PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000495362	[[119355303, 119355363], [119361212, 119361399]]	[[119361322, 119361399]]
ENST00000341124	[[119360904, 119361408], [119362213, 119362296], [119366965, 119367515], [119373351, 119373460], [119378779, 119379491]]	[[119367008, 119367515], [119373351, 119373460], [119378779, 119379270]]
ENST00000264231	[[119360905, 119361408], [119367106, 119367515], [119373351, 119373460], [119378779, 119379437]]	[[119361322, 119361408], [119367106, 119367515], [119373351, 119373460], [119378779, 119379270]]
ENST00000474523	[[119360905, 119361408], [119362213, 119362296], [119367106, 119367515], [119373351, 119373460], [119378779, 119378910], [119384097, 119384171]]	None
ENST00000493094	[[119361181, 119361408], [119366965, 119367515], [119373351, 119373460], [119378779, 119379730]]	[[119367008, 119367515], [119373351, 119373460], [119378779, 119379270]]
ENST00000468801	[[119361322, 119361408], [119362213, 119362296], [119367106, 119367515], [119373351, 119373460], [119378779, 119379437]]	[[119362222, 119362296], [119367106, 119367515], [119373351, 119373460], [119378779, 119379270]]
ENST00000538678	[[119362222, 119362296], [119367106, 119367515], [119373351, 119373460], [119378779, 119379437]]	[[119362222, 119362296], [119367106, 119367515], [119373351, 119373460], [119378779, 119379270]]
ENST00000468916	[[119367224, 119367515], [119378779, 119379434]]	None
ENST00000476092	[[119367246, 119367515], [119373351, 119373574]]	None
ENST00000463323	[[119367287, 119367515], [119373351, 119373460], [119378779, 119378910], [119379366, 119379432]]	None
NM_001308333	[[119360898, 119361408], [119362213, 119362296], [119367106, 119367515], [119373351, 119373460], [119378779, 119379437]]	[[119362222, 119362296], [119367106, 119367515], [119373351, 119373460], [119378779, 119379270]]
NM_022135	[[119360898, 119361408], [119367106, 119367515], [119373351, 119373460], [119378779, 119379437]]	[[119361322, 119361408], [119367106, 119367515], [119373351, 119373460], [119378779, 119379270]]

Promoter

Chrom	Start	End	Description
chr3	119379427	119379442	CAGE_peak_1_at_POPDC2_5end
chr3	119379472	119379475	CAGE_peak_6_at_POPDC2_5end
chr3	119379719	119379737	CAGE_peak_2_at_POPDC2_5end
chr3	119379740	119379743	CAGE_peak_5_at_POPDC2_5end
chr3	119379772	119379779	CAGE_peak_3_at_POPDC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I119655	119655442	119656140	0.2	[{'connected_gene': 'CD80', 'score': 10.86}, {'connected_gene': 'MAATS1', 'score': 4.78}, {'connected_gene': 'PLA1A', 'score': 4.45}, {'connected_gene': 'POPDC2', 'score': 0.44}, {'connected_gene': 'RPL10P7', 'score': 0.37}, {'connected_gene': 'COX17', 'score': 0.34}]
chr3	GH03I119620	119620558	119622234	0.2	[{'connected_gene': 'CD80', 'score': 16.38}, {'connected_gene': 'PLA1A', 'score': 12.88}, {'connected_gene': 'POPDC2', 'score': 11.91}, {'connected_gene': 'ADPRH', 'score': 11.42}, {'connected_gene': 'COX17', 'score': 7.18}, {'connected_gene': 'GC03M119637', 'score': 0.39}, {'connected_gene': 'LOC105374062', 'score': 0.37}]
chr3	GH03I119570	119570001	119571999	1.3	[{'connected_gene': 'CD80', 'score': 19.97}, {'connected_gene': 'PLA1A', 'score': 12.4}, {'connected_gene': 'ARHGAP31', 'score': 12.16}, {'connected_gene': 'ADPRH', 'score': 11.85}, {'connected_gene': 'POPDC2', 'score': 10.64}, {'connected_gene': 'POGLUT1', 'score': 9.71}, {'connected_gene': 'TMEM39A', 'score': 9.71}, {'connected_gene': 'COX17', 'score': 2.25}]
chr3	GH03I119618	119618766	119620444	0.38	[{'connected_gene': 'CD80', 'score': 19.32}, {'connected_gene': 'ADPRH', 'score': 17.46}, {'connected_gene': 'PLA1A', 'score': 12.88}, {'connected_gene': 'POPDC2', 'score': 11.89}, {'connected_gene': 'COX17', 'score': 7.9}, {'connected_gene': 'POGLUT1', 'score': 6.41}, {'connected_gene': 'LOC105374062', 'score': 0.39}, {'connected_gene': 'GC03M119637', 'score': 0.37}]
chr3	GH03I119651	119651738	119652872	0.51	[{'connected_gene': 'MAATS1', 'score': 19.31}, {'connected_gene': 'ADPRH', 'score': 11.62}, {'connected_gene': 'CD80', 'score': 10.71}, {'connected_gene': 'RPL10P7', 'score': 5.18}, {'connected_gene': 'POPDC2', 'score': 0.39}]
chr3	GH03I119659	119659128	119663853	1.5	[{'connected_gene': 'POPDC2', 'score': 571.71}, {'connected_gene': 'RPL10P7', 'score': 13.77}, {'connected_gene': 'CD80', 'score': 10.14}, {'connected_gene': 'MAATS1', 'score': 9.85}, {'connected_gene': 'ARHGAP31', 'score': 6.01}, {'connected_gene': 'PLA1A', 'score': 4.44}, {'connected_gene': 'COX17', 'score': 0.37}]
chr3	GH03I119646	119646750	119648400	0.6	[{'connected_gene': 'POPDC2', 'score': 21.21}, {'connected_gene': 'RPL10P7', 'score': 16.52}, {'connected_gene': 'ADPRH', 'score': 5.76}]
chr3	GH03I119664	119664000	119665800	1.09	[{'connected_gene': 'POPDC2', 'score': 560.43}, {'connected_gene': 'LOC105374063', 'score': 550.77}, {'connected_gene': 'MAATS1', 'score': 9.39}, {'connected_gene': 'RPL10P7', 'score': 5.02}, {'connected_gene': 'COX17', 'score': 0.39}]
chr3	GH03I119656	119656194	119658738	0.54	[{'connected_gene': 'POPDC2', 'score': 21.68}, {'connected_gene': 'COX17', 'score': 18.32}, {'connected_gene': 'CD80', 'score': 10.86}, {'connected_gene': 'MAATS1', 'score': 9.84}, {'connected_gene': 'ADPRH', 'score': 5.1}, {'connected_gene': 'RPL10P7', 'score': 5.05}, {'connected_gene': 'PLA1A', 'score': 4.26}]
chr3	GH03I119497	119497379	119501067	2.05	[{'connected_gene': 'TIMMDC1', 'score': 556.72}, {'connected_gene': 'PIR33513', 'score': 550.77}, {'connected_gene': 'GC03P119501', 'score': 550.77}, {'connected_gene': 'ENSG00000272662', 'score': 550.77}, {'connected_gene': 'POGLUT1', 'score': 39.23}, {'connected_gene': 'CD80', 'score': 11.47}, {'connected_gene': 'TMEM39A', 'score': 11.32}, {'connected_gene': 'ADPRH', 'score': 10.97}, {'connected_gene': 'POPDC2', 'score': 10.54}, {'connected_gene': 'MAATS1', 'score': 9.67}, {'connected_gene': 'IGSF11', 'score': 3.96}, {'connected_gene': 'CSRP2P1', 'score': 0.29}]
chr3	GH03I119644	119644938	119645423	0.31	[{'connected_gene': 'RPL10P7', 'score': 13.5}, {'connected_gene': 'POPDC2', 'score': 0.34}]
chr3	GH03I119645	119645934	119646083	0.84	[{'connected_gene': 'RPL10P7', 'score': 14.12}, {'connected_gene': 'POPDC2', 'score': 0.37}]
chr3	GH03I119652	119651068	119651376	0.61	[{'connected_gene': 'RPL10P7', 'score': 15.02}, {'connected_gene': 'ADPRH', 'score': 11.62}, {'connected_gene': 'CD80', 'score': 10.71}, {'connected_gene': 'MAATS1', 'score': 10.2}, {'connected_gene': 'NR1I2', 'score': 7.26}, {'connected_gene': 'POPDC2', 'score': 0.39}]
chr3	GH03I119635	119635913	119640405	1.77	[{'connected_gene': 'RPL10P7', 'score': 566.9}, {'connected_gene': 'ADPRH', 'score': 16.22}, {'connected_gene': 'COX17', 'score': 12.37}, {'connected_gene': 'ARHGAP31', 'score': 11.64}, {'connected_gene': 'MAATS1', 'score': 9.8}, {'connected_gene': 'PLA1A', 'score': 4.5}, {'connected_gene': 'GSK3B', 'score': 2.07}, {'connected_gene': 'GC03M119637', 'score': 0.77}, {'connected_gene': 'POPDC2', 'score': 0.31}]
chr3	GH03I119642	119642552	119644797	1.07	[{'connected_gene': 'RPL10P7', 'score': 16.56}, {'connected_gene': 'COX17', 'score': 13.97}, {'connected_gene': 'ADPRH', 'score': 5.78}, {'connected_gene': 'POPDC2', 'score': 0.34}]
chr3	GH03I119649	119649987	119650358	0.75	[{'connected_gene': 'ADPRH', 'score': 17.06}, {'connected_gene': 'CD80', 'score': 10.71}, {'connected_gene': 'MAATS1', 'score': 10.2}, {'connected_gene': 'NR1I2', 'score': 1.72}, {'connected_gene': 'RPL10P7', 'score': 0.39}, {'connected_gene': 'POPDC2', 'score': 0.37}]
chr3	GH03I119626	119626787	119631999	1.5	[{'connected_gene': 'ADPRH', 'score': 32.83}, {'connected_gene': 'MAATS1', 'score': 19.08}, {'connected_gene': 'RPL10P7', 'score': 16.7}, {'connected_gene': 'COX17', 'score': 13.97}, {'connected_gene': 'CD80', 'score': 12.06}, {'connected_gene': 'POPDC2', 'score': 11.76}, {'connected_gene': 'ARHGAP31', 'score': 11.07}, {'connected_gene': 'PLA1A', 'score': 5.9}, {'connected_gene': 'GPR156', 'score': 5.1}, {'connected_gene': 'GSK3B', 'score': 1.98}, {'connected_gene': 'GC03M119637', 'score': 0.44}, {'connected_gene': 'LOC105374062', 'score': 0.34}]
chr3	GH03I119627	119626334	119626547	0.44	[{'connected_gene': 'ADPRH', 'score': 19.09}, {'connected_gene': 'POPDC2', 'score': 11.76}, {'connected_gene': 'CD80', 'score': 10.96}, {'connected_gene': 'MAATS1', 'score': 9.77}, {'connected_gene': 'PLA1A', 'score': 5.57}, {'connected_gene': 'ARHGAP31', 'score': 5.12}, {'connected_gene': 'GSK3B', 'score': 1.45}, {'connected_gene': 'GC03M119637', 'score': 0.44}, {'connected_gene': 'LOC105374062', 'score': 0.34}]
chr3	GH03I119612	119612368	119617120	0.31	[{'connected_gene': 'ADPRH', 'score': 24.93}, {'connected_gene': 'POPDC2', 'score': 11.88}, {'connected_gene': 'CD80', 'score': 11.4}, {'connected_gene': 'COX17', 'score': 7.53}, {'connected_gene': 'RPL10P7', 'score': 5.87}, {'connected_gene': 'GPR156', 'score': 5.68}, {'connected_gene': 'LOC105374062', 'score': 0.44}, {'connected_gene': 'PLA1A', 'score': 0.37}, {'connected_gene': 'GC03M119637', 'score': 0.34}]
chr3	GH03I119675	119675594	119678214	2.23	[{'connected_gene': 'COX17', 'score': 565.02}, {'connected_gene': 'MAATS1', 'score': 20.23}, {'connected_gene': 'POPDC2', 'score': 12.21}, {'connected_gene': 'CD80', 'score': 11.0}, {'connected_gene': 'LOC105374063', 'score': 0.39}]
chr3	GH03I119654	119653180	119653499	0.2	[{'connected_gene': 'COX17', 'score': 11.81}, {'connected_gene': 'ADPRH', 'score': 11.62}, {'connected_gene': 'CD80', 'score': 10.71}, {'connected_gene': 'MAATS1', 'score': 10.21}, {'connected_gene': 'POPDC2', 'score': 0.39}, {'connected_gene': 'RPL10P7', 'score': 0.37}]
chr3	GH03I119653	119653655	119655195	0.2	[{'connected_gene': 'COX17', 'score': 18.29}, {'connected_gene': 'ADPRH', 'score': 11.61}, {'connected_gene': 'CD80', 'score': 10.86}, {'connected_gene': 'MAATS1', 'score': 10.21}, {'connected_gene': 'PLA1A', 'score': 4.46}, {'connected_gene': 'POPDC2', 'score': 0.39}, {'connected_gene': 'RPL10P7', 'score': 0.37}]