PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000356284	[[168841830, 168842134], [168910594, 168910766], [168927025, 168927132], [168928307, 168928407], [168944304, 168944352], [168947798, 168947849], [168949808, 168949883], [168999497, 168999684], [169008836, 169008919], [169051360, 169051463], [169053633, 169053908], [169064753, 169064791], [169067100, 169068674]]	[[168842050, 168842134], [168910594, 168910766], [168927025, 168927132], [168928307, 168928407], [168944304, 168944352], [168947798, 168947849], [168949808, 168949883], [168999497, 168999684], [169008836, 169008919], [169051360, 169051463], [169053633, 169053908], [169064753, 169064791], [169067100, 169067118]]
ENST00000354536	[[168841830, 168842134], [168910594, 168910766], [168927025, 168927132], [168928307, 168928407], [168944304, 168944352], [168947765, 168947849], [168949808, 168949883], [168999497, 168999684], [169008836, 169008919], [169051360, 169051463], [169053633, 169053908], [169064753, 169064791], [169067100, 169068674]]	[[168842050, 168842134], [168910594, 168910766], [168927025, 168927132], [168928307, 168928407], [168944304, 168944352], [168947765, 168947849], [168949808, 168949883], [168999497, 168999684], [169008836, 169008919], [169051360, 169051463], [169053633, 169053908], [169064753, 169064791], [169067100, 169067118]]
ENST00000392100	[[169053724, 169053908], [169056075, 169056170], [169064753, 169064791], [169067100, 169067183]]	[[169053724, 169053908], [169056075, 169056095]]
ENST00000417208	[[169053763, 169053908], [169064753, 169064791], [169065415, 169065904]]	[[169053763, 169053908], [169064753, 169064791], [169065415, 169065487]]
ENST00000477998	[[169053882, 169053908], [169064753, 169064791], [169072921, 169072986], [169073751, 169073984]]	None
NM_001166412	[[168841830, 168842134], [168910594, 168910766], [168927025, 168927132], [168928307, 168928407], [168944304, 168944352], [168947798, 168947849], [168949808, 168949883], [168999497, 168999684], [169008836, 169008919], [169051360, 169051463], [169053633, 169053908], [169064753, 169064791], [169067100, 169068674]]	[[168842050, 168842134], [168910594, 168910766], [168927025, 168927132], [168928307, 168928407], [168944304, 168944352], [168947798, 168947849], [168949808, 168949883], [168999497, 168999684], [169008836, 169008919], [169051360, 169051463], [169053633, 169053908], [169064753, 169064791], [169067100, 169067118]]
NM_022138	[[168841830, 168842134], [168910594, 168910766], [168927025, 168927132], [168928307, 168928407], [168944304, 168944352], [168947765, 168947849], [168949808, 168949883], [168999497, 168999684], [169008836, 169008919], [169051360, 169051463], [169053633, 169053908], [169064753, 169064791], [169067100, 169068674]]	[[168842050, 168842134], [168910594, 168910766], [168927025, 168927132], [168928307, 168928407], [168944304, 168944352], [168947765, 168947849], [168949808, 168949883], [168999497, 168999684], [169008836, 169008919], [169051360, 169051463], [169053633, 169053908], [169064753, 169064791], [169067100, 169067118]]

Promoter

Chrom	Start	End	Description
chr6	168841817	168841848	CAGE_peak_2_at_SMOC2_5end
chr6	168841853	168841874	CAGE_peak_1_at_SMOC2_5end
chr6	168841898	168841909	CAGE_peak_3_at_SMOC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I168563	168563434	168565761	0.46	[{'connected_gene': 'SMOC2', 'score': 6.32}, {'connected_gene': 'LINC01558', 'score': 4.89}, {'connected_gene': 'GC06M168474', 'score': 0.18}, {'connected_gene': 'LOC105378142', 'score': 0.12}]
chr6	GH06I168569	168569567	168571721	0.2	[{'connected_gene': 'SMOC2', 'score': 5.46}, {'connected_gene': 'LINC01558', 'score': 5.27}, {'connected_gene': 'GC06M168474', 'score': 0.17}, {'connected_gene': 'LOC105378142', 'score': 0.13}]
chr6	GH06I168574	168574296	168576200	0.69	[{'connected_gene': 'SMOC2', 'score': 5.87}, {'connected_gene': 'LINC01558', 'score': 5.26}, {'connected_gene': 'GC06M168474', 'score': 0.16}, {'connected_gene': 'LOC105378142', 'score': 0.13}]
chr6	GH06I168666	168666364	168667833	0.2	[{'connected_gene': 'SMOC2', 'score': 10.7}, {'connected_gene': 'LOC105378142', 'score': 0.31}, {'connected_gene': 'GC06M168474', 'score': 0.09}]
chr6	GH06I168540	168540821	168542739	0.66	[{'connected_gene': 'SMOC2', 'score': 4.93}, {'connected_gene': 'GC06M168474', 'score': 0.22}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168607	168607876	168608631	0.4	[{'connected_gene': 'SMOC2', 'score': 14.85}, {'connected_gene': 'LOC105378142', 'score': 0.17}, {'connected_gene': 'GC06M168474', 'score': 0.13}]
chr6	GH06I168532	168532169	168532445	0.2	[{'connected_gene': 'SMOC2', 'score': 4.68}, {'connected_gene': 'GC06M168474', 'score': 0.25}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168516	168516386	168517736	0.2	[{'connected_gene': 'SMOC2', 'score': 5.9}, {'connected_gene': 'GC06M168474', 'score': 0.29}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168525	168525986	168528030	0.51	[{'connected_gene': 'SMOC2', 'score': 16.74}, {'connected_gene': 'GC06M168474', 'score': 0.26}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168515	168515271	168515633	0.2	[{'connected_gene': 'SMOC2', 'score': 5.37}, {'connected_gene': 'GC06M168474', 'score': 0.29}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168544	168544679	168547331	0.43	[{'connected_gene': 'SMOC2', 'score': 10.77}, {'connected_gene': 'GC06M168474', 'score': 0.21}, {'connected_gene': 'LOC105378142', 'score': 0.11}]
chr6	GH06I168553	168553615	168555559	0.31	[{'connected_gene': 'SMOC2', 'score': 11.14}, {'connected_gene': 'GC06M168474', 'score': 0.19}, {'connected_gene': 'LOC105378142', 'score': 0.11}]
chr6	GH06I168617	168617021	168617170	0.63	[{'connected_gene': 'SMOC2', 'score': 7.15}, {'connected_gene': 'LOC105378142', 'score': 0.18}, {'connected_gene': 'GC06M168474', 'score': 0.12}]
chr6	GH06I168622	168622334	168623538	0.2	[{'connected_gene': 'SMOC2', 'score': 7.62}, {'connected_gene': 'LOC105378142', 'score': 0.19}, {'connected_gene': 'GC06M168474', 'score': 0.12}]
chr6	GH06I168639	168639785	168641802	0.4	[{'connected_gene': 'SMOC2', 'score': 10.89}, {'connected_gene': 'LOC105378142', 'score': 0.23}, {'connected_gene': 'GC06M168474', 'score': 0.1}]
chr6	GH06I168535	168535568	168537420	0.2	[{'connected_gene': 'SMOC2', 'score': 5.52}, {'connected_gene': 'GC06M168474', 'score': 0.23}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168579	168579701	168580052	0.2	[{'connected_gene': 'SMOC2', 'score': 5.47}, {'connected_gene': 'GC06M168474', 'score': 0.15}, {'connected_gene': 'LOC105378142', 'score': 0.13}]
chr6	GH06I168524	168524073	168525538	0.63	[{'connected_gene': 'SMOC2', 'score': 5.31}, {'connected_gene': 'GC06M168474', 'score': 0.26}, {'connected_gene': 'LOC105378142', 'score': 0.09}]
chr6	GH06I168438	168438910	168443247	1.34	[{'connected_gene': 'SMOC2', 'score': 550.77}, {'connected_gene': 'LOC105378141', 'score': 0.31}]
chr6	GH06I168414	168414803	168416014	0.2	[{'connected_gene': 'SMOC2', 'score': 20.09}, {'connected_gene': 'LOC105378141', 'score': 0.77}]
chr6	GH06I168417	168417159	168418939	0.43	[{'connected_gene': 'SMOC2', 'score': 25.48}, {'connected_gene': 'LOC105378141', 'score': 0.77}]
chr6	GH06I168400	168400021	168400170	0.2	[{'connected_gene': 'SMOC2', 'score': 11.45}, {'connected_gene': 'LOC105378140', 'score': 0.39}, {'connected_gene': 'ENSG00000260771', 'score': 0.31}]
chr6	GH06I168376	168376989	168378690	0.2	[{'connected_gene': 'SMOC2', 'score': 9.78}, {'connected_gene': 'ENSG00000260771', 'score': 0.77}, {'connected_gene': 'LOC105378140', 'score': 0.28}]
chr6	GH06I168247	168247261	168248250	0.89	[{'connected_gene': 'SMOC2', 'score': 10.26}, {'connected_gene': 'LOC101929420', 'score': 0.77}, {'connected_gene': 'CTAGE13P', 'score': 0.26}]
chr6	GH06I168466	168466661	168466810	0.2	[{'connected_gene': 'SMOC2', 'score': 7.16}, {'connected_gene': 'GC06P168474', 'score': 0.44}]
chr6	GH06I168451	168451921	168452070	0.38	[{'connected_gene': 'SMOC2', 'score': 0.39}, {'connected_gene': 'GC06P168474', 'score': 0.34}]
chr6	GH06I167685	167684961	167685110	0.31	[{'connected_gene': 'LINC02487', 'score': 550.77}, {'connected_gene': 'LINC01558', 'score': 10.29}, {'connected_gene': 'SMOC2', 'score': 4.53}, {'connected_gene': 'LOC105378132', 'score': 0.39}]
chr6	GH06I168545	168544024	168544267	0.31	[{'connected_gene': 'LINC02519', 'score': 16.98}, {'connected_gene': 'ENSG00000272848', 'score': 15.93}, {'connected_gene': 'AFDN-DT', 'score': 12.81}, {'connected_gene': 'GC06M168474', 'score': 0.21}, {'connected_gene': 'SMOC2', 'score': 0.15}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168659	168659409	168660487	0.62	[{'connected_gene': 'LINC02519', 'score': 33.03}, {'connected_gene': 'ENSG00000272848', 'score': 21.11}, {'connected_gene': 'AFDN-DT', 'score': 10.96}, {'connected_gene': 'AFDN', 'score': 10.22}, {'connected_gene': 'LOC105378142', 'score': 0.28}, {'connected_gene': 'GC06M168474', 'score': 0.1}, {'connected_gene': 'SMOC2', 'score': 0.08}]
chr6	GH06I168648	168648195	168649534	0.76	[{'connected_gene': 'LOC105378142', 'score': 0.25}, {'connected_gene': 'GC06M168474', 'score': 0.1}, {'connected_gene': 'SMOC2', 'score': 0.08}]
chr6	GH06I168634	168634259	168635502	0.51	[{'connected_gene': 'LOC105378142', 'score': 0.21}, {'connected_gene': 'GC06M168474', 'score': 0.1}, {'connected_gene': 'SMOC2', 'score': 0.08}]
chr6	GH06I168637	168637225	168639535	0.86	[{'connected_gene': 'LOC105378142', 'score': 0.22}, {'connected_gene': 'GC06M168474', 'score': 0.1}, {'connected_gene': 'SMOC2', 'score': 0.08}]
chr6	GH06I168610	168610038	168610170	0.63	[{'connected_gene': 'LOC105378142', 'score': 0.18}, {'connected_gene': 'GC06M168474', 'score': 0.13}, {'connected_gene': 'SMOC2', 'score': 0.1}]
chr6	GH06I168625	168625210	168626894	0.4	[{'connected_gene': 'LOC105378142', 'score': 0.2}, {'connected_gene': 'GC06M168474', 'score': 0.11}, {'connected_gene': 'SMOC2', 'score': 0.09}]
chr6	GH06I168650	168650761	168650910	0.4	[{'connected_gene': 'LOC105378142', 'score': 0.26}, {'connected_gene': 'GC06M168474', 'score': 0.1}, {'connected_gene': 'SMOC2', 'score': 0.08}]
chr6	GH06I168672	168672262	168672411	0.2	[{'connected_gene': 'LOC105378142', 'score': 0.34}, {'connected_gene': 'GC06M168474', 'score': 0.09}, {'connected_gene': 'SMOC2', 'score': 0.07}]
chr6	GH06I168597	168597521	168597710	0.43	[{'connected_gene': 'LOC105378142', 'score': 0.15}, {'connected_gene': 'GC06M168474', 'score': 0.14}, {'connected_gene': 'SMOC2', 'score': 0.1}]
chr6	GH06I168415	168413344	168413778	0.69	[{'connected_gene': 'LOC105378141', 'score': 550.77}, {'connected_gene': 'LOC105378140', 'score': 550.77}, {'connected_gene': 'SMOC2', 'score': 25.73}]
chr6	GH06I168413	168413893	168414055	0.38	[{'connected_gene': 'LOC105378141', 'score': 550.77}, {'connected_gene': 'LOC105378140', 'score': 550.77}, {'connected_gene': 'SMOC2', 'score': 24.62}]
chr6	GH06I168332	168332919	168334750	0.62	[{'connected_gene': 'LOC105378139', 'score': 550.77}, {'connected_gene': 'DACT2', 'score': 20.92}, {'connected_gene': 'SMOC2', 'score': 11.01}]
chr6	GH06I169219	169219560	169222129	0.46	[{'connected_gene': 'LOC101929523', 'score': 10.15}, {'connected_gene': 'THBS2', 'score': 5.77}, {'connected_gene': 'SMOC2', 'score': 4.58}]
chr6	GH06I168533	168533511	168534075	0.4	[{'connected_gene': 'GC06M168474', 'score': 0.23}, {'connected_gene': 'SMOC2', 'score': 0.16}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168513	168513747	168514770	0.49	[{'connected_gene': 'GC06M168474', 'score': 0.29}, {'connected_gene': 'SMOC2', 'score': 0.19}, {'connected_gene': 'LOC105378142', 'score': 0.09}]
chr6	GH06I168562	168562386	168563111	0.46	[{'connected_gene': 'GC06M168474', 'score': 0.18}, {'connected_gene': 'SMOC2', 'score': 0.13}, {'connected_gene': 'LOC105378142', 'score': 0.12}]
chr6	GH06I168498	168498141	168498290	0.31	[{'connected_gene': 'GC06M168474', 'score': 0.39}, {'connected_gene': 'SMOC2', 'score': 0.22}, {'connected_gene': 'LOC105378142', 'score': 0.08}]
chr6	GH06I168534	168534348	168534545	0.2	[{'connected_gene': 'GC06M168474', 'score': 0.23}, {'connected_gene': 'SMOC2', 'score': 0.16}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168531	168531509	168531773	0.2	[{'connected_gene': 'GC06M168474', 'score': 0.25}, {'connected_gene': 'SMOC2', 'score': 0.16}, {'connected_gene': 'LOC105378142', 'score': 0.1}]
chr6	GH06I168578	168578884	168579121	0.2	[{'connected_gene': 'GC06M168474', 'score': 0.15}, {'connected_gene': 'LOC105378142', 'score': 0.13}, {'connected_gene': 'SMOC2', 'score': 0.12}]
chr6	GH06I168582	168582522	168585269	0.4	[{'connected_gene': 'GC06M168474', 'score': 0.15}, {'connected_gene': 'LOC105378142', 'score': 0.14}, {'connected_gene': 'SMOC2', 'score': 0.11}]