PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000340353	[[86748885, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87034800]]	[[86749087, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87032375]]
ENST00000532959	[[86748991, 86749133], [86868382, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87032401]]	[[86749124, 86749133], [86868382, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87032375]]
ENST00000305494	[[86749048, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86868382, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87033392]]	[[86749087, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86868382, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87032375]]
ENST00000535167	[[86749081, 86749228], [86778735, 86778863], [86782564, 86782657], [86868382, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87032528]]	[[86868403, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87032375]]
ENST00000531643	[[87029176, 87029277], [87030351, 87030419], [87032242, 87033392]]	None
ENST00000528861	[[87030108, 87030419], [87032242, 87033077]]	None
ENST00000529023	[[86748933, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86868382, 86868927]]	None
ENST00000526733	[[86748962, 86749228], [86778735, 86778863], [86802403, 86802437], [86868382, 86868450]]	[[86749087, 86749228], [86778735, 86778863], [86802403, 86802437], [86868382, 86868450]]
ENST00000355734	[[86749026, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86889498, 86890366]]	[[86749087, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86889498, 86889585]]
ENST00000525018	[[86749026, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86988194, 86988490]]	[[86749087, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86988194, 86988490]]
ENST00000531800	[[86782558, 86782657], [86802403, 86802437], [86868382, 86868450]]	None
NR_033149	[[86748885, 86749228], [86778735, 86778863], [86782564, 86782657], [86868382, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87039876]]	None
NM_001168724	[[86748885, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87039876]]	[[86749087, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87032375]]
NM_022918	[[86748885, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86868382, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87039876]]	[[86749087, 86749228], [86778735, 86778863], [86782564, 86782657], [86802403, 86802437], [86868382, 86868448], [86947679, 86947726], [87006823, 87006865], [87013337, 87013484], [87016977, 87017047], [87020546, 87020714], [87024466, 87024530], [87025512, 87025589], [87029178, 87029277], [87030351, 87030419], [87032242, 87032375]]

Promoter

Chrom	Start	End	Description
chr11	86748863	86748948	CAGE_peak_3_at_TMEM135_5end
chr11	86748957	86748996	CAGE_peak_2_at_TMEM135_5end
chr11	86748998	86749020	CAGE_peak_4_at_TMEM135_5end
chr11	86749035	86749087	CAGE_peak_1_at_TMEM135_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I087081	87081226	87082053	0.54	[{'connected_gene': 'EED', 'score': 9.81}, {'connected_gene': 'TMEM135', 'score': 5.17}, {'connected_gene': 'XIAPP2', 'score': 0.39}]
chr11	GH11I087254	87254306	87255230	0.31	[{'connected_gene': 'FZD4', 'score': 8.95}, {'connected_gene': 'GC11M087259', 'score': 0.77}, {'connected_gene': 'GC11P087232', 'score': 0.34}, {'connected_gene': 'TMEM135', 'score': 0.08}]
chr11	GH11I086920	86920565	86920923	0.44	[{'connected_gene': 'FZD4', 'score': 3.07}, {'connected_gene': 'ME3', 'score': 1.6}, {'connected_gene': 'TMEM135', 'score': 1.29}, {'connected_gene': 'ENSG00000255471', 'score': 0.77}, {'connected_gene': 'ENSG00000280339', 'score': 0.44}, {'connected_gene': 'PRSS23', 'score': 0.13}]
chr11	GH11I087028	87028400	87029777	0.84	[{'connected_gene': 'TMEM135', 'score': 4.97}, {'connected_gene': 'ME3', 'score': 4.24}, {'connected_gene': 'HNRNPCP8', 'score': 0.77}, {'connected_gene': 'LOC105369422', 'score': 0.44}]
chr11	GH11I087036	87036397	87039463	2.06	[{'connected_gene': 'TMEM135', 'score': 555.8}, {'connected_gene': 'LOC105369422', 'score': 550.77}, {'connected_gene': 'XIAPP2', 'score': 0.22}]
chr11	GH11I087037	87036079	87036228	0.66	[{'connected_gene': 'TMEM135', 'score': 550.77}, {'connected_gene': 'LOC105369422', 'score': 550.77}, {'connected_gene': 'HNRNPCP8', 'score': 0.39}]
chr11	GH11I087030	87030601	87031000	0.99	[{'connected_gene': 'TMEM135', 'score': 4.94}, {'connected_gene': 'HNRNPCP8', 'score': 0.44}, {'connected_gene': 'LOC105369422', 'score': 0.44}]
chr11	GH11I086937	86937841	86943328	1.39	[{'connected_gene': 'CCDC81', 'score': 7.26}, {'connected_gene': 'LOC100506368', 'score': 6.01}, {'connected_gene': 'ENSG00000255471', 'score': 5.54}, {'connected_gene': 'TMEM135', 'score': 5.3}, {'connected_gene': 'FZD4', 'score': 0.39}, {'connected_gene': 'PRSS23', 'score': 0.11}]
chr11	GH11I087284	87284419	87284568	0.2	[{'connected_gene': 'LOC101929104', 'score': 0.31}, {'connected_gene': 'LOC100420680', 'score': 0.28}, {'connected_gene': 'TMEM135', 'score': 0.07}]
chr11	GH11I087290	87290439	87290548	0.62	[{'connected_gene': 'LOC100420680', 'score': 0.29}, {'connected_gene': 'LOC101929104', 'score': 0.29}, {'connected_gene': 'TMEM135', 'score': 0.07}]
chr11	GH11I087300	87300739	87300888	0.43	[{'connected_gene': 'LOC100420680', 'score': 0.34}, {'connected_gene': 'LOC101929104', 'score': 0.26}, {'connected_gene': 'TMEM135', 'score': 0.07}]
chr11	GH11I087291	87291340	87292183	0.46	[{'connected_gene': 'LOC100420680', 'score': 0.29}, {'connected_gene': 'LOC101929104', 'score': 0.29}, {'connected_gene': 'TMEM135', 'score': 0.07}]
chr11	GH11I087301	87301059	87301208	0.54	[{'connected_gene': 'LOC100420680', 'score': 0.34}, {'connected_gene': 'LOC101929104', 'score': 0.26}, {'connected_gene': 'TMEM135', 'score': 0.07}]
chr11	GH11I087281	87281180	87282280	0.85	[{'connected_gene': 'ENSG00000255471', 'score': 10.6}, {'connected_gene': 'FZD4', 'score': 9.64}, {'connected_gene': 'LOC101929104', 'score': 0.34}, {'connected_gene': 'LOC100420680', 'score': 0.26}, {'connected_gene': 'TMEM135', 'score': 0.07}]
chr11	GH11I087019	87019242	87021102	0.31	[{'connected_gene': 'GC11M086989', 'score': 550.77}, {'connected_gene': 'TMEM135', 'score': 4.86}, {'connected_gene': 'LOC105369422', 'score': 0.37}, {'connected_gene': 'GC11P086992', 'score': 0.31}]
chr11	GH11I087148	87148239	87148388	0.2	[{'connected_gene': 'GC11P087140', 'score': 0.44}, {'connected_gene': 'GC11P087232', 'score': 0.18}, {'connected_gene': 'TMEM135', 'score': 0.14}]
chr11	GH11I087173	87173069	87174295	1	[{'connected_gene': 'GC11P087140', 'score': 0.29}, {'connected_gene': 'GC11P087232', 'score': 0.22}, {'connected_gene': 'TMEM135', 'score': 0.12}]
chr11	GH11I087130	87130117	87130181	0.25	[{'connected_gene': 'GC11P087126', 'score': 0.77}, {'connected_gene': 'GC11P087140', 'score': 0.39}, {'connected_gene': 'TMEM135', 'score': 0.16}]
chr11	GH11I087097	87097387	87098565	1.06	[{'connected_gene': 'GC11M087089', 'score': 550.77}, {'connected_gene': 'XIAPP2', 'score': 550.77}, {'connected_gene': 'ENSG00000279836', 'score': 0.34}, {'connected_gene': 'TMEM135', 'score': 0.21}]