PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264703	[[27714749, 27715345], [27715532, 27715657], [27716255, 27716345], [27716796, 27717001], [27717217, 27717333], [27717413, 27717570], [27717744, 27718112]]	[[27715309, 27715345], [27715532, 27715657], [27716255, 27716345], [27716796, 27717001], [27717217, 27717333], [27717413, 27717546]]
ENST00000491414	[[27714767, 27715345], [27716255, 27716345], [27716796, 27717333], [27717413, 27717570], [27717744, 27718029]]	None
ENST00000476197	[[27715579, 27715657], [27716255, 27716345], [27716796, 27717001], [27717217, 27717333], [27717413, 27717679]]	None
NM_022823	[[27714749, 27715345], [27715532, 27715657], [27716255, 27716345], [27716796, 27717001], [27717217, 27717333], [27717413, 27717570], [27717744, 27718126]]	[[27715309, 27715345], [27715532, 27715657], [27716255, 27716345], [27716796, 27717001], [27717217, 27717333], [27717413, 27717546]]

Promoter

Chrom	Start	End	Description
chr2	27717659	27717670	CAGE_peak_4_at_FNDC4_5end
chr2	27718052	27718127	CAGE_peak_1_at_FNDC4_5end
chr2	27718134	27718144	CAGE_peak_2_at_FNDC4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I027794	27794940	27801566	1.64	[{'connected_gene': 'MRPL33', 'score': 15.8}, {'connected_gene': 'FNDC4', 'score': 11.05}, {'connected_gene': 'PLB1', 'score': 10.9}, {'connected_gene': 'LOC102723530', 'score': 10.9}, {'connected_gene': 'SNRPGP7', 'score': 10.9}, {'connected_gene': 'SNX17', 'score': 8.65}, {'connected_gene': 'RBKS', 'score': 5.9}, {'connected_gene': 'ATRAID', 'score': 4.25}, {'connected_gene': 'GC02P027841', 'score': 0.26}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027770	27770865	27774256	2.28	[{'connected_gene': 'MRPL33', 'score': 550.77}, {'connected_gene': 'FNDC4', 'score': 9.32}, {'connected_gene': 'GC02P027841', 'score': 0.2}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027734	27734974	27739232	1.62	[{'connected_gene': 'MRPL33', 'score': 11.95}, {'connected_gene': 'LINC01460', 'score': 11.85}, {'connected_gene': 'LOC102723530', 'score': 11.66}, {'connected_gene': 'SNRPGP7', 'score': 11.65}, {'connected_gene': 'PLB1', 'score': 11.65}, {'connected_gene': 'FLJ31356', 'score': 11.36}, {'connected_gene': 'FOSL2', 'score': 11.36}, {'connected_gene': 'FNDC4', 'score': 7.74}, {'connected_gene': 'RBKS', 'score': 2.14}, {'connected_gene': 'LOC105374378', 'score': 0.34}, {'connected_gene': 'GC02M027478', 'score': 0.04}]
chr2	GH02I027595	27595583	27595642	0.73	[{'connected_gene': 'ZNF512', 'score': 550.39}, {'connected_gene': 'CCDC121', 'score': 10.62}, {'connected_gene': 'GPN1', 'score': 10.62}, {'connected_gene': 'GCKR', 'score': 10.2}, {'connected_gene': 'FNDC4', 'score': 10.19}, {'connected_gene': 'IFT172', 'score': 9.87}, {'connected_gene': 'ENSG00000259080', 'score': 0.39}, {'connected_gene': 'GC02M027478', 'score': 0.03}]
chr2	GH02I027703	27703314	27707399	1.39	[{'connected_gene': 'CCDC121', 'score': 10.04}, {'connected_gene': 'GPN1', 'score': 10.04}, {'connected_gene': 'FNDC4', 'score': 6.45}, {'connected_gene': 'OST4', 'score': 4.24}, {'connected_gene': 'LINC01460', 'score': 0.39}, {'connected_gene': 'LOC105374378', 'score': 0.39}, {'connected_gene': 'SUPT7L', 'score': 0.26}, {'connected_gene': 'GC02M027478', 'score': 0.04}]
chr2	GH02I027778	27778677	27780993	0.83	[{'connected_gene': 'FNDC4', 'score': 9.04}, {'connected_gene': 'SNX17', 'score': 6.41}, {'connected_gene': 'MRPL33', 'score': 0.44}, {'connected_gene': 'GC02P027841', 'score': 0.21}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027493	27493295	27495684	1.84	[{'connected_gene': 'FNDC4', 'score': 550.77}, {'connected_gene': 'SNX17', 'score': 39.38}, {'connected_gene': 'ENSG00000270210', 'score': 4.66}, {'connected_gene': 'IFT172', 'score': 0.77}, {'connected_gene': 'GC02M027478', 'score': 0.03}]
chr2	GH02I027929	27929059	27933392	0.72	[{'connected_gene': 'FNDC4', 'score': 6.12}, {'connected_gene': 'SNX17', 'score': 5.96}, {'connected_gene': 'LOC105374369', 'score': 0.39}, {'connected_gene': 'LOC100420770', 'score': 0.29}, {'connected_gene': 'BABAM2', 'score': 0.26}, {'connected_gene': 'MRPL33', 'score': 0.1}, {'connected_gene': 'GC02M027478', 'score': 0.07}]
chr2	GH02I027726	27726995	27731561	1.19	[{'connected_gene': 'FNDC4', 'score': 6.13}, {'connected_gene': 'SNX17', 'score': 5.67}, {'connected_gene': 'LINC01460', 'score': 0.39}, {'connected_gene': 'LOC105374378', 'score': 0.39}, {'connected_gene': 'MRPL33', 'score': 0.26}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027808	27808470	27811381	0.99	[{'connected_gene': 'FNDC4', 'score': 10.9}, {'connected_gene': 'GC02P027841', 'score': 0.29}, {'connected_gene': 'MRPL33', 'score': 0.28}, {'connected_gene': 'RBKS', 'score': 0.18}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027761	27761050	27764213	1.1	[{'connected_gene': 'FNDC4', 'score': 7.99}, {'connected_gene': 'MRPL33', 'score': 0.44}, {'connected_gene': 'LINC01460', 'score': 0.25}, {'connected_gene': 'LOC105374378', 'score': 0.25}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027776	27776945	27777415	0.2	[{'connected_gene': 'FNDC4', 'score': 8.05}, {'connected_gene': 'MRPL33', 'score': 0.44}, {'connected_gene': 'GC02P027841', 'score': 0.21}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027831	27831220	27833253	0.69	[{'connected_gene': 'FNDC4', 'score': 9.13}, {'connected_gene': 'GC02P027841', 'score': 0.44}, {'connected_gene': 'RBKS', 'score': 0.22}, {'connected_gene': 'MRPL33', 'score': 0.21}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027751	27751237	27754799	1.39	[{'connected_gene': 'FNDC4', 'score': 8.23}, {'connected_gene': 'TRIM54', 'score': 4.3}, {'connected_gene': 'MRPL33', 'score': 0.37}, {'connected_gene': 'LINC01460', 'score': 0.28}, {'connected_gene': 'LOC105374378', 'score': 0.28}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027855	27855113	27858339	0.62	[{'connected_gene': 'FNDC4', 'score': 10.44}, {'connected_gene': 'KHK', 'score': 4.29}, {'connected_gene': 'GC02P027841', 'score': 0.39}, {'connected_gene': 'RBKS', 'score': 0.29}, {'connected_gene': 'BABAM2', 'score': 0.29}, {'connected_gene': 'MRPL33', 'score': 0.17}, {'connected_gene': 'GC02M027478', 'score': 0.06}]
chr2	GH02I027565	27565718	27568047	0.31	[{'connected_gene': 'FNDC4', 'score': 18.14}, {'connected_gene': 'IFT172', 'score': 10.61}, {'connected_gene': 'GCKR', 'score': 10.6}, {'connected_gene': 'CCDC121', 'score': 10.54}, {'connected_gene': 'GPN1', 'score': 10.54}, {'connected_gene': 'KRTCAP3', 'score': 10.31}, {'connected_gene': 'NRBP1', 'score': 10.3}, {'connected_gene': 'RNU6-986P', 'score': 9.39}, {'connected_gene': 'CGREF1', 'score': 4.14}, {'connected_gene': 'LOC100420668', 'score': 0.77}, {'connected_gene': 'C2orf16', 'score': 0.31}, {'connected_gene': 'GC02M027478', 'score': 0.03}]
chr2	GH02I027461	27461234	27461383	0.59	[{'connected_gene': 'FNDC4', 'score': 10.82}, {'connected_gene': 'GCKR', 'score': 10.8}, {'connected_gene': 'IFT172', 'score': 10.63}, {'connected_gene': 'SUPT7L', 'score': 9.75}, {'connected_gene': 'SLC4A1AP', 'score': 9.75}, {'connected_gene': 'ENSG00000235267', 'score': 0.44}, {'connected_gene': 'GC02M027477', 'score': 0.39}, {'connected_gene': 'RNU6-986P', 'score': 0.39}]
chr2	GH02I027765	27765336	27766878	1.15	[{'connected_gene': 'FNDC4', 'score': 9.73}, {'connected_gene': 'LOC105374363', 'score': 4.57}, {'connected_gene': 'MRPL33', 'score': 0.44}, {'connected_gene': 'LINC01460', 'score': 0.25}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027988	27988309	27990563	0.76	[{'connected_gene': 'FNDC4', 'score': 9.12}, {'connected_gene': 'LOC105374363', 'score': 4.23}, {'connected_gene': 'GC02M027983', 'score': 0.77}, {'connected_gene': 'MIR4263', 'score': 0.44}, {'connected_gene': 'BABAM2', 'score': 0.15}, {'connected_gene': 'GC02M027478', 'score': 0.1}]
chr2	GH02I027965	27965736	27966383	0.58	[{'connected_gene': 'FNDC4', 'score': 9.14}, {'connected_gene': 'GC02M027983', 'score': 0.37}, {'connected_gene': 'LOC100422227', 'score': 0.37}, {'connected_gene': 'BABAM2', 'score': 0.18}, {'connected_gene': 'MRPL33', 'score': 0.08}, {'connected_gene': 'GC02M027478', 'score': 0.08}]
chr2	GH02I027972	27972936	27975089	0.31	[{'connected_gene': 'FNDC4', 'score': 6.06}, {'connected_gene': 'GC02M027983', 'score': 0.39}, {'connected_gene': 'LOC100422227', 'score': 0.34}, {'connected_gene': 'BABAM2', 'score': 0.18}, {'connected_gene': 'GC02M027478', 'score': 0.08}, {'connected_gene': 'MRPL33', 'score': 0.08}]
chr2	GH02I027727	27726200	27726665	0.2	[{'connected_gene': 'FNDC4', 'score': 6.17}, {'connected_gene': 'LINC01460', 'score': 0.44}, {'connected_gene': 'LOC105374378', 'score': 0.39}, {'connected_gene': 'MRPL33', 'score': 0.25}, {'connected_gene': 'GC02M027478', 'score': 0.04}]
chr2	GH02I027707	27707439	27711429	0.69	[{'connected_gene': 'FNDC4', 'score': 7.0}, {'connected_gene': 'OST4', 'score': 4.24}, {'connected_gene': 'LINC01460', 'score': 0.44}, {'connected_gene': 'LOC105374378', 'score': 0.44}, {'connected_gene': 'SUPT7L', 'score': 0.25}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027884	27884926	27892403	2.5	[{'connected_gene': 'RBKS', 'score': 550.77}, {'connected_gene': 'BABAM2', 'score': 550.77}, {'connected_gene': 'TRMT61B', 'score': 10.11}, {'connected_gene': 'KRTCAP3', 'score': 5.24}, {'connected_gene': 'FNDC4', 'score': 5.23}, {'connected_gene': 'SLC4A1AP', 'score': 4.45}, {'connected_gene': 'BRE-AS1', 'score': 0.77}, {'connected_gene': 'GC02P027841', 'score': 0.25}, {'connected_gene': 'MRPL33', 'score': 0.13}, {'connected_gene': 'GC02M027478', 'score': 0.06}]
chr2	GH02I027427	27427416	27432200	2.06	[{'connected_gene': 'NRBP1', 'score': 550.77}, {'connected_gene': 'GC02M027429', 'score': 550.77}, {'connected_gene': 'SNX17', 'score': 49.98}, {'connected_gene': 'ZNF513', 'score': 10.83}, {'connected_gene': 'GCKR', 'score': 10.59}, {'connected_gene': 'FNDC4', 'score': 10.59}, {'connected_gene': 'IFT172', 'score': 10.45}, {'connected_gene': 'RNU6-986P', 'score': 10.32}, {'connected_gene': 'CCDC121', 'score': 10.04}, {'connected_gene': 'GPN1', 'score': 10.04}]
chr2	GH02I027915	27915889	27917479	0.84	[{'connected_gene': 'GTF3C2', 'score': 20.49}, {'connected_gene': 'CAD', 'score': 15.61}, {'connected_gene': 'SNX17', 'score': 14.36}, {'connected_gene': 'LOC105374363', 'score': 14.34}, {'connected_gene': 'NRBP1', 'score': 13.61}, {'connected_gene': 'TMEM214', 'score': 13.02}, {'connected_gene': 'GPN1', 'score': 12.46}, {'connected_gene': 'EIF2B4', 'score': 12.04}, {'connected_gene': 'GTF3C2-AS1', 'score': 10.64}, {'connected_gene': 'WDR43', 'score': 9.8}, {'connected_gene': 'FNDC4', 'score': 5.26}, {'connected_gene': 'LOC100420770', 'score': 0.37}, {'connected_gene': 'LOC105374369', 'score': 0.31}, {'connected_gene': 'BABAM2', 'score': 0.31}, {'connected_gene': 'MRPL33', 'score': 0.11}, {'connected_gene': 'GC02M027478', 'score': 0.07}]
chr2	GH02I027901	27901225	27901607	0.46	[{'connected_gene': 'FOSL2', 'score': 15.97}, {'connected_gene': 'FNDC4', 'score': 9.18}, {'connected_gene': 'RBKS', 'score': 6.73}, {'connected_gene': 'LOC100420770', 'score': 0.77}, {'connected_gene': 'BABAM2', 'score': 0.39}, {'connected_gene': 'LOC105374369', 'score': 0.26}, {'connected_gene': 'MRPL33', 'score': 0.13}, {'connected_gene': 'GC02M027478', 'score': 0.06}]
chr2	GH02I027919	27919683	27923043	1.2	[{'connected_gene': 'FOSL2', 'score': 19.79}, {'connected_gene': 'RBKS', 'score': 11.01}, {'connected_gene': 'SNX17', 'score': 7.37}, {'connected_gene': 'FNDC4', 'score': 6.12}, {'connected_gene': 'BABAM2', 'score': 2.31}, {'connected_gene': 'LOC100420770', 'score': 0.34}, {'connected_gene': 'LOC105374369', 'score': 0.34}, {'connected_gene': 'MRPL33', 'score': 0.11}, {'connected_gene': 'GC02M027478', 'score': 0.07}]
chr2	GH02I027953	27953002	27961463	1.59	[{'connected_gene': 'FOSL2', 'score': 32.84}, {'connected_gene': 'RBKS', 'score': 12.19}, {'connected_gene': 'FLJ31356', 'score': 11.37}, {'connected_gene': 'FNDC4', 'score': 9.12}, {'connected_gene': 'C2orf16', 'score': 5.89}, {'connected_gene': 'CGREF1', 'score': 4.07}, {'connected_gene': 'LINC01460', 'score': 4.0}, {'connected_gene': 'BABAM2', 'score': 1.36}, {'connected_gene': 'GCKR', 'score': 1.14}, {'connected_gene': 'LOC100422227', 'score': 0.44}, {'connected_gene': 'GC02M027983', 'score': 0.31}, {'connected_gene': 'MRPL33', 'score': 0.09}, {'connected_gene': 'GC02M027478', 'score': 0.08}]
chr2	GH02I027626	27626253	27630048	2.26	[{'connected_gene': 'GPN1', 'score': 572.56}, {'connected_gene': 'CCDC121', 'score': 550.77}, {'connected_gene': 'SNX17', 'score': 25.28}, {'connected_gene': 'CAD', 'score': 18.86}, {'connected_gene': 'GTF3C2', 'score': 17.42}, {'connected_gene': 'GTF3C2-AS1', 'score': 14.62}, {'connected_gene': 'NRBP1', 'score': 14.46}, {'connected_gene': 'EIF2B4', 'score': 14.37}, {'connected_gene': 'ZNF513', 'score': 12.84}, {'connected_gene': 'PPM1G', 'score': 11.81}, {'connected_gene': 'LOC105374363', 'score': 11.25}, {'connected_gene': 'TMEM214', 'score': 9.7}, {'connected_gene': 'FNDC4', 'score': 6.11}, {'connected_gene': 'MAPRE3', 'score': 4.15}, {'connected_gene': 'ENSG00000259080', 'score': 0.25}, {'connected_gene': 'GC02M027478', 'score': 0.03}]
chr2	GH02I027496	27496457	27497417	1.41	[{'connected_gene': 'GCKR', 'score': 550.77}, {'connected_gene': 'FNDC4', 'score': 550.77}, {'connected_gene': 'GC02P027503', 'score': 0.44}, {'connected_gene': 'GC02M027478', 'score': 0.03}]
chr2	GH02I027711	27711593	27713765	0.43	[{'connected_gene': 'LOC102723530', 'score': 9.93}, {'connected_gene': 'SNRPGP7', 'score': 9.93}, {'connected_gene': 'PLB1', 'score': 9.93}, {'connected_gene': 'FLJ31356', 'score': 9.88}, {'connected_gene': 'FOSL2', 'score': 9.88}, {'connected_gene': 'SNX17', 'score': 9.16}, {'connected_gene': 'CCDC121', 'score': 9.09}, {'connected_gene': 'GPN1', 'score': 9.09}, {'connected_gene': 'ZNF512', 'score': 9.04}, {'connected_gene': 'RNU6-986P', 'score': 8.57}, {'connected_gene': 'FNDC4', 'score': 7.33}, {'connected_gene': 'LINC01460', 'score': 0.77}, {'connected_gene': 'LOC105374378', 'score': 0.77}, {'connected_gene': 'SUPT7L', 'score': 0.25}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027801	27801946	27802023	0.49	[{'connected_gene': 'SNRPGP7', 'score': 10.9}, {'connected_gene': 'PLB1', 'score': 10.9}, {'connected_gene': 'LOC102723530', 'score': 10.9}, {'connected_gene': 'FNDC4', 'score': 9.89}, {'connected_gene': 'MRPL33', 'score': 5.9}, {'connected_gene': 'CCDC121', 'score': 2.87}, {'connected_gene': 'IFT172', 'score': 2.6}, {'connected_gene': 'ZNF512', 'score': 1.86}, {'connected_gene': 'SLC4A1AP', 'score': 1.85}, {'connected_gene': 'SUPT7L', 'score': 1.64}, {'connected_gene': 'GPN1', 'score': 1.23}, {'connected_gene': 'GC02P027841', 'score': 0.28}, {'connected_gene': 'RBKS', 'score': 0.17}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027950	27950301	27951416	0.38	[{'connected_gene': 'LOC100422227', 'score': 550.77}, {'connected_gene': 'FNDC4', 'score': 4.16}, {'connected_gene': 'GC02M027983', 'score': 0.29}, {'connected_gene': 'BABAM2', 'score': 0.21}, {'connected_gene': 'MRPL33', 'score': 0.1}, {'connected_gene': 'GC02M027478', 'score': 0.08}]
chr2	GH02I027714	27714523	27717823	1.79	[{'connected_gene': 'LINC01460', 'score': 550.77}, {'connected_gene': 'LOC105374378', 'score': 550.77}, {'connected_gene': 'SNX17', 'score': 12.22}, {'connected_gene': 'FNDC4', 'score': 8.47}, {'connected_gene': 'KRTCAP3', 'score': 6.99}, {'connected_gene': 'OST4', 'score': 5.32}, {'connected_gene': 'TRIM54', 'score': 3.73}, {'connected_gene': 'GC02M027478', 'score': 0.05}]
chr2	GH02I027574	27573574	27573723	0.31	[{'connected_gene': 'PIR34412', 'score': 550.77}, {'connected_gene': 'SNX17', 'score': 13.6}, {'connected_gene': 'IFT172', 'score': 10.2}, {'connected_gene': 'GCKR', 'score': 9.7}, {'connected_gene': 'FNDC4', 'score': 9.7}, {'connected_gene': 'ENSG00000206731', 'score': 9.38}, {'connected_gene': 'LOC100420668', 'score': 0.77}, {'connected_gene': 'C2orf16', 'score': 0.28}, {'connected_gene': 'GC02M027478', 'score': 0.03}]
chr2	GH02I027573	27573214	27573363	0.31	[{'connected_gene': 'PIR34412', 'score': 550.77}, {'connected_gene': 'IFT172', 'score': 10.2}, {'connected_gene': 'GCKR', 'score': 9.7}, {'connected_gene': 'FNDC4', 'score': 9.7}, {'connected_gene': 'ENSG00000206731', 'score': 9.38}, {'connected_gene': 'GPN1', 'score': 4.79}, {'connected_gene': 'LOC100420668', 'score': 0.77}, {'connected_gene': 'C2orf16', 'score': 0.28}, {'connected_gene': 'GC02M027478', 'score': 0.03}]