PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000416695	[[33131912, 33135280], [33138210, 33138293]]	[[33134325, 33135276]]
ENST00000342462	[[33131916, 33135795], [33138210, 33138293]]	[[33134325, 33135687]]
NM_001039770	[[33131907, 33135795], [33138210, 33138293]]	[[33134325, 33135687]]
NM_001136238	[[33131907, 33135280], [33138210, 33138293]]	[[33134325, 33135276]]

Promoter

Chrom	Start	End	Description
chr3	33138286	33138319	CAGE_peak_1_at_TMPPE_5end,CAGE_peak_3_at_GLB1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I033437	33437191	33442682	2.31	[{'connected_gene': 'UBP1', 'score': 578.92}, {'connected_gene': 'PIR40256', 'score': 550.77}, {'connected_gene': 'CNOT10', 'score': 69.7}, {'connected_gene': 'PDCD6IP', 'score': 44.86}, {'connected_gene': 'FBXL2', 'score': 20.53}, {'connected_gene': 'GLB1', 'score': 20.05}, {'connected_gene': 'TMPPE', 'score': 19.35}, {'connected_gene': 'CMTM6', 'score': 9.75}, {'connected_gene': 'GC03M033417', 'score': 0.39}]
chr3	GH03I033385	33385019	33386992	0.78	[{'connected_gene': 'UBP1', 'score': 17.1}, {'connected_gene': 'FBXL2', 'score': 12.13}, {'connected_gene': 'CRTAP', 'score': 10.57}, {'connected_gene': 'SUSD5', 'score': 10.04}, {'connected_gene': 'CLASP2', 'score': 9.54}, {'connected_gene': 'TMPPE', 'score': 4.96}, {'connected_gene': 'RNU7-110P', 'score': 0.31}]
chr3	GH03I033054	33054133	33055837	1.34	[{'connected_gene': 'TMPPE', 'score': 11.29}, {'connected_gene': 'GLB1', 'score': 11.29}, {'connected_gene': 'SUGT1P2', 'score': 10.58}, {'connected_gene': 'CNOT10-AS1', 'score': 10.58}, {'connected_gene': 'CNOT10', 'score': 10.58}, {'connected_gene': 'CRTAP', 'score': 8.7}, {'connected_gene': 'SUMO2P10', 'score': 0.34}, {'connected_gene': 'SEC13P1', 'score': 0.34}]
chr3	GH03I032743	32743481	32744500	0.31	[{'connected_gene': 'TMPPE', 'score': 5.1}, {'connected_gene': 'GLB1', 'score': 4.42}, {'connected_gene': 'SUGT1P2', 'score': 0.44}, {'connected_gene': 'CNOT10-AS1', 'score': 0.44}, {'connected_gene': 'CNOT10', 'score': 0.22}]
chr3	GH03I033131	33131309	33132250	0.85	[{'connected_gene': 'TMPPE', 'score': 11.32}, {'connected_gene': 'GLB1', 'score': 11.32}, {'connected_gene': 'SUSD5', 'score': 10.69}, {'connected_gene': 'CLASP2', 'score': 9.53}, {'connected_gene': 'PIR55934', 'score': 0.39}, {'connected_gene': 'CRTAP', 'score': 0.37}, {'connected_gene': 'GC03P033114', 'score': 0.37}]
chr3	GH03I033124	33124320	33124886	0.2	[{'connected_gene': 'TMPPE', 'score': 11.25}, {'connected_gene': 'GLB1', 'score': 11.25}, {'connected_gene': 'SUSD5', 'score': 10.68}, {'connected_gene': 'CRTAP', 'score': 5.87}, {'connected_gene': 'GC03P033114', 'score': 0.39}, {'connected_gene': 'PIR55934', 'score': 0.37}]
chr3	GH03I033130	33130040	33130437	0.2	[{'connected_gene': 'TMPPE', 'score': 11.24}, {'connected_gene': 'GLB1', 'score': 11.24}, {'connected_gene': 'SUSD5', 'score': 10.69}, {'connected_gene': 'CRTAP', 'score': 4.57}, {'connected_gene': 'PIR55934', 'score': 0.39}, {'connected_gene': 'GC03P033114', 'score': 0.37}]
chr3	GH03I032963	32963911	32964290	0.58	[{'connected_gene': 'TMPPE', 'score': 10.43}, {'connected_gene': 'GLB1', 'score': 10.43}, {'connected_gene': 'TRIM71', 'score': 9.75}, {'connected_gene': 'CCR4', 'score': 4.01}, {'connected_gene': 'LOC105377022', 'score': 0.39}]
chr3	GH03I033074	33074569	33074718	0.74	[{'connected_gene': 'TMPPE', 'score': 11.96}, {'connected_gene': 'GLB1', 'score': 11.96}, {'connected_gene': 'CRTAP', 'score': 10.97}, {'connected_gene': 'SUGT1P2', 'score': 10.46}, {'connected_gene': 'CNOT10-AS1', 'score': 10.46}, {'connected_gene': 'CNOT10', 'score': 10.46}, {'connected_gene': 'SUMO2P10', 'score': 0.77}, {'connected_gene': 'SEC13P1', 'score': 0.26}]
chr3	GH03I033067	33067569	33067678	0.83	[{'connected_gene': 'TMPPE', 'score': 10.87}, {'connected_gene': 'GLB1', 'score': 10.87}, {'connected_gene': 'CRTAP', 'score': 10.34}, {'connected_gene': 'SUMO2P10', 'score': 0.44}, {'connected_gene': 'SEC13P1', 'score': 0.29}]
chr3	GH03I033119	33119507	33120308	0.2	[{'connected_gene': 'TMPPE', 'score': 11.59}, {'connected_gene': 'GLB1', 'score': 11.59}, {'connected_gene': 'CRTAP', 'score': 7.73}, {'connected_gene': 'GC03P033114', 'score': 0.44}, {'connected_gene': 'PIR55934', 'score': 0.34}]
chr3	GH03I033118	33118432	33119191	0.31	[{'connected_gene': 'TMPPE', 'score': 11.59}, {'connected_gene': 'GLB1', 'score': 11.59}, {'connected_gene': 'CRTAP', 'score': 6.25}, {'connected_gene': 'GC03P033114', 'score': 0.77}, {'connected_gene': 'PIR55934', 'score': 0.31}]
chr3	GH03I032734	32734785	32735520	0.2	[{'connected_gene': 'TMPPE', 'score': 5.2}, {'connected_gene': 'CNOT10-AS1', 'score': 0.77}, {'connected_gene': 'PIR58788', 'score': 0.29}, {'connected_gene': 'CNOT10', 'score': 0.23}]
chr3	GH03I033019	33019303	33019636	0.39	[{'connected_gene': 'CCR4', 'score': 22.02}, {'connected_gene': 'SUGT1P2', 'score': 10.78}, {'connected_gene': 'CNOT10-AS1', 'score': 10.77}, {'connected_gene': 'CNOT10', 'score': 10.77}, {'connected_gene': 'TMPPE', 'score': 10.57}, {'connected_gene': 'GLB1', 'score': 10.57}, {'connected_gene': 'CRTAP', 'score': 4.31}, {'connected_gene': 'SEC13P1', 'score': 0.39}, {'connected_gene': 'LOC105377022', 'score': 0.26}]
chr3	GH03I033044	33044587	33044934	0.78	[{'connected_gene': 'CCR4', 'score': 18.48}, {'connected_gene': 'TMPPE', 'score': 10.55}, {'connected_gene': 'GLB1', 'score': 10.55}, {'connected_gene': 'CRTAP', 'score': 5.28}, {'connected_gene': 'SEC13P1', 'score': 0.39}, {'connected_gene': 'SUMO2P10', 'score': 0.29}]
chr3	GH03I032121	32121001	32121200	0.62	[{'connected_gene': 'GLB1', 'score': 12.23}, {'connected_gene': 'TMPPE', 'score': 11.78}, {'connected_gene': 'CNOT10', 'score': 10.96}, {'connected_gene': 'STT3B', 'score': 10.63}, {'connected_gene': 'ENSG00000236732', 'score': 10.21}, {'connected_gene': 'GPD1L', 'score': 6.72}, {'connected_gene': 'GC03M031988', 'score': 0.06}]
chr3	GH03I033095	33095512	33098564	2.05	[{'connected_gene': 'GLB1', 'score': 557.27}, {'connected_gene': 'TMPPE', 'score': 550.77}, {'connected_gene': 'CNOT10', 'score': 10.51}, {'connected_gene': 'CRTAP', 'score': 8.62}, {'connected_gene': 'GC03P033091', 'score': 0.44}, {'connected_gene': 'GC03M033097', 'score': 0.39}]
chr3	GH03I033061	33061964	33064023	0.66	[{'connected_gene': 'GLB1', 'score': 20.16}, {'connected_gene': 'CRTAP', 'score': 18.54}, {'connected_gene': 'TMPPE', 'score': 10.98}, {'connected_gene': 'SUGT1P2', 'score': 10.51}, {'connected_gene': 'CNOT10-AS1', 'score': 10.51}, {'connected_gene': 'CNOT10', 'score': 10.5}, {'connected_gene': 'SUMO2P10', 'score': 0.39}, {'connected_gene': 'SEC13P1', 'score': 0.31}]
chr3	GH03I033060	33060104	33061378	0.4	[{'connected_gene': 'GLB1', 'score': 22.21}, {'connected_gene': 'CRTAP', 'score': 19.85}, {'connected_gene': 'TMPPE', 'score': 11.24}, {'connected_gene': 'SUGT1P2', 'score': 10.51}, {'connected_gene': 'CNOT10-AS1', 'score': 10.51}, {'connected_gene': 'CNOT10', 'score': 10.5}, {'connected_gene': 'SUMO2P10', 'score': 0.37}, {'connected_gene': 'SEC13P1', 'score': 0.31}]
chr3	GH03I033158	33158034	33160743	0.31	[{'connected_gene': 'SUSD5', 'score': 16.27}, {'connected_gene': 'CRTAP', 'score': 15.71}, {'connected_gene': 'TMPPE', 'score': 10.32}, {'connected_gene': 'GLB1', 'score': 10.32}, {'connected_gene': 'PIR50801', 'score': 0.44}, {'connected_gene': 'ENSG00000230119', 'score': 0.29}]
chr3	GH03I032832	32832968	32833621	0.96	[{'connected_gene': 'CNOT10', 'score': 53.96}, {'connected_gene': 'UBP1', 'score': 39.88}, {'connected_gene': 'PDCD6IP', 'score': 38.97}, {'connected_gene': 'FBXL2', 'score': 12.45}, {'connected_gene': 'TMPPE', 'score': 11.79}, {'connected_gene': 'GLB1', 'score': 10.3}, {'connected_gene': 'TRIM71', 'score': 0.37}, {'connected_gene': 'PIR32571', 'score': 0.26}, {'connected_gene': 'GC03M032797', 'score': 0.19}]
chr3	GH03I032684	32684049	32687361	2.06	[{'connected_gene': 'CNOT10', 'score': 575.49}, {'connected_gene': 'GLB1', 'score': 24.72}, {'connected_gene': 'TMPPE', 'score': 20.47}, {'connected_gene': 'UBP1', 'score': 11.03}, {'connected_gene': 'DYNC1LI1', 'score': 10.26}, {'connected_gene': 'RPL31P18', 'score': 10.15}, {'connected_gene': 'CMTM6', 'score': 10.15}, {'connected_gene': 'ENSG00000236732', 'score': 9.94}, {'connected_gene': 'TRIM71', 'score': 9.5}, {'connected_gene': 'PIR58788', 'score': 0.37}]
chr3	GH03I032708	32708809	32709639	0.92	[{'connected_gene': 'CNOT10', 'score': 11.53}, {'connected_gene': 'CNOT10-AS1', 'score': 11.5}, {'connected_gene': 'SUGT1P2', 'score': 11.45}, {'connected_gene': 'TRIM71', 'score': 10.34}, {'connected_gene': 'RPL31P18', 'score': 10.0}, {'connected_gene': 'CMTM6', 'score': 10.0}, {'connected_gene': 'TMPPE', 'score': 5.26}, {'connected_gene': 'PIR58788', 'score': 0.77}]
chr3	GH03I032856	32856308	32857300	0.83	[{'connected_gene': 'TRIM71', 'score': 11.76}, {'connected_gene': 'GLB1', 'score': 9.99}, {'connected_gene': 'TMPPE', 'score': 9.99}, {'connected_gene': 'PIR32571', 'score': 0.37}, {'connected_gene': 'GC03M032797', 'score': 0.25}]
chr3	GH03I032847	32847331	32852665	0.87	[{'connected_gene': 'TRIM71', 'score': 12.52}, {'connected_gene': 'CNOT10', 'score': 11.11}, {'connected_gene': 'PDCD6IP', 'score': 10.46}, {'connected_gene': 'TMPPE', 'score': 9.99}, {'connected_gene': 'GLB1', 'score': 9.99}, {'connected_gene': 'PIR32571', 'score': 0.31}, {'connected_gene': 'GC03M032797', 'score': 0.23}]
chr3	GH03I033797	33797494	33801159	2.1	[{'connected_gene': 'PDCD6IP', 'score': 595.17}, {'connected_gene': 'ENSG00000271020', 'score': 550.77}, {'connected_gene': 'LOC105377023', 'score': 550.77}, {'connected_gene': 'GC03M033793', 'score': 550.77}, {'connected_gene': 'GLB1', 'score': 10.71}, {'connected_gene': 'TMPPE', 'score': 10.64}, {'connected_gene': 'CLASP2', 'score': 10.51}, {'connected_gene': 'ENSG00000271324', 'score': 7.75}, {'connected_gene': 'LOC105377024', 'score': 0.18}]
chr3	GH03I033032	33032169	33033646	0.67	[{'connected_gene': 'SEC13P1', 'score': 550.77}, {'connected_gene': 'TMPPE', 'score': 10.51}, {'connected_gene': 'GLB1', 'score': 10.51}, {'connected_gene': 'SUGT1P2', 'score': 9.34}, {'connected_gene': 'CNOT10-AS1', 'score': 9.34}, {'connected_gene': 'CNOT10', 'score': 9.33}, {'connected_gene': 'SUSD5', 'score': 9.05}, {'connected_gene': 'CRTAP', 'score': 5.1}, {'connected_gene': 'LOC105377022', 'score': 0.22}]