PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000251473	[[11466061, 11466248], [11467477, 11467652], [11468335, 11468415], [11470207, 11470396], [11470496, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474495], [11474836, 11474888], [11475022, 11476374]]	[[11468349, 11468415], [11470207, 11470396], [11470496, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474495], [11474836, 11474888], [11475022, 11475055]]
ENST00000591329	[[11466099, 11466248], [11467477, 11467652], [11468294, 11468415], [11470207, 11470395]]	[[11468349, 11468415], [11470207, 11470395]]
ENST00000586431	[[11466106, 11466248], [11467477, 11467652], [11468335, 11468415], [11470146, 11470384]]	None
ENST00000586380	[[11466141, 11466248], [11467477, 11467652], [11468294, 11468415], [11470282, 11470396], [11470496, 11470514]]	[[11468349, 11468415], [11470282, 11470396], [11470496, 11470514]]
ENST00000591608	[[11466173, 11466248], [11467477, 11467652], [11468335, 11468415], [11470282, 11470396], [11470496, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474511], [11474836, 11474888], [11475022, 11476370]]	[[11468349, 11468415], [11470282, 11470396], [11470496, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474511], [11474836, 11474888], [11475022, 11475366]]
ENST00000588196	[[11468371, 11468415], [11470207, 11470570]]	None
ENST00000587801	[[11470398, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474444]]	None
ENST00000588360	[[11471941, 11472164], [11473188, 11473365], [11474388, 11474891]]	None
NM_001170635	[[11466061, 11466248], [11467477, 11467652], [11468335, 11468415], [11470282, 11470396], [11470496, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474511], [11474836, 11474888], [11475022, 11476374]]	[[11468349, 11468415], [11470282, 11470396], [11470496, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474511], [11474836, 11474888], [11475022, 11475366]]
NM_022737	[[11466061, 11466248], [11467477, 11467652], [11468335, 11468415], [11470207, 11470396], [11470496, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474495], [11474836, 11474888], [11475022, 11476374]]	[[11468349, 11468415], [11470207, 11470396], [11470496, 11470632], [11471892, 11472164], [11473188, 11473365], [11474388, 11474495], [11474836, 11474888], [11475022, 11475055]]

Promoter

Chrom	Start	End	Description
chr19	11466086	11466159	CAGE_peak_1_at_LPPR2_5end
chr19	11466167	11466180	CAGE_peak_2_at_LPPR2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I011354	11354785	11356637	1.96	[{'connected_gene': 'PLPPR2', 'score': 608.96}, {'connected_gene': 'ZNF627', 'score': 37.96}, {'connected_gene': 'ZNF625', 'score': 24.54}, {'connected_gene': 'ZNF441', 'score': 23.12}, {'connected_gene': 'ZNF20', 'score': 23.02}, {'connected_gene': 'ILF3', 'score': 21.75}, {'connected_gene': 'RPL18AP13', 'score': 21.28}, {'connected_gene': 'ZNF844', 'score': 21.28}, {'connected_gene': 'ZNF491', 'score': 20.97}, {'connected_gene': 'ENSG00000242615', 'score': 20.66}, {'connected_gene': 'ZNF136', 'score': 20.62}, {'connected_gene': 'ZNF439', 'score': 19.79}, {'connected_gene': 'ZNF44', 'score': 19.31}, {'connected_gene': 'QTRT1', 'score': 17.85}, {'connected_gene': 'ZNF433', 'score': 13.56}, {'connected_gene': 'ZNF763', 'score': 13.49}, {'connected_gene': 'ZNF823', 'score': 13.4}, {'connected_gene': 'KRI1', 'score': 12.86}, {'connected_gene': 'YIPF2', 'score': 12.84}, {'connected_gene': 'PRKCSH', 'score': 11.48}, {'connected_gene': 'ZNF887P', 'score': 11.18}, {'connected_gene': 'RPL28P5', 'score': 10.46}, {'connected_gene': 'ZNF700', 'score': 10.03}, {'connected_gene': 'ATG4D', 'score': 9.76}, {'connected_gene': 'RGL3', 'score': 7.2}, {'connected_gene': 'CCDC159', 'score': 0.39}, {'connected_gene': 'SWSAP1', 'score': 0.37}]
chr19	GH19I011440	11440684	11442855	0.65	[{'connected_gene': 'PLPPR2', 'score': 4.7}, {'connected_gene': 'CCDC151', 'score': 0.44}, {'connected_gene': 'PRKCSH', 'score': 0.44}, {'connected_gene': 'GC19M011460', 'score': 0.37}]
chr1	GH01I186182	186182238	186184624	1.12	[{'connected_gene': 'PRG4', 'score': 5.07}, {'connected_gene': 'ENSG00000224691', 'score': 0.44}, {'connected_gene': 'LOC105371654', 'score': 0.28}, {'connected_gene': 'HMCN1', 'score': 0.05}]
chr1	GH01I186296	186296785	186296844	0.5	[{'connected_gene': 'PRG4', 'score': 550.77}, {'connected_gene': 'LOC100131939', 'score': 5.22}, {'connected_gene': 'GC01M186320', 'score': 0.37}, {'connected_gene': 'RNU6-1240P', 'score': 0.37}]
chr1	GH01I186297	186296224	186296283	0.98	[{'connected_gene': 'PRG4', 'score': 550.77}, {'connected_gene': 'PIR58262', 'score': 0.2}]
chr1	GH01I186236	186236266	186237647	0.66	[{'connected_gene': 'PTGS2', 'score': 4.05}, {'connected_gene': 'PIR58262', 'score': 0.44}, {'connected_gene': 'PRG4', 'score': 0.22}]
chr19	GH19I011386	11386805	11387914	0.8	[{'connected_gene': 'RGL3', 'score': 20.78}, {'connected_gene': 'PLPPR2', 'score': 18.14}, {'connected_gene': 'KANK2', 'score': 5.13}, {'connected_gene': 'EPOR', 'score': 0.77}, {'connected_gene': 'GC19P011409', 'score': 0.34}]
chr19	GH19I011360	11360605	11362839	0.92	[{'connected_gene': 'RGL3', 'score': 17.44}, {'connected_gene': 'PLPPR2', 'score': 13.0}, {'connected_gene': 'EPOR', 'score': 12.19}, {'connected_gene': 'TSPAN16', 'score': 11.82}, {'connected_gene': 'SWSAP1', 'score': 0.39}]
chr1	GH01I186302	186302980	186306885	0.66	[{'connected_gene': 'ODR4', 'score': 10.8}, {'connected_gene': 'GC01M186320', 'score': 0.44}, {'connected_gene': 'RNU6-1240P', 'score': 0.44}, {'connected_gene': 'PRG4', 'score': 0.44}]
chr19	GH19I011369	11369725	11369854	0.6	[{'connected_gene': 'TMEM205', 'score': 12.65}, {'connected_gene': 'RAB3D', 'score': 12.65}, {'connected_gene': 'CCDC159', 'score': 12.63}, {'connected_gene': 'TSPAN16', 'score': 12.11}, {'connected_gene': 'SWSAP1', 'score': 0.77}, {'connected_gene': 'ENSG00000267277', 'score': 0.44}, {'connected_gene': 'PLPPR2', 'score': 0.39}]
chr19	GH19I011293	11293365	11294620	1.52	[{'connected_gene': 'ILF3', 'score': 54.09}, {'connected_gene': 'ENSG00000267174', 'score': 47.68}, {'connected_gene': 'KRI1', 'score': 41.84}, {'connected_gene': 'ZNF136', 'score': 39.14}, {'connected_gene': 'RAVER1', 'score': 29.1}, {'connected_gene': 'ZNF627', 'score': 27.83}, {'connected_gene': 'ZNF700', 'score': 27.07}, {'connected_gene': 'CDC37', 'score': 26.02}, {'connected_gene': 'ZNF844', 'score': 19.82}, {'connected_gene': 'ZNF823', 'score': 13.39}, {'connected_gene': 'ZNF763', 'score': 13.03}, {'connected_gene': 'ZNF878', 'score': 12.75}, {'connected_gene': 'ZNF625', 'score': 12.66}, {'connected_gene': 'ZNF491', 'score': 12.32}, {'connected_gene': 'ZNF439', 'score': 11.63}, {'connected_gene': 'ZNF20', 'score': 11.59}, {'connected_gene': 'ZNF887P', 'score': 11.17}, {'connected_gene': 'PRKCSH', 'score': 11.08}, {'connected_gene': 'ZNF441', 'score': 10.79}, {'connected_gene': 'SWSAP1', 'score': 10.59}, {'connected_gene': 'RPL28P5', 'score': 10.46}, {'connected_gene': 'TYK2', 'score': 10.41}, {'connected_gene': 'ZNF433-AS1', 'score': 10.02}, {'connected_gene': 'ATG4D', 'score': 9.76}, {'connected_gene': 'QTRT1', 'score': 9.73}, {'connected_gene': 'ENSG00000242615', 'score': 9.73}, {'connected_gene': 'RPL18AP13', 'score': 9.7}, {'connected_gene': 'PLPPR2', 'score': 8.03}, {'connected_gene': 'EPOR', 'score': 6.92}, {'connected_gene': 'DOCK6', 'score': 5.8}, {'connected_gene': 'CCDC159', 'score': 4.31}, {'connected_gene': 'C19orf38', 'score': 3.43}, {'connected_gene': 'ACP5', 'score': 1.5}, {'connected_gene': 'TSPAN16', 'score': 0.77}]
chr19	GH19I011179	11179612	11180801	1.1	[{'connected_gene': 'SPC24', 'score': 12.89}, {'connected_gene': 'PLPPR2', 'score': 5.95}, {'connected_gene': 'GC19P011173', 'score': 0.44}, {'connected_gene': 'KANK2', 'score': 0.37}]
chr1	GH01I186288	186288433	186288598	0.86	[{'connected_gene': 'RNU6-1240P', 'score': 10.29}, {'connected_gene': 'PRG4', 'score': 0.44}, {'connected_gene': 'PIR58262', 'score': 0.21}]
chr1	GH01I186177	186177830	186180137	0.59	[{'connected_gene': 'ENSG00000224691', 'score': 550.77}, {'connected_gene': 'PRG4', 'score': 5.59}, {'connected_gene': 'LOC105371654', 'score': 0.26}, {'connected_gene': 'HMCN1', 'score': 0.04}]
chr19	GH19I011373	11373205	11379434	2.53	[{'connected_gene': 'PIR61774', 'score': 550.77}, {'connected_gene': 'ENSG00000267277', 'score': 550.77}, {'connected_gene': 'SWSAP1', 'score': 550.77}, {'connected_gene': 'ILF3', 'score': 48.6}, {'connected_gene': 'KRI1', 'score': 43.59}, {'connected_gene': 'ZNF627', 'score': 37.21}, {'connected_gene': 'ZNF136', 'score': 35.31}, {'connected_gene': 'ZNF442', 'score': 35.14}, {'connected_gene': 'ZNF844', 'score': 34.32}, {'connected_gene': 'ZNF44', 'score': 29.56}, {'connected_gene': 'TIMM29', 'score': 29.24}, {'connected_gene': 'ZNF625', 'score': 24.43}, {'connected_gene': 'ZNF823', 'score': 23.77}, {'connected_gene': 'ZNF491', 'score': 23.26}, {'connected_gene': 'ZNF563', 'score': 22.85}, {'connected_gene': 'ZNF20', 'score': 21.65}, {'connected_gene': 'ZNF763', 'score': 18.75}, {'connected_gene': 'ZNF441', 'score': 12.34}, {'connected_gene': 'TMEM205', 'score': 12.2}, {'connected_gene': 'CCDC159', 'score': 12.18}, {'connected_gene': 'RAB3D', 'score': 12.18}, {'connected_gene': 'YIPF2', 'score': 12.07}, {'connected_gene': 'ZNF878', 'score': 11.83}, {'connected_gene': 'HNRNPA1P10', 'score': 11.52}, {'connected_gene': 'ZNF887P', 'score': 11.18}, {'connected_gene': 'CARM1', 'score': 10.9}, {'connected_gene': 'ZNF700', 'score': 10.41}, {'connected_gene': 'RPL18AP13', 'score': 9.74}, {'connected_gene': 'QTRT1', 'score': 9.73}, {'connected_gene': 'CDC37', 'score': 9.73}, {'connected_gene': 'PLPPR2', 'score': 7.81}, {'connected_gene': 'ELAVL3', 'score': 6.16}, {'connected_gene': 'PRKCSH', 'score': 5.16}, {'connected_gene': 'ZNF439', 'score': 2.17}, {'connected_gene': 'CCDC151', 'score': 2.05}, {'connected_gene': 'ZNF653', 'score': 2.01}, {'connected_gene': 'SMARCA4', 'score': 1.58}, {'connected_gene': 'EPOR', 'score': 0.44}]
chr1	GH01I185559	185559708	185561202	1.18	[{'connected_gene': 'GC01M185557', 'score': 550.77}, {'connected_gene': 'LINC01350', 'score': 17.16}, {'connected_gene': 'IVNS1ABP', 'score': 11.32}, {'connected_gene': 'PRG4', 'score': 4.53}, {'connected_gene': 'GC01P185628', 'score': 0.2}]