PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000218867	[[23755090, 23755214], [23777833, 23778028], [23808749, 23808851], [23824768, 23824856], [23853497, 23853617], [23869553, 23869626], [23894775, 23894899], [23898506, 23899304]]	[[23777833, 23778028], [23808749, 23808851], [23824768, 23824856], [23853497, 23853617], [23869553, 23869626], [23894775, 23894899], [23898506, 23898680]]
ENST00000537476	[[23755104, 23755214], [23771286, 23771315], [23777833, 23778028], [23808749, 23808851], [23824768, 23824856], [23853497, 23853617], [23869553, 23869626], [23894775, 23894899], [23898506, 23899080]]	[[23777833, 23778028], [23808749, 23808851], [23824768, 23824856], [23853497, 23853617], [23869553, 23869626], [23894775, 23894899], [23898506, 23898680]]
ENST00000545013	[[23755144, 23755214], [23765385, 23765536], [23777833, 23778028], [23808749, 23808851], [23824768, 23824856], [23853497, 23853617], [23869553, 23869626], [23894775, 23894899], [23898506, 23898680]]	[[23777833, 23778028], [23808749, 23808851], [23824768, 23824856], [23853497, 23853617], [23869553, 23869626], [23894775, 23894899], [23898506, 23898680]]
NM_000231	[[23755059, 23755214], [23777833, 23778028], [23808749, 23808851], [23824768, 23824856], [23853497, 23853617], [23869553, 23869626], [23894775, 23894899], [23898506, 23899304]]	[[23777833, 23778028], [23808749, 23808851], [23824768, 23824856], [23853497, 23853617], [23869553, 23869626], [23894775, 23894899], [23898506, 23898680]]

Promoter

Chrom	Start	End	Description
chr13	23755054	23755092	CAGE_peak_2_at_SGCG_5end
chr13	23755099	23755123	CAGE_peak_3_at_SGCG_5end
chr13	23755127	23755166	CAGE_peak_1_at_SGCG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I023160	23160994	23161355	0.71	[{'connected_gene': 'SGCG', 'score': 550.77}, {'connected_gene': 'LINC00362', 'score': 0.44}]
chr13	GH13I023069	23069245	23070215	0.31	[{'connected_gene': 'SGCG', 'score': 10.42}, {'connected_gene': 'ENSG00000253094', 'score': 9.59}, {'connected_gene': 'RPL7AP73', 'score': 9.59}, {'connected_gene': 'LOC105370112', 'score': 0.21}, {'connected_gene': 'LOC105370111', 'score': 0.16}]
chr13	GH13I023180	23180454	23181747	0.7	[{'connected_gene': 'SGCG', 'score': 560.19}, {'connected_gene': 'RNU6-58P', 'score': 11.2}, {'connected_gene': 'PIR56522', 'score': 0.44}, {'connected_gene': 'LINC00362', 'score': 0.39}]
chr13	GH13I023212	23212882	23212951	0.54	[{'connected_gene': 'SGCG', 'score': 15.92}, {'connected_gene': 'RNU6-58P', 'score': 0.77}, {'connected_gene': 'PIR56522', 'score': 0.31}]
chr13	GH13I023159	23159088	23160962	1.02	[{'connected_gene': 'SGCG', 'score': 558.33}, {'connected_gene': 'TATDN2P3', 'score': 6.91}, {'connected_gene': 'RNY3P4', 'score': 0.44}, {'connected_gene': 'GC13M023153', 'score': 0.44}]
chr13	GH13I023290	23290082	23290291	0.2	[{'connected_gene': 'SGCG', 'score': 10.46}, {'connected_gene': 'SDAD1P4', 'score': 0.34}, {'connected_gene': 'RPLP1P13', 'score': 0.18}]
chr13	GH13I023574	23574115	23574482	0.22	[{'connected_gene': 'TNFRSF19', 'score': 3.23}, {'connected_gene': 'SGCG', 'score': 1.27}, {'connected_gene': 'LOC105370114', 'score': 0.11}]
chr13	GH13I023319	23319003	23325016	1.12	[{'connected_gene': 'SACS', 'score': 17.81}, {'connected_gene': 'SDAD1P4', 'score': 0.23}, {'connected_gene': 'RPLP1P13', 'score': 0.23}, {'connected_gene': 'SGCG', 'score': 0.1}]
chr13	GH13I023241	23241198	23241599	0.22	[{'connected_gene': 'TATDN2P3', 'score': 0.77}, {'connected_gene': 'RNU6-58P', 'score': 0.34}, {'connected_gene': 'SGCG', 'score': 0.18}]
chr13	GH13I023020	23020342	23020471	0.65	[{'connected_gene': 'ENSG00000253094', 'score': 10.65}, {'connected_gene': 'RPL7AP73', 'score': 10.65}, {'connected_gene': 'SGCG', 'score': 9.85}, {'connected_gene': 'LOC105370111', 'score': 0.26}, {'connected_gene': 'LOC105370112', 'score': 0.14}]