PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000219235	[[57392683, 57392801], [57394348, 57394472], [57397415, 57400102]]	[[57392728, 57392801], [57394348, 57394472], [57397415, 57397500]]
NM_002990	[[57392694, 57392801], [57394348, 57394472], [57397415, 57400102]]	[[57392728, 57392801], [57394348, 57394472], [57397415, 57397500]]

Promoter

Chrom	Start	End	Description
chr16	57392687	57392702	CAGE_peak_1_at_CCL22_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I057078	57078742	57080342	0.2	[{'connected_gene': 'FAM192A', 'score': 10.92}, {'connected_gene': 'RSPRY1', 'score': 10.92}, {'connected_gene': 'CCL22', 'score': 5.14}, {'connected_gene': 'ENSG00000260148', 'score': 0.39}, {'connected_gene': 'ENSG00000260145', 'score': 0.34}, {'connected_gene': 'NLRC5', 'score': 0.16}]
chr16	GH16I057392	57392355	57393447	0.31	[{'connected_gene': 'CX3CL1', 'score': 12.76}, {'connected_gene': 'CCL22', 'score': 12.71}, {'connected_gene': 'PLLP', 'score': 10.64}, {'connected_gene': 'DOK4', 'score': 6.33}, {'connected_gene': 'CIAPIN1', 'score': 5.58}, {'connected_gene': 'COQ9', 'score': 4.93}, {'connected_gene': 'GC16M057389', 'score': 0.77}, {'connected_gene': 'CCL17', 'score': 0.77}]
chr16	GH16I057342	57340189	57340253	0.49	[{'connected_gene': 'CX3CL1', 'score': 12.15}, {'connected_gene': 'ENSG00000271456', 'score': 0.44}, {'connected_gene': 'CCL22', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057339	57339485	57340149	0.98	[{'connected_gene': 'CX3CL1', 'score': 12.15}, {'connected_gene': 'ENSG00000271456', 'score': 0.44}, {'connected_gene': 'CCL22', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057340	57339201	57339400	0.38	[{'connected_gene': 'CX3CL1', 'score': 12.15}, {'connected_gene': 'ENSG00000271456', 'score': 0.44}, {'connected_gene': 'CCL22', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057341	57340777	57342378	1	[{'connected_gene': 'CX3CL1', 'score': 17.03}, {'connected_gene': 'CIAPIN1', 'score': 11.3}, {'connected_gene': 'RSPRY1', 'score': 10.66}, {'connected_gene': 'CNGB1', 'score': 8.82}, {'connected_gene': 'ENSG00000271456', 'score': 0.44}, {'connected_gene': 'CCL22', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057306	57306505	57308408	0.46	[{'connected_gene': 'CCL22', 'score': 12.04}, {'connected_gene': 'CX3CL1', 'score': 12.01}, {'connected_gene': 'PLLP', 'score': 11.72}, {'connected_gene': 'ARL2BP', 'score': 10.39}, {'connected_gene': 'ENSG00000261114', 'score': 5.94}, {'connected_gene': 'TRL-CAG2-2', 'score': 0.44}, {'connected_gene': 'RPL23AP91', 'score': 0.39}, {'connected_gene': 'GC16M057308', 'score': 0.18}]
chr16	GH16I057303	57303574	57305811	1.35	[{'connected_gene': 'CCL22', 'score': 12.04}, {'connected_gene': 'CX3CL1', 'score': 12.01}, {'connected_gene': 'PLLP', 'score': 11.72}, {'connected_gene': 'ARL2BP', 'score': 10.68}, {'connected_gene': 'TRL-CAG2-2', 'score': 0.77}, {'connected_gene': 'RPL23AP91', 'score': 0.37}]
chr16	GH16I057343	57343301	57344000	0.9	[{'connected_gene': 'CCL22', 'score': 33.76}, {'connected_gene': 'CX3CL1', 'score': 13.03}, {'connected_gene': 'LOC105371286', 'score': 5.8}, {'connected_gene': 'ENSG00000271456', 'score': 0.39}, {'connected_gene': 'GC16M057308', 'score': 0.25}]
chr16	GH16I057357	57357523	57358570	0.74	[{'connected_gene': 'CCL22', 'score': 550.77}, {'connected_gene': 'CIAPIN1', 'score': 7.28}, {'connected_gene': 'POLR2C', 'score': 4.89}, {'connected_gene': 'PLLP', 'score': 4.71}, {'connected_gene': 'ENSG00000271456', 'score': 0.31}, {'connected_gene': 'GC16M057308', 'score': 0.29}]
chr16	GH16I057360	57358801	57359200	0.6	[{'connected_gene': 'CCL22', 'score': 550.77}, {'connected_gene': 'DOK4', 'score': 7.34}, {'connected_gene': 'COQ9', 'score': 4.95}, {'connected_gene': 'GC16P057369', 'score': 0.44}, {'connected_gene': 'GC16M057308', 'score': 0.29}]
chr16	GH16I057358	57358734	57358793	0.89	[{'connected_gene': 'CCL22', 'score': 550.77}, {'connected_gene': 'ENSG00000271456', 'score': 0.31}, {'connected_gene': 'GC16M057308', 'score': 0.29}]
chr16	GH16I057359	57358589	57358668	0.59	[{'connected_gene': 'CCL22', 'score': 550.77}, {'connected_gene': 'ENSG00000271456', 'score': 0.31}, {'connected_gene': 'GC16M057308', 'score': 0.29}]
chr16	GH16I057413	57413079	57414118	1.06	[{'connected_gene': 'CCL17', 'score': 550.37}, {'connected_gene': 'PLLP', 'score': 11.77}, {'connected_gene': 'CX3CL1', 'score': 11.55}, {'connected_gene': 'CCL22', 'score': 11.52}, {'connected_gene': 'COQ9', 'score': 5.0}, {'connected_gene': 'GC16P057430', 'score': 0.37}]
chr16	GH16I057394	57394169	57395019	0.92	[{'connected_gene': 'CCL17', 'score': 555.98}, {'connected_gene': 'NUDT21', 'score': 20.29}, {'connected_gene': 'CX3CL1', 'score': 12.76}, {'connected_gene': 'CCL22', 'score': 12.7}, {'connected_gene': 'PLLP', 'score': 11.12}, {'connected_gene': 'CNGB1', 'score': 9.37}, {'connected_gene': 'ADGRG1', 'score': 1.35}, {'connected_gene': 'GC16M057389', 'score': 0.77}]
chr16	GH16I057386	57386042	57386903	0.43	[{'connected_gene': 'CIAPIN1', 'score': 14.91}, {'connected_gene': 'CCL22', 'score': 13.33}, {'connected_gene': 'PLLP', 'score': 10.76}, {'connected_gene': 'GC16M057308', 'score': 0.77}, {'connected_gene': 'CX3CL1', 'score': 0.39}]
chr16	GH16I057416	57416107	57419785	1.18	[{'connected_gene': 'CIAPIN1', 'score': 15.43}, {'connected_gene': 'NUDT21', 'score': 12.22}, {'connected_gene': 'CX3CL1', 'score': 11.84}, {'connected_gene': 'CCL22', 'score': 11.81}, {'connected_gene': 'PLLP', 'score': 11.76}, {'connected_gene': 'POLR2C', 'score': 11.37}, {'connected_gene': 'ARL2BP', 'score': 10.87}, {'connected_gene': 'GC16P057430', 'score': 0.39}, {'connected_gene': 'CCL17', 'score': 0.34}]
chr16	GH16I057482	57482163	57487479	2.22	[{'connected_gene': 'DOK4', 'score': 563.38}, {'connected_gene': 'CIAPIN1', 'score': 21.15}, {'connected_gene': 'COQ9', 'score': 20.29}, {'connected_gene': 'LOC105371286', 'score': 13.11}, {'connected_gene': 'POLR2C', 'score': 12.07}, {'connected_gene': 'CX3CL1', 'score': 10.1}, {'connected_gene': 'CCL22', 'score': 10.09}, {'connected_gene': 'USB1', 'score': 6.55}, {'connected_gene': 'PIR51542', 'score': 0.37}]
chr16	GH16I057434	57434069	57434218	0.2	[{'connected_gene': 'DOK4', 'score': 11.85}, {'connected_gene': 'POLR2C', 'score': 11.84}, {'connected_gene': 'CX3CL1', 'score': 10.84}, {'connected_gene': 'CCL22', 'score': 10.81}, {'connected_gene': 'ARL2BP', 'score': 10.08}, {'connected_gene': 'GC16P057430', 'score': 0.77}, {'connected_gene': 'GC16P057442', 'score': 0.44}, {'connected_gene': 'CIAPIN1', 'score': 0.39}]
chr16	GH16I057235	57235534	57236340	0.76	[{'connected_gene': 'PLLP', 'score': 27.64}, {'connected_gene': 'FAM192A', 'score': 11.53}, {'connected_gene': 'RSPRY1', 'score': 11.53}, {'connected_gene': 'CCL22', 'score': 10.74}, {'connected_gene': 'CX3CL1', 'score': 10.73}, {'connected_gene': 'ARL2BP', 'score': 0.44}]
chr16	GH16I057234	57234890	57235475	0.38	[{'connected_gene': 'PLLP', 'score': 11.65}, {'connected_gene': 'FAM192A', 'score': 11.53}, {'connected_gene': 'RSPRY1', 'score': 11.53}, {'connected_gene': 'CCL22', 'score': 10.74}, {'connected_gene': 'CX3CL1', 'score': 10.73}, {'connected_gene': 'ARL2BP', 'score': 0.44}]
chr16	GH16I057297	57297051	57297723	0.43	[{'connected_gene': 'ARL2BP', 'score': 11.65}, {'connected_gene': 'CCL22', 'score': 11.35}, {'connected_gene': 'CX3CL1', 'score': 11.32}, {'connected_gene': 'CIAPIN1', 'score': 10.86}, {'connected_gene': 'COQ9', 'score': 10.86}, {'connected_gene': 'POLR2C', 'score': 10.49}, {'connected_gene': 'MT1F', 'score': 5.21}, {'connected_gene': 'TRL-CAG2-1', 'score': 0.77}, {'connected_gene': 'PLLP', 'score': 0.39}]
chr16	GH16I057349	57349001	57349800	0.94	[{'connected_gene': 'NUDT21', 'score': 13.62}, {'connected_gene': 'CX3CL1', 'score': 5.4}, {'connected_gene': 'CCL22', 'score': 0.44}, {'connected_gene': 'ENSG00000271456', 'score': 0.37}, {'connected_gene': 'GC16M057308', 'score': 0.28}]
chr16	GH16I057299	57297929	57298502	1	[{'connected_gene': 'TRL-CAG2-1', 'score': 550.77}, {'connected_gene': 'ARL2BP', 'score': 11.65}, {'connected_gene': 'CCL22', 'score': 11.35}, {'connected_gene': 'CX3CL1', 'score': 11.33}, {'connected_gene': 'CIAPIN1', 'score': 10.87}, {'connected_gene': 'COQ9', 'score': 10.87}, {'connected_gene': 'POLR2C', 'score': 10.49}, {'connected_gene': 'PLLP', 'score': 0.39}]
chr16	GH16I057298	57298675	57301483	1.52	[{'connected_gene': 'TRL-CAG2-2', 'score': 550.77}, {'connected_gene': 'TRL-CAG2-1', 'score': 550.77}, {'connected_gene': 'RSPRY1', 'score': 26.99}, {'connected_gene': 'POLR2C', 'score': 22.24}, {'connected_gene': 'FAM192A', 'score': 14.45}, {'connected_gene': 'CSNK2A2', 'score': 12.03}, {'connected_gene': 'CCL22', 'score': 11.83}, {'connected_gene': 'CX3CL1', 'score': 11.8}, {'connected_gene': 'ARL2BP', 'score': 11.65}, {'connected_gene': 'CIAPIN1', 'score': 10.87}, {'connected_gene': 'COQ9', 'score': 10.87}, {'connected_gene': 'NUDT21', 'score': 10.59}, {'connected_gene': 'LOC101927556', 'score': 9.73}, {'connected_gene': 'PLLP', 'score': 6.74}, {'connected_gene': 'MT1F', 'score': 5.12}, {'connected_gene': 'GINS3', 'score': 4.98}]
chr16	GH16I057390	57390709	57390858	0.31	[{'connected_gene': 'GC16M057308', 'score': 550.77}, {'connected_gene': 'GC16M057389', 'score': 550.77}, {'connected_gene': 'CCL22', 'score': 13.31}, {'connected_gene': 'CCL17', 'score': 0.44}]
chr16	GH16I057387	57387571	57388833	1.08	[{'connected_gene': 'GC16M057308', 'score': 550.77}, {'connected_gene': 'NUDT21', 'score': 24.01}, {'connected_gene': 'RSPRY1', 'score': 23.16}, {'connected_gene': 'LOC105371286', 'score': 22.41}, {'connected_gene': 'CCL22', 'score': 13.33}, {'connected_gene': 'LOC101927556', 'score': 13.2}, {'connected_gene': 'CIAPIN1', 'score': 11.77}, {'connected_gene': 'POLR2C', 'score': 10.01}, {'connected_gene': 'CFAP20', 'score': 9.93}, {'connected_gene': 'CCL17', 'score': 3.5}, {'connected_gene': 'CX3CL1', 'score': 0.37}]