PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000400602	[[21351468, 21358058], [21361103, 21361196], [21361619, 21361737], [21362624, 21362755], [21364600, 21364719], [21370214, 21370395], [21370902, 21371196], [21373303, 21373478], [21374294, 21374464], [21374969, 21375129], [21381595, 21381773], [21382574, 21382720], [21383221, 21383364], [21383929, 21384106], [21395842, 21396017], [21396270, 21396428], [21401205, 21401321], [21417036, 21417187], [21417908, 21418025], [21429765, 21429904], [21436855, 21436997], [21442734, 21442840], [21476808, 21476913]]	[[21357860, 21358058], [21361103, 21361196], [21361619, 21361737], [21362624, 21362755], [21364600, 21364719], [21370214, 21370395], [21370902, 21371196], [21373303, 21373478], [21374294, 21374464], [21374969, 21375129], [21381595, 21381773], [21382574, 21382720], [21383221, 21383364], [21383929, 21384106], [21395842, 21396017], [21396270, 21396428], [21401205, 21401321], [21417036, 21417187], [21417908, 21418025], [21429765, 21429904], [21436855, 21436997], [21442734, 21442840], [21476808, 21476877]]
ENST00000255305	[[21353013, 21358058], [21361103, 21361196], [21361619, 21361737], [21362624, 21362755], [21364600, 21364719], [21370214, 21370395], [21370902, 21371196], [21373303, 21373478], [21374294, 21374464], [21374969, 21375129], [21381595, 21381773], [21382574, 21382720], [21383221, 21383364], [21383929, 21384106], [21395842, 21396017], [21396270, 21396428], [21401205, 21401318], [21417033, 21417187], [21417908, 21418025], [21429765, 21429904], [21436855, 21436997], [21442734, 21442840], [21476808, 21476949]]	[[21357860, 21358058], [21361103, 21361196], [21361619, 21361737], [21362624, 21362755], [21364600, 21364719], [21370214, 21370395], [21370902, 21371196], [21373303, 21373478], [21374294, 21374464], [21374969, 21375129], [21381595, 21381773], [21382574, 21382720], [21383221, 21383364], [21383929, 21384106], [21395842, 21396017], [21396270, 21396428], [21401205, 21401318], [21417033, 21417187], [21417908, 21418025], [21429765, 21429904], [21436855, 21436997], [21442734, 21442840], [21476808, 21476877]]
ENST00000490513	[[21429772, 21429904], [21436855, 21436997], [21437107, 21437262], [21442734, 21442840], [21476808, 21477187]]	None
ENST00000465018	[[21442551, 21442840], [21476808, 21476886]]	None
NM_022459	[[21351467, 21358058], [21361103, 21361196], [21361619, 21361737], [21362624, 21362755], [21364600, 21364719], [21370214, 21370395], [21370902, 21371196], [21373303, 21373478], [21374294, 21374464], [21374969, 21375129], [21381595, 21381773], [21382574, 21382720], [21383221, 21383364], [21383929, 21384106], [21395842, 21396017], [21396270, 21396428], [21401205, 21401318], [21417033, 21417187], [21417908, 21418025], [21429765, 21429904], [21436855, 21436997], [21442734, 21442840], [21476808, 21476913]]	[[21357860, 21358058], [21361103, 21361196], [21361619, 21361737], [21362624, 21362755], [21364600, 21364719], [21370214, 21370395], [21370902, 21371196], [21373303, 21373478], [21374294, 21374464], [21374969, 21375129], [21381595, 21381773], [21382574, 21382720], [21383221, 21383364], [21383929, 21384106], [21395842, 21396017], [21396270, 21396428], [21401205, 21401318], [21417033, 21417187], [21417908, 21418025], [21429765, 21429904], [21436855, 21436997], [21442734, 21442840], [21476808, 21476877]]

Promoter

Chrom	Start	End	Description
chr13	21395866	21395879	CAGE_peak_6_at_XPO4_5end
chr13	21395886	21395893	CAGE_peak_7_at_XPO4_5end
chr13	21476875	21476899	CAGE_peak_1_at_XPO4_5end
chr13	21476900	21476918	CAGE_peak_2_at_XPO4_5end
chr13	21477124	21477144	CAGE_peak_3_at_XPO4_5end
chr13	21477148	21477185	CAGE_peak_4_at_XPO4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I020544	20544722	20544871	0.43	[{'connected_gene': 'IFT88', 'score': 12.8}, {'connected_gene': 'XPO4', 'score': 10.57}, {'connected_gene': 'CRYL1', 'score': 0.37}]
chr13	GH13I020538	20538800	20539001	0.54	[{'connected_gene': 'IFT88', 'score': 12.77}, {'connected_gene': 'XPO4', 'score': 10.57}, {'connected_gene': 'CRYL1', 'score': 0.39}]
chr13	GH13I020545	20544401	20544600	0.38	[{'connected_gene': 'IFT88', 'score': 12.8}, {'connected_gene': 'XPO4', 'score': 10.57}, {'connected_gene': 'CRYL1', 'score': 0.37}]
chr13	GH13I020708	20708427	20710137	0.66	[{'connected_gene': 'IFT88', 'score': 29.57}, {'connected_gene': 'XPO4', 'score': 11.59}, {'connected_gene': 'EEF1AKMT1', 'score': 11.46}, {'connected_gene': 'SLC35E1P1', 'score': 11.17}, {'connected_gene': 'CRYL1', 'score': 10.83}, {'connected_gene': 'ENSG00000279135', 'score': 0.77}, {'connected_gene': 'GC13M020702', 'score': 0.44}, {'connected_gene': 'IL17D', 'score': 0.44}, {'connected_gene': 'ENSG00000278291', 'score': 0.44}]
chr13	GH13I020882	20882283	20883311	0.8	[{'connected_gene': 'IFT88', 'score': 13.29}, {'connected_gene': 'GC13P020892', 'score': 0.44}, {'connected_gene': 'XPO4', 'score': 0.34}, {'connected_gene': 'EEF1AKMT1', 'score': 0.14}]
chr13	GH13I020565	20565828	20568755	2.02	[{'connected_gene': 'IFT88', 'score': 571.7}, {'connected_gene': 'PIR57097', 'score': 550.77}, {'connected_gene': 'LOC105370103', 'score': 550.77}, {'connected_gene': 'SLC35E1P1', 'score': 19.96}, {'connected_gene': 'ZMYM2', 'score': 14.51}, {'connected_gene': 'XPO4', 'score': 13.63}, {'connected_gene': 'ZMYM5', 'score': 12.06}, {'connected_gene': 'CRYL1', 'score': 11.33}, {'connected_gene': 'IL17D', 'score': 4.88}]
chr13	GH13I019957	19957043	19962267	2.04	[{'connected_gene': 'ZMYM2', 'score': 573.18}, {'connected_gene': 'ZMYM5', 'score': 25.44}, {'connected_gene': 'XPO4', 'score': 16.32}, {'connected_gene': 'GC13P019979', 'score': 0.37}]
chr13	GH13I021343	21343523	21345912	0.72	[{'connected_gene': 'MIPEPP3', 'score': 7.71}, {'connected_gene': 'XPO4', 'score': 4.52}, {'connected_gene': 'LINC00539', 'score': 0.77}, {'connected_gene': 'GRK6P1', 'score': 0.31}]
chr13	GH13I020901	20901221	20903601	1.96	[{'connected_gene': 'XPO4', 'score': 550.77}, {'connected_gene': 'IFT88', 'score': 13.38}, {'connected_gene': 'GC13P020892', 'score': 0.39}]
chr13	GH13I020787	20787793	20789961	0.46	[{'connected_gene': 'XPO4', 'score': 10.84}, {'connected_gene': 'CRYL1', 'score': 5.61}, {'connected_gene': 'IL17D', 'score': 4.8}, {'connected_gene': 'EEF1AKMT1', 'score': 0.39}, {'connected_gene': 'GC13P020892', 'score': 0.15}]
chr13	GH13I020506	20506122	20506271	0.67	[{'connected_gene': 'XPO4', 'score': 10.59}, {'connected_gene': 'CRYL1', 'score': 0.37}, {'connected_gene': 'MIR4499', 'score': 0.19}]
chr13	GH13I020843	20843302	20843471	0.2	[{'connected_gene': 'XPO4', 'score': 12.11}, {'connected_gene': 'GC13P020892', 'score': 0.25}, {'connected_gene': 'EEF1AKMT1', 'score': 0.2}]
chr13	GH13I020945	20945801	20946600	0.38	[{'connected_gene': 'XPO4', 'score': 11.86}, {'connected_gene': 'LATS2-AS1', 'score': 11.52}, {'connected_gene': 'HNRNPA1P30', 'score': 7.98}, {'connected_gene': 'LINC00367', 'score': 0.77}, {'connected_gene': 'CNOT4P1', 'score': 0.34}]
chr13	GH13I020942	20942963	20944251	1.3	[{'connected_gene': 'XPO4', 'score': 11.86}, {'connected_gene': 'LATS2-AS1', 'score': 11.5}, {'connected_gene': 'LATS2', 'score': 1.35}, {'connected_gene': 'HNRNPA1P30', 'score': 0.44}, {'connected_gene': 'LINC00367', 'score': 0.44}, {'connected_gene': 'CNOT4P1', 'score': 0.34}]
chr13	GH13I020130	20130281	20130659	0.58	[{'connected_gene': 'MPHOSPH8', 'score': 13.41}, {'connected_gene': 'ZMYM5', 'score': 12.94}, {'connected_gene': 'XPO4', 'score': 9.87}, {'connected_gene': 'EEF1AKMT1', 'score': 9.73}, {'connected_gene': 'LOC105370101', 'score': 0.39}, {'connected_gene': 'GJA3', 'score': 0.29}]
chr13	GH13I020716	20716673	20718741	0.43	[{'connected_gene': 'CRYL1', 'score': 15.33}, {'connected_gene': 'IFT88', 'score': 13.38}, {'connected_gene': 'EEF1AKMT1', 'score': 11.64}, {'connected_gene': 'XPO4', 'score': 11.59}, {'connected_gene': 'ENSG00000279135', 'score': 0.44}, {'connected_gene': 'GC13M020722', 'score': 0.44}, {'connected_gene': 'IL17D', 'score': 0.37}]
chr13	GH13I020159	20159902	20161855	2.12	[{'connected_gene': 'GJA3', 'score': 555.42}, {'connected_gene': 'ZMYM2', 'score': 16.16}, {'connected_gene': 'ZMYM5', 'score': 13.76}, {'connected_gene': 'XPO4', 'score': 12.34}, {'connected_gene': 'PSPC1', 'score': 2.1}, {'connected_gene': 'LOC105370101', 'score': 0.26}]
chr13	GH13I020772	20772299	20774571	1.99	[{'connected_gene': 'EEF1AKMT1', 'score': 556.84}, {'connected_gene': 'ZMYM5', 'score': 14.61}, {'connected_gene': 'SLC35E1P1', 'score': 14.31}, {'connected_gene': 'RNU2-7P', 'score': 11.96}, {'connected_gene': 'RPS7P10', 'score': 10.83}, {'connected_gene': 'IFT88', 'score': 10.69}, {'connected_gene': 'ZMYM2', 'score': 10.18}, {'connected_gene': 'CRYL1', 'score': 5.54}, {'connected_gene': 'XPO4', 'score': 5.17}, {'connected_gene': 'ENSG00000275485', 'score': 0.77}]
chr13	GH13I020812	20812984	20815943	1.29	[{'connected_gene': 'EEF1AKMT1', 'score': 18.43}, {'connected_gene': 'IFT88', 'score': 12.57}, {'connected_gene': 'GC13P020892', 'score': 0.18}, {'connected_gene': 'XPO4', 'score': 0.17}]
chr13	GH13I020730	20730486	20730839	0.22	[{'connected_gene': 'EEF1AKMT1', 'score': 12.11}, {'connected_gene': 'IL17D', 'score': 10.45}, {'connected_gene': 'CRYL1', 'score': 10.39}, {'connected_gene': 'XPO4', 'score': 5.88}, {'connected_gene': 'IFT88', 'score': 4.92}, {'connected_gene': 'GC13M020722', 'score': 0.44}, {'connected_gene': 'RANP8', 'score': 0.37}]
chr13	GH13I020822	20822940	20826336	0.7	[{'connected_gene': 'EEF1AKMT1', 'score': 18.47}, {'connected_gene': 'CRYL1', 'score': 15.11}, {'connected_gene': 'SLC35E1P1', 'score': 13.32}, {'connected_gene': 'IFT88', 'score': 12.19}, {'connected_gene': 'IL17D', 'score': 10.22}, {'connected_gene': 'GC13P020892', 'score': 0.2}, {'connected_gene': 'XPO4', 'score': 0.18}]
chr13	GH13I020800	20800862	20802548	0.75	[{'connected_gene': 'EEF1AKMT1', 'score': 12.08}, {'connected_gene': 'CRYL1', 'score': 10.0}, {'connected_gene': 'XPO4', 'score': 5.64}, {'connected_gene': 'IFT88', 'score': 4.61}, {'connected_gene': 'GC13P020892', 'score': 0.16}]
chr13	GH13I020797	20797193	20798671	0.66	[{'connected_gene': 'EEF1AKMT1', 'score': 16.91}, {'connected_gene': 'CRYL1', 'score': 15.62}, {'connected_gene': 'XPO4', 'score': 11.85}, {'connected_gene': 'GC13P020892', 'score': 0.16}]
chr13	GH13I020828	20828401	20829000	1.04	[{'connected_gene': 'EEF1AKMT1', 'score': 11.06}, {'connected_gene': 'CRYL1', 'score': 10.47}, {'connected_gene': 'GC13P020892', 'score': 0.21}, {'connected_gene': 'XPO4', 'score': 0.19}]
chr13	GH13I020823	20822522	20822671	0.2	[{'connected_gene': 'EEF1AKMT1', 'score': 11.47}, {'connected_gene': 'CRYL1', 'score': 9.34}, {'connected_gene': 'GC13P020892', 'score': 0.2}, {'connected_gene': 'XPO4', 'score': 0.18}]
chr13	GH13I020826	20826816	20827507	0.31	[{'connected_gene': 'EEF1AKMT1', 'score': 11.06}, {'connected_gene': 'CRYL1', 'score': 10.47}, {'connected_gene': 'IL17D', 'score': 10.22}, {'connected_gene': 'GC13P020892', 'score': 0.2}, {'connected_gene': 'XPO4', 'score': 0.18}]
chr13	GH13I020118	20118001	20121841	1.49	[{'connected_gene': 'LOC105370101', 'score': 550.77}, {'connected_gene': 'ZMYM5', 'score': 15.52}, {'connected_gene': 'ZMYM2', 'score': 15.23}, {'connected_gene': 'XPO4', 'score': 13.53}, {'connected_gene': 'MPHOSPH8', 'score': 11.1}, {'connected_gene': 'RNU2-7P', 'score': 9.68}, {'connected_gene': 'GJA3', 'score': 8.34}, {'connected_gene': 'PSPC1', 'score': 6.16}, {'connected_gene': 'CRYL1', 'score': 3.06}, {'connected_gene': 'LINC01072', 'score': 0.37}]
chr13	GH13I020924	20924922	20925071	0.62	[{'connected_gene': 'CNOT4P1', 'score': 550.77}, {'connected_gene': 'XPO4', 'score': 12.1}, {'connected_gene': 'LINC00367', 'score': 0.34}]
chr13	GH13I021241	21241828	21244103	0.52	[{'connected_gene': 'RPS7P10', 'score': 11.4}, {'connected_gene': 'XPO4', 'score': 9.89}, {'connected_gene': 'LINC01046', 'score': 0.44}, {'connected_gene': 'ESRRAP2', 'score': 0.37}]
chr13	GH13I020712	20712551	20716039	1.03	[{'connected_gene': 'ENSG00000279135', 'score': 550.77}, {'connected_gene': 'SLC35E1P1', 'score': 12.5}, {'connected_gene': 'IFT88', 'score': 11.88}, {'connected_gene': 'XPO4', 'score': 11.59}, {'connected_gene': 'EEF1AKMT1', 'score': 11.47}, {'connected_gene': 'CRYL1', 'score': 9.99}, {'connected_gene': 'GC13M020722', 'score': 0.44}, {'connected_gene': 'IL17D', 'score': 0.39}]