PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000331272	[[103370422, 103371167], [103371384, 103371526], [103372093, 103372234], [103384501, 103384567], [103427642, 103427737], [103432671, 103432804], [103433244, 103433430], [103436097, 103436193], [103454137, 103455016]]	[[103371047, 103371167], [103371384, 103371526], [103372093, 103372234], [103384501, 103384567], [103427642, 103427737], [103432671, 103432804], [103433244, 103433430], [103436097, 103436193], [103454137, 103454397]]
ENST00000457105	[[103384503, 103384567], [103427642, 103427737], [103432671, 103432804], [103433244, 103433430], [103436097, 103436193], [103454996, 103455052]]	None
ENST00000470093	[[103370422, 103371167], [103371384, 103371526], [103372093, 103372234], [103384501, 103386656]]	None
ENST00000482428	[[103371413, 103371526], [103372093, 103372234], [103372760, 103372910]]	None
ENST00000489578	[[103433321, 103433430], [103436097, 103436471]]	None
NM_022039	[[103370420, 103371167], [103371384, 103371526], [103372093, 103372234], [103384501, 103384567], [103427642, 103427737], [103432671, 103432804], [103433244, 103433430], [103436097, 103436193], [103454137, 103454743]]	[[103371047, 103371167], [103371384, 103371526], [103372093, 103372234], [103384501, 103384567], [103427642, 103427737], [103432671, 103432804], [103433244, 103433430], [103436097, 103436193], [103454137, 103454397]]
NR_136613	[[103370420, 103371167], [103371384, 103371526], [103372093, 103372234], [103384501, 103384567], [103432671, 103432804], [103433244, 103433430], [103436097, 103436193], [103454137, 103454743]]	None
NM_001323541	[[103370420, 103371167], [103371384, 103371526], [103372093, 103372234], [103384501, 103384567], [103427642, 103427737], [103432671, 103432804], [103433244, 103433430], [103436097, 103436193], [103454996, 103455052]]	[[103371047, 103371167], [103371384, 103371526], [103372093, 103372234], [103384501, 103384567], [103427642, 103427737], [103432671, 103432804], [103433244, 103433430]]

Promoter

Chrom	Start	End	Description
chr10	103436465	103436468	CAGE_peak_3_at_FBXW4_5end
chr10	103454876	103454962	CAGE_peak_1_at_FBXW4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I101716	101716904	101717053	0.59	[{'connected_gene': 'FBXW4', 'score': 11.62}, {'connected_gene': 'POLL', 'score': 10.6}, {'connected_gene': 'DPCD', 'score': 10.58}, {'connected_gene': 'ENSG00000224817', 'score': 0.44}, {'connected_gene': 'LOC105378458', 'score': 0.23}]
chr10	GH10I101692	101692776	101695918	2.33	[{'connected_gene': 'FBXW4', 'score': 550.77}, {'connected_gene': 'PPRC1', 'score': 40.74}, {'connected_gene': 'GBF1', 'score': 32.68}, {'connected_gene': 'MRPL43', 'score': 30.36}, {'connected_gene': 'LDB1', 'score': 23.72}, {'connected_gene': 'ENSG00000272572', 'score': 22.8}, {'connected_gene': 'HPS6', 'score': 17.22}, {'connected_gene': 'TWNK', 'score': 10.82}, {'connected_gene': 'SUFU', 'score': 10.73}, {'connected_gene': 'LZTS2', 'score': 10.04}, {'connected_gene': 'C10orf76', 'score': 10.01}, {'connected_gene': 'PDZD7', 'score': 9.66}, {'connected_gene': 'BTRC', 'score': 5.64}, {'connected_gene': 'DPCD', 'score': 4.6}, {'connected_gene': 'MGEA5', 'score': 1.23}, {'connected_gene': 'RNU6-1165P', 'score': 0.19}]
chr10	GH10I101668	101668261	101668939	0.2	[{'connected_gene': 'FBXW4', 'score': 11.14}, {'connected_gene': 'FGF8', 'score': 10.6}, {'connected_gene': 'RNU6-1165P', 'score': 10.46}, {'connected_gene': 'POLL', 'score': 9.74}, {'connected_gene': 'DPCD', 'score': 9.72}]
chr10	GH10I101691	101691200	101691401	0.43	[{'connected_gene': 'FBXW4', 'score': 0.77}, {'connected_gene': 'RNU6-1165P', 'score': 0.2}]
chr10	GH10I101682	101682136	101683859	0.8	[{'connected_gene': 'FBXW4', 'score': 0.39}, {'connected_gene': 'RNU6-1165P', 'score': 0.21}]
chr10	GH10I101690	101690600	101690800	0.52	[{'connected_gene': 'FBXW4', 'score': 0.77}, {'connected_gene': 'RNU6-1165P', 'score': 0.2}]
chr10	GH10I101616	101616886	101618129	0.74	[{'connected_gene': 'DPCD', 'score': 16.08}, {'connected_gene': 'POLL', 'score': 11.12}, {'connected_gene': 'FGF8', 'score': 11.05}, {'connected_gene': 'BTRC', 'score': 9.4}, {'connected_gene': 'RNU6-1165P', 'score': 0.44}, {'connected_gene': 'MIR3158-2', 'score': 0.37}, {'connected_gene': 'FBXW4', 'score': 0.18}]
chr10	GH10I101725	101725852	101726422	0.31	[{'connected_gene': 'FGF8', 'score': 11.32}, {'connected_gene': 'FBXW4', 'score': 11.3}, {'connected_gene': 'POLL', 'score': 10.34}, {'connected_gene': 'DPCD', 'score': 10.32}, {'connected_gene': 'HPS6', 'score': 9.11}, {'connected_gene': 'ENSG00000224817', 'score': 0.37}, {'connected_gene': 'LOC105378458', 'score': 0.26}]
chr10	GH10I101364	101364264	101365122	1.28	[{'connected_gene': 'RNU2-59P', 'score': 550.77}, {'connected_gene': 'GC10M101365', 'score': 550.77}, {'connected_gene': 'PPRC1', 'score': 29.34}, {'connected_gene': 'HPS6', 'score': 26.96}, {'connected_gene': 'LDB1', 'score': 22.38}, {'connected_gene': 'GBF1', 'score': 20.35}, {'connected_gene': 'MRPL43', 'score': 9.7}, {'connected_gene': 'BTRC', 'score': 8.74}, {'connected_gene': 'FBXW4', 'score': 1.63}]
chr10	GH10I101655	101655704	101655833	0.2	[{'connected_gene': 'RNU6-1165P', 'score': 10.88}, {'connected_gene': 'FBXW4', 'score': 0.28}]
chr10	GH10I101642	101642663	101645492	0.43	[{'connected_gene': 'RNU6-1165P', 'score': 11.9}, {'connected_gene': 'POLL', 'score': 11.16}, {'connected_gene': 'DPCD', 'score': 11.13}, {'connected_gene': 'FGF8', 'score': 10.45}, {'connected_gene': 'RNU2-43P', 'score': 9.59}, {'connected_gene': 'HPS6', 'score': 6.5}, {'connected_gene': 'FBXW4', 'score': 0.23}]
chr10	GH10I101615	101615124	101615273	0.38	[{'connected_gene': 'RNU6-1165P', 'score': 0.44}, {'connected_gene': 'MIR3158-2', 'score': 0.39}, {'connected_gene': 'FBXW4', 'score': 0.18}]
chr10	GH10I101610	101610967	101612660	0.43	[{'connected_gene': 'MIR3158-2', 'score': 0.39}, {'connected_gene': 'RNU6-1165P', 'score': 0.39}, {'connected_gene': 'FBXW4', 'score': 0.18}]