connected_gene': 'DOCK9-AS1', 'score': 10.35}, {'connected_gene': 'DOCK9', 'score': 10.25}, {'connected_gene': 'RN7SL60P', 'score': 0.21}]
chr13	GH13I098729	98729050	98730145	0.2	[{'connected_gene': 'SLC15A1', 'score': 12.77}, {'connected_gene': 'DOCK9-AS1', 'score': 9.91}, {'connected_gene': 'DOCK9', 'score': 9.81}, {'connected_gene': 'RN7SL60P', 'score': 0.22}]
chr13	GH13I098775	98775489	98777367	1	[{'connected_gene': 'SLC15A1', 'score': 20.53}, {'connected_gene': 'DOCK9-AS1', 'score': 10.53}, {'connected_gene': 'DOCK9', 'score': 10.37}, {'connected_gene': 'LOC105370330', 'score': 0.37}]
chr13	GH13I098874	98874784	98876151	0.31	[{'connected_gene': 'SLC15A1', 'score': 11.66}, {'connected_gene': 'DOCK9-AS1', 'score': 10.8}, {'connected_gene': 'DOCK9', 'score': 10.62}, {'connected_gene': 'DOCK9-AS2', 'score': 8.07}, {'connected_gene': 'GC13P098878', 'score': 0.77}, {'connected_gene': 'ENSG00000275919', 'score': 0.77}]
chr13	GH13I098737	98737523	98753194	1.95	[{'connected_gene': 'SLC15A1', 'score': 561.48}, {'connected_gene': 'STK24-AS1', 'score': 14.04}, {'connected_gene': 'DOCK9-AS2', 'score': 5.56}, {'connected_gene': 'RN7SL60P', 'score': 0.19}]
chr13	GH13I098784	98784046	98785955	0.79	[{'connected_gene': 'SLC15A1', 'score': 7.66}, {'connected_gene': 'DOCK9-AS2', 'score': 5.15}, {'connected_gene': 'LOC105370330', 'score': 0.31}, {'connected_gene': 'DOCK9-AS1', 'score': 0.25}]
chr13	GH13I098812	98812985	98815598	0.89	[{'connected_gene': 'SLC15A1', 'score': 10.88}, {'connected_gene': 'DOCK9-AS2', 'score': 7.77}, {'connected_gene': 'DOCK9-AS1', 'score': 0.37}, {'connected_gene': 'LOC105370330', 'score': 0.22}, {'connected_gene': 'DOCK9', 'score': 0.06}]
chr13	GH13I098908	98908343	98911570	1.23	[{'connected_gene': 'DOCK9', 'score': 18.9}, {'connected_gene': 'SLC15A1', 'score': 8.69}, {'connected_gene': 'GPR183', 'score': 2.82}, {'connected_gene': 'STK24', 'score': 1.26}, {'connected_gene': 'GC13M098916', 'score': 0.44}, {'connected_gene': 'GC13P098878', 'score': 0.29}]
chr13	GH13I098929	98929362	98931132	0.78	[{'connected_gene': 'DOCK9', 'score': 23.28}, {'connected_gene': 'DOCK9-AS1', 'score': 10.48}, {'connected_gene': 'SLC15A1', 'score': 4.96}, {'connected_gene': 'GC13M098916', 'score': 0.39}, {'connected_gene': 'RPL7L1P12', 'score': 0.34}]
chr13	GH13I098889	98889731	98891339	0.69	[{'connected_gene': 'DOCK9', 'score': 16.91}, {'connected_gene': 'RNU6-83P', 'score': 11.51}, {'connected_gene': 'DOCK9-AS2', 'score': 10.56}, {'connected_gene': 'DOCK9-AS1', 'score': 10.43}, {'connected_gene': 'SLC15A1', 'score': 8.02}, {'connected_gene': 'GC13P098878', 'score': 0.39}, {'connected_gene': 'GC13M098916', 'score': 0.31}]
chr13	GH13I098938	98938847	98941175	0.78	[{'connected_gene': 'DOCK9', 'score': 12.53}, {'connected_gene': 'DOCK9-AS2', 'score': 10.54}, {'connected_gene': 'SLC15A1', 'score': 5.42}, {'connected_gene': 'RPL7L1P12', 'score': 0.39}, {'connected_gene': 'GC13M098916', 'score': 0.34}]
chr13	GH13I098913	98913609	98914863	0.2	[{'connected_gene': 'DOCK9', 'score': 10.27}, {'connected_gene': 'DOCK9-AS2', 'score': 9.81}, {'connected_gene': 'SLC15A1', 'score': 9.48}, {'connected_gene': 'GC13M098916', 'score': 0.77}, {'connected_gene': 'GC13P098878', 'score': 0.28}]
chr13	GH13I098765	98765372	98768190	0.4	[{'connected_gene': 'DOCK9-AS1', 'score': 10.38}, {'connected_gene': 'DOCK9', 'score': 10.23}, {'connected_gene': 'SLC15A1', 'score': 6.12}, {'connected_gene': 'LOC105370330', 'score': 0.44}]
chr13	GH13I098856	98856170	98858557	0.43	[{'connected_gene': 'DOCK9-AS1', 'score': 11.63}, {'connected_gene': 'DOCK9', 'score': 11.39}, {'connected_gene': 'SLC15A1', 'score': 9.07}, {'connected_gene': 'DOCK9-AS2', 'score': 8.59}, {'connected_gene': 'ENSG00000275919', 'score': 0.39}]
chr13	GH13I098800	98800872	98805071	0.72	[{'connected_gene': 'DOCK9-AS1', 'score': 11.34}, {'connected_gene': 'DOCK9', 'score': 11.09}, {'connected_gene': 'DOCK9-AS2', 'score': 6.92}, {'connected_gene': 'SLC15A1', 'score': 6.22}, {'connected_gene': 'LOC105370330', 'score': 0.26}]
chr13	GH13I098915	98915632	98916875	0.2	[{'connected_gene': 'DOCK9-AS2', 'score': 9.81}, {'connected_gene': 'SLC15A1', 'score': 9.52}, {'connected_gene': 'GC13M098916', 'score': 0.77}, {'connected_gene': 'GC13P098878', 'score': 0.28}, {'connected_gene': 'DOCK9', 'score': 0.09}]
chr13	GH13I098819	98819139	98823764	1.12	[{'connected_gene': 'DOCK9-AS2', 'score': 6.8}, {'connected_gene': 'SLC15A1', 'score': 5.28}, {'connected_gene': 'DOCK9-AS1', 'score': 0.39}, {'connected_gene': 'LOC105370330', 'score': 0.21}, {'connected_gene': 'DOCK9', 'score': 0.06}]
chr13	GH13I098916	98916902	98918171	0.2	[{'connected_gene': 'GC13M098916', 'score': 550.77}, {'connected_gene': 'SLC15A1', 'score': 9.58}, {'connected_gene': 'DOCK9-AS2', 'score': 9.56}, {'connected_gene': 'GC13P098878', 'score': 0.28}, {'connected_gene': 'DOCK9', 'score': 0.09}]
chr13	GH13I098878	98878305	98880636	0.58	[{'connected_gene': 'GC13P098878', 'score': 550.77}, {'connected_gene': 'DOCK9', 'score': 18.3}, {'connected_gene': 'DOCK9-AS1', 'score': 11.13}, {'connected_gene': 'DOCK9-AS2', 'score': 7.74}, {'connected_gene': 'SLC15A1', 'score': 7.68}, {'connected_gene': 'GC13M098916', 'score': 0.28}]
chr13	GH13I098672	98672770	98674188	1	[{'connected_gene': 'GC13P098672', 'score': 550.77}, {'connected_gene': 'RN7SL60P', 'score': 550.77}, {'connected_gene': 'STK24', 'score': 10.38}, {'connected_gene': 'STK24-AS1', 'score': 10.38}, {'connected_gene': 'SLC15A1', 'score': 6.76}]