PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000354323	[[35906188, 35907138]]	[[35906284, 35906632]]
NM_001039792	[[35906188, 35907138]]	[[35906284, 35906632]]

Promoter

Chrom	Start	End	Description
chr9	35906117	35906129	CAGE_peak_3_at_HRCT1_5end
chr9	35906176	35906225	CAGE_peak_1_at_HRCT1_5end
chr9	35906227	35906248	CAGE_peak_2_at_HRCT1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I035509	35509301	35512722	1.28	[{'connected_gene': 'ARHGEF39', 'score': 5.21}, {'connected_gene': 'HRCT1', 'score': 4.27}, {'connected_gene': 'CCDC107', 'score': 3.98}, {'connected_gene': 'RPL36AP33', 'score': 0.77}, {'connected_gene': 'RUSC2', 'score': 0.34}, {'connected_gene': 'PIR61372', 'score': 0.28}]
chr9	GH09I035913	35913401	35921082	1.42	[{'connected_gene': 'PIGO', 'score': 33.92}, {'connected_gene': 'ARHGEF39', 'score': 23.34}, {'connected_gene': 'RGP1', 'score': 20.5}, {'connected_gene': 'TLN1', 'score': 19.76}, {'connected_gene': 'ENSG00000231393', 'score': 18.15}, {'connected_gene': 'GBA2', 'score': 16.51}, {'connected_gene': 'SPAAR', 'score': 16.05}, {'connected_gene': 'CLTA', 'score': 11.84}, {'connected_gene': 'RECK', 'score': 11.56}, {'connected_gene': 'NDUFA5P4', 'score': 10.85}, {'connected_gene': 'OR13J1', 'score': 10.83}, {'connected_gene': 'FAM221B', 'score': 10.83}, {'connected_gene': 'TMEM8B', 'score': 10.8}, {'connected_gene': 'SPAG8', 'score': 10.29}, {'connected_gene': 'ENSG00000227388', 'score': 10.15}, {'connected_gene': 'NPR2', 'score': 10.13}, {'connected_gene': 'CD72', 'score': 9.94}, {'connected_gene': 'HINT2', 'score': 9.9}, {'connected_gene': 'ENSG00000228843', 'score': 9.88}, {'connected_gene': 'MSMP', 'score': 9.88}, {'connected_gene': 'GLIPR2', 'score': 9.79}, {'connected_gene': 'CREB3', 'score': 9.52}, {'connected_gene': 'OR2S1P', 'score': 8.33}, {'connected_gene': 'HRCT1', 'score': 7.93}, {'connected_gene': 'GC09P035912', 'score': 0.77}, {'connected_gene': 'PGAM1P2', 'score': 0.31}]
chr9	GH09I036023	36023544	36023693	0.59	[{'connected_gene': 'OR2AM1P', 'score': 550.77}, {'connected_gene': 'HRCT1', 'score': 10.49}, {'connected_gene': 'GLIPR2', 'score': 10.26}, {'connected_gene': 'GBA2', 'score': 9.28}, {'connected_gene': 'TMEM8B', 'score': 9.28}, {'connected_gene': 'HINT2', 'score': 9.28}, {'connected_gene': 'SPAG8', 'score': 9.27}, {'connected_gene': 'MSMP', 'score': 9.06}, {'connected_gene': 'ENSG00000228843', 'score': 9.06}, {'connected_gene': 'RGP1', 'score': 9.06}, {'connected_gene': 'GNE', 'score': 8.65}, {'connected_gene': 'RECK', 'score': 0.39}]
chr9	GH09I035755	35755533	35759306	1.48	[{'connected_gene': 'MSMP', 'score': 550.77}, {'connected_gene': 'ENSG00000228843', 'score': 550.77}, {'connected_gene': 'TMEM8B', 'score': 19.75}, {'connected_gene': 'NPR2', 'score': 5.99}, {'connected_gene': 'HRCT1', 'score': 4.94}, {'connected_gene': 'PHF24', 'score': 4.56}, {'connected_gene': 'RGP1', 'score': 0.44}]
chr9	GH09I035951	35951506	35953113	0.69	[{'connected_gene': 'HRCT1', 'score': 5.3}, {'connected_gene': 'OR2S1P', 'score': 5.18}, {'connected_gene': 'TMEM8B', 'score': 4.6}, {'connected_gene': 'PGAM1P2', 'score': 0.44}, {'connected_gene': 'OR2S2', 'score': 0.44}]
chr9	GH09I035904	35904490	35911844	2.1	[{'connected_gene': 'HRCT1', 'score': 569.7}, {'connected_gene': 'SPAAR', 'score': 568.78}, {'connected_gene': 'TMEM8B', 'score': 17.6}, {'connected_gene': 'PIGO', 'score': 16.02}, {'connected_gene': 'OR13J1', 'score': 14.07}, {'connected_gene': 'FAM221B', 'score': 11.61}, {'connected_gene': 'NDUFA5P4', 'score': 10.92}, {'connected_gene': 'ENSG00000227388', 'score': 10.64}, {'connected_gene': 'NPR2', 'score': 10.62}, {'connected_gene': 'FANCG', 'score': 10.59}, {'connected_gene': 'SPAG8', 'score': 10.49}, {'connected_gene': 'OR2S1P', 'score': 10.44}, {'connected_gene': 'HINT2', 'score': 10.43}, {'connected_gene': 'GBA2', 'score': 9.64}, {'connected_gene': 'TLN1', 'score': 9.64}, {'connected_gene': 'CREB3', 'score': 9.64}, {'connected_gene': 'GLIPR2', 'score': 9.51}, {'connected_gene': 'ENSG00000228843', 'score': 9.42}, {'connected_gene': 'MSMP', 'score': 9.42}, {'connected_gene': 'RGP1', 'score': 9.42}, {'connected_gene': 'DNAJB5', 'score': 4.57}, {'connected_gene': 'CCDC107', 'score': 4.29}, {'connected_gene': 'OR2S2', 'score': 1.72}, {'connected_gene': 'LOC105376027', 'score': 0.77}]
chr9	GH09I035844	35843705	35847000	1.15	[{'connected_gene': 'TMEM8B', 'score': 22.5}, {'connected_gene': 'HRCT1', 'score': 10.1}, {'connected_gene': 'OR13E1P', 'score': 5.97}, {'connected_gene': 'FAM221B', 'score': 0.39}]
chr9	GH09I035995	35995660	35998333	0.38	[{'connected_gene': 'OR13C6P', 'score': 10.67}, {'connected_gene': 'OR2S1P', 'score': 5.28}, {'connected_gene': 'HRCT1', 'score': 5.03}, {'connected_gene': 'OR13C7', 'score': 0.44}]
chr9	GH09I036016	36016898	36019790	0.51	[{'connected_gene': 'CLTA', 'score': 11.17}, {'connected_gene': 'HRCT1', 'score': 10.78}, {'connected_gene': 'GLIPR2', 'score': 10.72}, {'connected_gene': 'ENSG00000227388', 'score': 10.09}, {'connected_gene': 'NPR2', 'score': 10.09}, {'connected_gene': 'GNE', 'score': 9.42}, {'connected_gene': 'OR2AM1P', 'score': 0.77}, {'connected_gene': 'OR2S1P', 'score': 0.44}]
chr9	GH09I035161	35161011	35163656	1.99	[{'connected_gene': 'UNC13B', 'score': 561.4}, {'connected_gene': 'NPR2', 'score': 11.81}, {'connected_gene': 'OR13E1P', 'score': 11.75}, {'connected_gene': 'HRCT1', 'score': 11.06}, {'connected_gene': 'FAM214B', 'score': 10.93}, {'connected_gene': 'TMEM8B', 'score': 10.03}, {'connected_gene': 'GC09P035160', 'score': 0.77}, {'connected_gene': 'GC09M035178', 'score': 0.37}]
chr9	GH09I035770	35770610	35773077	0.74	[{'connected_gene': 'ENSG00000227388', 'score': 550.77}, {'connected_gene': 'NPR2', 'score': 13.62}, {'connected_gene': 'HRCT1', 'score': 7.74}, {'connected_gene': 'ENSG00000228843', 'score': 0.39}]