PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296575	[[145567172, 145568106], [145573756, 145573949], [145579941, 145580098], [145580788, 145580990], [145627682, 145627834], [145628238, 145628412], [145629319, 145629463], [145633101, 145633223], [145635376, 145635500], [145636451, 145636582], [145640026, 145640108], [145655892, 145656041], [145658915, 145666423]]	[[145567827, 145568106], [145573756, 145573949], [145579941, 145580098], [145580788, 145580990], [145627682, 145627834], [145628238, 145628412], [145629319, 145629463], [145633101, 145633223], [145635376, 145635500], [145636451, 145636582], [145640026, 145640108], [145655892, 145656041], [145658915, 145659109]]
ENST00000434550	[[145567323, 145568106], [145573756, 145573949], [145579941, 145580098], [145580788, 145581425]]	[[145567827, 145568106], [145573756, 145573949], [145579941, 145580098], [145580788, 145581122]]
ENST00000505891	[[145568250, 145568379], [145573756, 145573949], [145580013, 145580098], [145580788, 145580928]]	None
ENST00000511314	[[145569331, 145569908], [145573756, 145573949], [145576034, 145576185], [145579941, 145580098], [145580788, 145581008]]	None
ENST00000515080	[[145571766, 145572108], [145573756, 145573949], [145579941, 145579991]]	None
ENST00000509630	[[145573810, 145573949], [145579941, 145580098], [145580788, 145580990], [145606752, 145606817]]	None
ENST00000512791	[[145629282, 145629463], [145633101, 145633223], [145635376, 145635500], [145636152, 145636225], [145636451, 145636775]]	None
ENST00000503090	[[145656018, 145656041], [145658915, 145659044], [145659870, 145660045]]	None
NM_022475	[[145567147, 145568106], [145573756, 145573949], [145579941, 145580098], [145580788, 145580990], [145627682, 145627834], [145628238, 145628412], [145629319, 145629463], [145633101, 145633223], [145635376, 145635500], [145636451, 145636582], [145640026, 145640108], [145655892, 145656041], [145658915, 145659881]]	[[145567827, 145568106], [145573756, 145573949], [145579941, 145580098], [145580788, 145580990], [145627682, 145627834], [145628238, 145628412], [145629319, 145629463], [145633101, 145633223], [145635376, 145635500], [145636451, 145636582], [145640026, 145640108], [145655892, 145656041], [145658915, 145659109]]

Promoter

Chrom	Start	End	Description
chr4	145566841	145566862	CAGE_peak_10_at_HHIP_5end
chr4	145566874	145566889	CAGE_peak_15_at_HHIP_5end
chr4	145567278	145567296	CAGE_peak_3_at_HHIP_5end
chr4	145567297	145567355	CAGE_peak_1_at_HHIP_5end
chr4	145567356	145567368	CAGE_peak_7_at_HHIP_5end
chr4	145567374	145567390	CAGE_peak_6_at_HHIP_5end
chr4	145567391	145567425	CAGE_peak_4_at_HHIP_5end
chr4	145567426	145567455	CAGE_peak_5_at_HHIP_5end
chr4	145567461	145567482	CAGE_peak_9_at_HHIP_5end
chr4	145567538	145567544	CAGE_peak_13_at_HHIP_5end
chr4	145567563	145567572	CAGE_peak_8_at_HHIP_5end
chr4	145567767	145567851	CAGE_peak_2_at_HHIP_5end
chr4	145629311	145629322	CAGE_peak_17_at_HHIP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I144627	144627689	144628038	0.51	[{'connected_gene': 'HHIP-AS1', 'score': 13.03}, {'connected_gene': 'HHIP', 'score': 0.37}, {'connected_gene': 'KRT18P51', 'score': 0.22}, {'connected_gene': 'GYPA', 'score': 0.07}]
chr4	GH04I144700	144700767	144702128	0.38	[{'connected_gene': 'HHIP-AS1', 'score': 11.44}, {'connected_gene': 'HHIP', 'score': 11.4}, {'connected_gene': 'RTN3P1', 'score': 4.94}, {'connected_gene': 'GC04P144686', 'score': 0.39}, {'connected_gene': 'ENSG00000273621', 'score': 0.28}, {'connected_gene': 'GYPA', 'score': 0.1}]
chr4	GH04I144658	144658531	144663105	0.54	[{'connected_gene': 'HHIP-AS1', 'score': 550.77}, {'connected_gene': 'ENSG00000248356', 'score': 11.39}, {'connected_gene': 'RTN3P1', 'score': 5.28}, {'connected_gene': 'HHIP', 'score': 0.39}, {'connected_gene': 'GYPA', 'score': 0.08}]
chr4	GH04I144578	144578233	144584927	0.92	[{'connected_gene': 'HHIP', 'score': 11.05}, {'connected_gene': 'HHIP-AS1', 'score': 11.02}, {'connected_gene': 'KRT18P51', 'score': 0.44}, {'connected_gene': 'GYPA', 'score': 0.06}]
chr4	GH04I144577	144577445	144577562	0.22	[{'connected_gene': 'HHIP', 'score': 10.79}, {'connected_gene': 'HHIP-AS1', 'score': 10.76}, {'connected_gene': 'KRT18P51', 'score': 0.44}, {'connected_gene': 'GYPA', 'score': 0.06}]
chr4	GH04I144649	144649702	144649933	0.78	[{'connected_gene': 'HHIP', 'score': 0.77}, {'connected_gene': 'HHIP-AS1', 'score': 0.39}, {'connected_gene': 'GYPA', 'score': 0.07}]
chr4	GH04I144666	144666969	144667118	0.4	[{'connected_gene': 'HHIP', 'score': 12.71}, {'connected_gene': 'HHIP-AS1', 'score': 0.44}, {'connected_gene': 'GC04P144686', 'score': 0.37}, {'connected_gene': 'GYPA', 'score': 0.08}]
chr4	GH04I144708	144708092	144712643	0.66	[{'connected_gene': 'HHIP', 'score': 15.76}, {'connected_gene': 'HHIP-AS1', 'score': 11.54}, {'connected_gene': 'GC04P144686', 'score': 0.34}, {'connected_gene': 'ENSG00000273621', 'score': 0.31}, {'connected_gene': 'GYPA', 'score': 0.1}]
chr4	GH04I144644	144644523	144648803	2.81	[{'connected_gene': 'HHIP', 'score': 550.77}, {'connected_gene': 'RTN3P1', 'score': 5.78}, {'connected_gene': 'HHIP-AS1', 'score': 0.39}, {'connected_gene': 'GYPA', 'score': 0.07}]
chr4	GH04I144591	144591188	144591872	0.72	[{'connected_gene': 'KRT18P51', 'score': 0.37}, {'connected_gene': 'HHIP', 'score': 0.23}, {'connected_gene': 'GYPA', 'score': 0.06}]
chr4	GH04I144664	144664201	144664400	0.4	[{'connected_gene': 'RTN3P1', 'score': 5.28}, {'connected_gene': 'HHIP-AS1', 'score': 0.77}, {'connected_gene': 'HHIP', 'score': 0.37}, {'connected_gene': 'GC04P144686', 'score': 0.34}, {'connected_gene': 'GYPA', 'score': 0.08}]
chr4	GH04I144650	144650401	144651000	0.51	[{'connected_gene': 'RTN3P1', 'score': 5.31}, {'connected_gene': 'HHIP', 'score': 0.77}, {'connected_gene': 'HHIP-AS1', 'score': 0.39}, {'connected_gene': 'GYPA', 'score': 0.07}]
chr4	GH04I144634	144634013	144636520	0.52	[{'connected_gene': 'RTN3P1', 'score': 5.34}, {'connected_gene': 'HHIP', 'score': 0.39}, {'connected_gene': 'KRT18P51', 'score': 0.21}, {'connected_gene': 'GYPA', 'score': 0.07}]
chr4	GH04I145034	145034180	145036033	1.23	[{'connected_gene': 'RN7SKP235', 'score': 550.77}, {'connected_gene': 'HHIP', 'score': 4.4}, {'connected_gene': 'ANAPC10', 'score': 0.21}, {'connected_gene': 'ENSG00000251452', 'score': 0.14}]
chr4	GH04I144651	144651690	144658513	0.62	[{'connected_gene': 'ENSG00000248356', 'score': 11.39}, {'connected_gene': 'OTUD4', 'score': 10.34}, {'connected_gene': 'ANAPC10', 'score': 10.05}, {'connected_gene': 'RTN3P1', 'score': 5.6}, {'connected_gene': 'HHIP-AS1', 'score': 0.44}, {'connected_gene': 'HHIP', 'score': 0.44}, {'connected_gene': 'GYPA', 'score': 0.08}]