PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000265070	[[32124809, 32126742], [32135677, 32135792], [32143854, 32143986], [32173915, 32174456]]	[[32126317, 32126742], [32135677, 32135792], [32143854, 32143986], [32173915, 32174140]]
ENST00000503610	[[32126472, 32126742], [32135677, 32135792], [32143854, 32143986], [32173851, 32174408]]	[[32173858, 32174140]]
ENST00000512668	[[32126700, 32126742], [32135677, 32135792], [32173915, 32174423]]	None
NM_022130	[[32124823, 32126742], [32135677, 32135792], [32143854, 32143986], [32173915, 32174425]]	[[32126317, 32126742], [32135677, 32135792], [32143854, 32143986], [32173915, 32174140]]

Promoter

Chrom	Start	End	Description
chr5	32174283	32174295	CAGE_peak_3_at_GOLPH3_5end
chr5	32174338	32174367	CAGE_peak_2_at_GOLPH3_5end
chr5	32174369	32174458	CAGE_peak_1_at_GOLPH3_5end
chr5	32174797	32174803	CAGE_peak_17_at_GOLPH3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I032209	32209990	32211700	1.05	[{'connected_gene': 'GOLPH3', 'score': 13.33}, {'connected_gene': 'MIR579', 'score': 11.0}, {'connected_gene': 'ZFR', 'score': 10.98}, {'connected_gene': 'MTMR12', 'score': 6.18}, {'connected_gene': 'RPL27P10', 'score': 5.07}, {'connected_gene': 'GC05P032207', 'score': 0.77}, {'connected_gene': 'PIR52245', 'score': 0.44}, {'connected_gene': 'GC05M032181', 'score': 0.21}]
chr5	GH05I032253	32253634	32254009	0.2	[{'connected_gene': 'GOLPH3', 'score': 10.95}, {'connected_gene': 'MIR579', 'score': 10.65}, {'connected_gene': 'ZFR', 'score': 10.63}, {'connected_gene': 'MTMR12', 'score': 9.23}, {'connected_gene': 'GC05P032258', 'score': 0.77}, {'connected_gene': 'PIR44669', 'score': 0.39}, {'connected_gene': 'GC05M032181', 'score': 0.37}]
chr5	GH05I032251	32251165	32251994	0.38	[{'connected_gene': 'GOLPH3', 'score': 10.95}, {'connected_gene': 'MIR579', 'score': 10.65}, {'connected_gene': 'ZFR', 'score': 10.63}, {'connected_gene': 'MTMR12', 'score': 9.26}, {'connected_gene': 'GC05P032258', 'score': 0.44}, {'connected_gene': 'PIR44669', 'score': 0.39}, {'connected_gene': 'GC05M032181', 'score': 0.34}]
chr5	GH05I032297	32297714	32298602	1.19	[{'connected_gene': 'GOLPH3', 'score': 10.94}, {'connected_gene': 'MIR579', 'score': 10.85}, {'connected_gene': 'ZFR', 'score': 10.81}, {'connected_gene': 'MTMR12', 'score': 7.7}, {'connected_gene': 'GC05P032310', 'score': 0.39}, {'connected_gene': 'GC05M032181', 'score': 0.31}]
chr5	GH05I032240	32240322	32243103	0.42	[{'connected_gene': 'GOLPH3', 'score': 11.36}, {'connected_gene': 'MIR579', 'score': 10.96}, {'connected_gene': 'ZFR', 'score': 10.93}, {'connected_gene': 'MTMR12', 'score': 7.33}, {'connected_gene': 'PIR44669', 'score': 0.77}, {'connected_gene': 'GC05P032258', 'score': 0.37}, {'connected_gene': 'GC05M032181', 'score': 0.29}]
chr5	GH05I032254	32254938	32256047	0.4	[{'connected_gene': 'GOLPH3', 'score': 10.94}, {'connected_gene': 'MIR579', 'score': 10.66}, {'connected_gene': 'ZFR', 'score': 10.63}, {'connected_gene': 'GC05P032258', 'score': 0.77}, {'connected_gene': 'GC05M032181', 'score': 0.37}, {'connected_gene': 'PIR44669', 'score': 0.37}, {'connected_gene': 'MTMR12', 'score': 0.22}]
chr5	GH05I032304	32304555	32305079	0.43	[{'connected_gene': 'GOLPH3', 'score': 11.01}, {'connected_gene': 'MIR579', 'score': 10.65}, {'connected_gene': 'ZFR', 'score': 10.6}, {'connected_gene': 'GC05P032310', 'score': 0.77}, {'connected_gene': 'MTMR12', 'score': 0.44}, {'connected_gene': 'GC05M032181', 'score': 0.29}]
chr5	GH05I032249	32249176	32250702	0.89	[{'connected_gene': 'GOLPH3', 'score': 10.95}, {'connected_gene': 'MIR579', 'score': 10.84}, {'connected_gene': 'ZFR', 'score': 10.82}, {'connected_gene': 'GC05P032258', 'score': 0.44}, {'connected_gene': 'PIR44669', 'score': 0.39}, {'connected_gene': 'GC05M032181', 'score': 0.34}, {'connected_gene': 'MTMR12', 'score': 0.21}]
chr5	GH05I032302	32302432	32303802	0.83	[{'connected_gene': 'GOLPH3', 'score': 10.94}, {'connected_gene': 'MIR579', 'score': 10.65}, {'connected_gene': 'ZFR', 'score': 10.6}, {'connected_gene': 'DROSHA', 'score': 9.77}, {'connected_gene': 'MTMR12', 'score': 6.07}, {'connected_gene': 'GC05P032310', 'score': 0.44}, {'connected_gene': 'GC05M032181', 'score': 0.29}]
chr5	GH05I032223	32223344	32226204	0.99	[{'connected_gene': 'GOLPH3', 'score': 12.61}, {'connected_gene': 'MTMR12', 'score': 9.7}, {'connected_gene': 'GC05P032221', 'score': 0.77}, {'connected_gene': 'RNU6-1079P', 'score': 0.39}, {'connected_gene': 'GC05M032236', 'score': 0.39}, {'connected_gene': 'GC05M032181', 'score': 0.25}]
chr5	GH05I032299	32299355	32299504	0.83	[{'connected_gene': 'GOLPH3', 'score': 10.94}, {'connected_gene': 'MTMR12', 'score': 0.39}, {'connected_gene': 'GC05P032310', 'score': 0.39}, {'connected_gene': 'GC05M032181', 'score': 0.31}]
chr5	GH05I032319	32319034	32319812	0.49	[{'connected_gene': 'GOLPH3', 'score': 11.17}, {'connected_gene': 'MTMR12', 'score': 5.0}, {'connected_gene': 'GC05P032360', 'score': 0.26}]
chr5	GH05I032128	32128691	32131470	0.43	[{'connected_gene': 'GOLPH3', 'score': 10.63}, {'connected_gene': 'GC05P032135', 'score': 0.77}, {'connected_gene': 'ENSG00000250764', 'score': 0.44}]
chr5	GH05I032146	32146001	32146200	0.4	[{'connected_gene': 'GOLPH3', 'score': 11.29}, {'connected_gene': 'GC05P032142', 'score': 0.77}, {'connected_gene': 'GC05P032175', 'score': 0.31}]
chr5	GH05I032324	32324640	32325600	0.46	[{'connected_gene': 'MTMR12', 'score': 22.35}, {'connected_gene': 'MIR579', 'score': 10.93}, {'connected_gene': 'GOLPH3', 'score': 10.91}, {'connected_gene': 'ZFR', 'score': 10.85}, {'connected_gene': 'LOC646616', 'score': 10.0}, {'connected_gene': 'SUB1', 'score': 10.0}, {'connected_gene': 'GC05P032360', 'score': 0.28}]
chr5	GH05I032329	32329311	32332495	1.32	[{'connected_gene': 'MTMR12', 'score': 26.7}, {'connected_gene': 'MIR579', 'score': 11.21}, {'connected_gene': 'ZFR', 'score': 11.14}, {'connected_gene': 'GOLPH3', 'score': 10.91}, {'connected_gene': 'LOC646616', 'score': 10.0}, {'connected_gene': 'SUB1', 'score': 10.0}, {'connected_gene': 'GC05P032360', 'score': 0.31}]
chr5	GH05I032279	32279928	32281638	0.96	[{'connected_gene': 'MTMR12', 'score': 12.5}, {'connected_gene': 'GOLPH3', 'score': 10.6}, {'connected_gene': 'GC05M032181', 'score': 0.44}, {'connected_gene': 'GC05P032310', 'score': 0.31}]
chr5	GH05I032153	32153169	32155050	0.67	[{'connected_gene': 'MTMR12', 'score': 5.8}, {'connected_gene': 'RPL27P10', 'score': 5.61}, {'connected_gene': 'GC05P032142', 'score': 0.39}, {'connected_gene': 'GC05P032175', 'score': 0.37}, {'connected_gene': 'GOLPH3', 'score': 0.34}]
chr5	GH05I032164	32164036	32164242	0.6	[{'connected_gene': 'ZFR', 'score': 1.21}, {'connected_gene': 'GC05P032175', 'score': 0.44}, {'connected_gene': 'GOLPH3', 'score': 0.39}, {'connected_gene': 'GC05P032142', 'score': 0.34}]
chr5	GH05I032272	32272852	32279200	1.5	[{'connected_gene': 'DROSHA', 'score': 13.42}, {'connected_gene': 'GOLPH3', 'score': 10.6}, {'connected_gene': 'MTMR12', 'score': 9.16}, {'connected_gene': 'RPL27P10', 'score': 6.01}, {'connected_gene': 'GC05M032181', 'score': 0.77}, {'connected_gene': 'GC05P032310', 'score': 0.29}]
chr5	GH05I031361	31361056	31367567	0.99	[{'connected_gene': 'DROSHA', 'score': 60.27}, {'connected_gene': 'MTMR12', 'score': 51.25}, {'connected_gene': 'GOLPH3', 'score': 18.12}, {'connected_gene': 'ENSG00000254138', 'score': 0.15}, {'connected_gene': 'GC05P031506', 'score': 0.11}]
chr5	GH05I032168	32168902	32169865	0.38	[{'connected_gene': 'RPL27P10', 'score': 11.69}, {'connected_gene': 'GOLPH3', 'score': 0.77}, {'connected_gene': 'GC05P032175', 'score': 0.77}, {'connected_gene': 'GC05P032142', 'score': 0.31}]
chr5	GH05I032165	32165233	32166616	0.57	[{'connected_gene': 'RPL27P10', 'score': 8.08}, {'connected_gene': 'MTMR12', 'score': 5.55}, {'connected_gene': 'GOLPH3', 'score': 0.44}, {'connected_gene': 'GC05P032175', 'score': 0.44}, {'connected_gene': 'GC05P032142', 'score': 0.34}]
chr5	GH05I032230	32230246	32235581	1.37	[{'connected_gene': 'RNU6-1079P', 'score': 550.77}, {'connected_gene': 'GC05M032236', 'score': 550.77}, {'connected_gene': 'GOLPH3', 'score': 12.46}, {'connected_gene': 'MIR579', 'score': 11.2}, {'connected_gene': 'ZFR', 'score': 11.18}, {'connected_gene': 'MTMR12', 'score': 9.71}, {'connected_gene': 'PIR37174', 'score': 0.77}, {'connected_gene': 'GC05P032221', 'score': 0.39}, {'connected_gene': 'GC05M032181', 'score': 0.28}]
chr5	GH05I032207	32207001	32207601	0.46	[{'connected_gene': 'GC05P032208', 'score': 550.77}, {'connected_gene': 'GC05P032207', 'score': 550.77}, {'connected_gene': 'GOLPH3', 'score': 13.34}, {'connected_gene': 'MIR579', 'score': 11.0}, {'connected_gene': 'ZFR', 'score': 10.98}, {'connected_gene': 'MTMR12', 'score': 6.75}, {'connected_gene': 'ENSG00000272086', 'score': 0.29}, {'connected_gene': 'GC05M032181', 'score': 0.21}]
chr5	GH05I032170	32170415	32175599	2.3	[{'connected_gene': 'ENSG00000272086', 'score': 550.77}, {'connected_gene': 'GOLPH3', 'score': 550.77}, {'connected_gene': 'GC05P032175', 'score': 550.77}, {'connected_gene': 'MTMR12', 'score': 24.16}, {'connected_gene': 'DROSHA', 'score': 11.4}, {'connected_gene': 'RPS8P8', 'score': 9.88}, {'connected_gene': 'RPL27P10', 'score': 8.13}, {'connected_gene': 'GC05P032142', 'score': 0.29}]
chr5	GH05I032131	32131797	32134095	0.46	[{'connected_gene': 'GC05P032135', 'score': 550.77}, {'connected_gene': 'ENSG00000200065', 'score': 550.77}, {'connected_gene': 'GOLPH3', 'score': 11.15}, {'connected_gene': 'MTMR12', 'score': 5.54}, {'connected_gene': 'ENSG00000250764', 'score': 0.39}]
chr5	GH05I032125	32125326	32127094	0.2	[{'connected_gene': 'ENSG00000250764', 'score': 0.77}, {'connected_gene': 'GC05P032135', 'score': 0.44}, {'connected_gene': 'GOLPH3', 'score': 0.25}]
chr5	GH05I032158	32158401	32158600	0.43	[{'connected_gene': 'GC05P032175', 'score': 0.39}, {'connected_gene': 'GC05P032142', 'score': 0.37}, {'connected_gene': 'GOLPH3', 'score': 0.37}]
chr5	GH05I032149	32149801	32150000	0.31	[{'connected_gene': 'GC05P032142', 'score': 0.44}, {'connected_gene': 'GOLPH3', 'score': 0.34}, {'connected_gene': 'GC05P032175', 'score': 0.34}]
chr5	GH05I032217	32217801	32218400	0.93	[{'connected_gene': 'PIR52245', 'score': 550.77}, {'connected_gene': 'DROSHA', 'score': 80.37}, {'connected_gene': 'GOLPH3', 'score': 12.51}, {'connected_gene': 'ZFR', 'score': 10.94}, {'connected_gene': 'MTMR12', 'score': 10.21}, {'connected_gene': 'RPL27P10', 'score': 0.77}, {'connected_gene': 'GC05M032181', 'score': 0.23}]
chr5	GH05I032307	32307160	32310600	1.14	[{'connected_gene': 'GC05P032310', 'score': 550.77}, {'connected_gene': 'RNU6-378P', 'score': 550.77}, {'connected_gene': 'GOLPH3', 'score': 11.01}, {'connected_gene': 'MIR579', 'score': 10.25}, {'connected_gene': 'ZFR', 'score': 10.2}, {'connected_gene': 'MTMR12', 'score': 8.19}, {'connected_gene': 'GC05M032181', 'score': 0.28}]